Rh3CG064600

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0019914
Physical Location & Seq
Forward (+)
4461735 .. 4462513
779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG064600.1

Sequence Viewer

Length: 321 bp
ATGATCGAGCTAGCTTGTGTTAATTTTGTAGCAAACGGGTTGCAAGGGAAAGTTGGAAAGGCAGCATACTTAGAAAACTGGTTCACCACAGTCACACCCATAACAGCAGGAGAGTCTGTTTTTAGTGTCACCTTTGACTGGGAAGAGGAAATCGGAGTTCCAGGAGCGTTCTTGATAAGAAACAATCATCACAGTGAGTTTTATCTTAAGACTGTCACACTCGAAGATATTCCGGATGAGGGCAGGATCCACTGTTTGCAACTCTTGGGTGTACCCTGCAGCCAAATACGTATGCACAAAAGATCGCATTTTCTTTGTTAA

Protein Analysis

106

Amino Acids

11.94

Weight (kDa)

5.64

Isoelectric Point (pI)

52.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 11 - 82 3.7e-12 PLAT/LH2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019914)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0455071
rosa_samantha Rh3AG063800 Rh3AG064400 Rh3BG066200 Rh3BG066300 Rh3CG064600 Rh3CG064700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 232
AclWI GGATC 2 cut(s) 241, 254
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 2 cut(s) 138, 239
AflII CTTAAG 1 cut(s) 206
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 2 cut(s) 10, 14
AluI AGCT 2 cut(s) 10, 14
AlwI GGATC 2 cut(s) 241, 254
Aor13HI TCCGGA 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 62, 279
Asp700I GAANNNNTTC 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 76, 121
AsuNHI GCTAGC 1 cut(s) 10
BamHI GGATCC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 74, 291
BciT130I CCWGG 1 cut(s) 162
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 277
BfrI CTTAAG 1 cut(s) 206
BisI GCNGC 2 cut(s) 63, 280
BlsI GCNGC 2 cut(s) 64, 281
Bme1390I CCNGG 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 162
BmrI ACTGGG 1 cut(s) 148
BmtI GCTAGC 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 148
BsaAI YACGTR 1 cut(s) 290
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 239
Bse1I ACTGG 2 cut(s) 83, 143
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 138, 239
BseNI ACTGG 2 cut(s) 83, 143
BseXI GCAGC 2 cut(s) 74, 291
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 2 cut(s) 138, 239
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 3 cut(s) 3, 246, 302
BspEI TCCGGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 248
BspMAI CTGCAG 1 cut(s) 281
BspOI GCTAGC 1 cut(s) 14
BspPI GGATC 2 cut(s) 241, 254
BspTI CTTAAG 1 cut(s) 206
BsrI ACTGG 2 cut(s) 83, 143
BssMI GATC 3 cut(s) 3, 246, 302
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 4 cut(s) 91, 194, 214, 254
Bst6I CTCTTC 1 cut(s) 138
BstAFI CTTAAG 1 cut(s) 206
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 3 cut(s) 6, 249, 305
BstMBI GATC 3 cut(s) 3, 246, 302
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 277
BstSNI TACGTA 1 cut(s) 290
BstV1I GCAGC 2 cut(s) 74, 291
BstX2I RGATCY 1 cut(s) 246
BstYI RGATCY 1 cut(s) 246
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 2 cut(s) 199, 250
Cac8I GCNNGC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 272
CviJI RGCY 3 cut(s) 10, 14, 282
CviKI_1 RGCY 3 cut(s) 10, 14, 282
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 1 cut(s) 70
DpnI GATC 3 cut(s) 5, 248, 304
DpnII GATC 3 cut(s) 3, 246, 302
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco105I TACGTA 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 160
FaiI YATR 3 cut(s) 67, 101, 293
Fnu4HI GCNGC 2 cut(s) 63, 280
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 2 cut(s) 63, 280
FspBI CTAG 1 cut(s) 11
GluI GCNGC 2 cut(s) 63, 280
HapII CCGG 1 cut(s) 233
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 233
HphI GGTGA 2 cut(s) 76, 121
Hpy166II GTNNAC 2 cut(s) 84, 272
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 2 cut(s) 172, 233
Hpy8I GTNNAC 2 cut(s) 84, 272
HpyCH4III ACNGT 4 cut(s) 91, 194, 214, 254
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 4 cut(s) 43, 259, 279, 295
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 289
Kpn2I TCCGGA 1 cut(s) 232
Kzo9I GATC 3 cut(s) 3, 246, 302
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 8 cut(s) 64, 93, 124, 147, 174, 229, 246, 289
Lsp1109I GCAGC 2 cut(s) 74, 291
MaeI CTAG 1 cut(s) 11
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 3 cut(s) 91, 127, 214
MalI GATC 3 cut(s) 5, 248, 304
MboI GATC 3 cut(s) 3, 246, 302
MboII GAAGA 2 cut(s) 155, 236
MflI RGATCY 1 cut(s) 246
MluCI AATT 1 cut(s) 22
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 2 cut(s) 139, 232
MroI TCCGGA 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 3 cut(s) 21, 207, 319
MslI CAYNNNNRTG 1 cut(s) 192
MspCI CTTAAG 1 cut(s) 206
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
NdeII GATC 3 cut(s) 3, 246, 302
NheI GCTAGC 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 248
NmuCI GTSAC 3 cut(s) 91, 127, 214
PdmI GAANNNNTTC 1 cut(s) 228
PfoI TCCNGGA 1 cut(s) 160
PkrI GCNGC 2 cut(s) 64, 281
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 248
PstI CTGCAG 1 cut(s) 281
PsuI RGATCY 1 cut(s) 246
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 3 cut(s) 21, 207, 319
SatI GCNGC 2 cut(s) 63, 280
Sau3AI GATC 3 cut(s) 3, 246, 302
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 162
SetI ASST 4 cut(s) 12, 16, 134, 292
SfcI CTRYAG 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SnaBI TACGTA 1 cut(s) 290
Sse9I AATT 1 cut(s) 22
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 4 cut(s) 91, 194, 214, 254
TaiI ACGT 1 cut(s) 292
TaqI TCGA 2 cut(s) 6, 222
TasI AATT 1 cut(s) 22
Tru1I TTAA 3 cut(s) 21, 207, 319
Tru9I TTAA 3 cut(s) 21, 207, 319
TscAI CASTG 2 cut(s) 199, 257
TseFI GTSAC 3 cut(s) 91, 127, 214
TseI GCWGC 2 cut(s) 62, 279
Tsp45I GTSAC 3 cut(s) 91, 127, 214
TspRI CASTG 2 cut(s) 199, 257
Vha464I CTTAAG 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.