Rh3CG064700

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0019914
Physical Location & Seq
Forward (+)
4462747 .. 4463962
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG064700.1

Sequence Viewer

Length: 765 bp
ATGAGGGGGAAGAATATGTCCGTCCTATTCTTGGAGGATCTAGAGAGTACATACCCTTACCCTCGAAGAGGAAGAACTGGACGAGCACCGACAAAGACAGATTCAAACAGAGACAGTAGGTTGAACCTTCTTCTGAGCCTAAACATTTATGTTCCGAGAGATGAACGATTTGGCCACTTGAAGTTGGCAGACTTTCTTACTTACGGTTTAAAATCCATAGCTCAGTTCTTTAGAACGGAGCTTGAGGCTTTCTTTGATGACACTCCCAACGAGTTTGACAGCTTCGAAGATGTGCTTAAACTTTATGAAGGAGGGATTCCTTTGCCTCAAAGTTTATTAAAGGATATTGGGGACAACATCCCAGTGGAGATGCTCAAGGAAATTCTACGAACCGATGGTGAAAATTTCCTCAGGTTCCCAGTGCCTCAAGTGATCAAAGAGGATAAGACTGCTTGGAGGACTAATGAAGAATTTGCCAGAGTAATGTTGGCTGGAGTTGACCCTGTCACCATTCAGCGTCTCCAAAAATTTCCACCAGCAAGCCAGCCGGATCCAACAGTTTACGGTGATCAAACCAGTACAATAACAGAACAGCACATAAAGGATAACTTGGAAGGGCTTTCAATAGATGAGGCAATCGAGAACAAGAAGCTATTCATATTAGATCATCATGATGCCTTTATGCCGTACCTGAGGCGTTATTTAGGACAGGAAGAGCAGAAGAGGGAAGGAAGAGAGCATTATGAATTGCCCTATTTGATCTAG

Protein Analysis

254

Amino Acids

29.56

Weight (kDa)

5.12

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipoxygenase PF00305 16 - 239 1.9e-75 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019914)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0455071
rosa_samantha Rh3AG063800 Rh3AG064400 Rh3BG066200 Rh3BG066300 Rh3CG064600 Rh3CG064700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 45, 545, 558
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 4 cut(s) 381, 403, 470, 527
AfaI GTAC 3 cut(s) 49, 580, 689
AfiI CCNNNNNNNGG 2 cut(s) 31, 68
AgsI TTSAA 4 cut(s) 105, 124, 181, 624
AluBI AGCT 4 cut(s) 221, 241, 282, 652
AluI AGCT 4 cut(s) 221, 241, 282, 652
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 105, 524
AlwI GGATC 3 cut(s) 45, 545, 558
AoxI GGCC 1 cut(s) 172
ApoI RAATTY 4 cut(s) 381, 403, 470, 527
Asp700I GAANNNNTTC 1 cut(s) 653
AsuHPI GGTGA 3 cut(s) 410, 499, 578
AsuII TTCGAA 1 cut(s) 285
AxyI CCTNAGG 2 cut(s) 410, 692
BalI TGGCCA 1 cut(s) 174
BamHI GGATCC 1 cut(s) 550
Bbv12I GWGCWC 1 cut(s) 88
BccI CCATC 1 cut(s) 389
BceAI ACGGC 1 cut(s) 670
BclI TGATCA 2 cut(s) 432, 568
BcoDI GTCTC 2 cut(s) 105, 524
BfaI CTAG 2 cut(s) 41, 763
BmiI GGNNCC 2 cut(s) 416, 552
BmrI ACTGGG 2 cut(s) 356, 413
BmsI GCATC 2 cut(s) 360, 664
BmuI ACTGGG 2 cut(s) 356, 413
BpmI CTGGAG 1 cut(s) 513
Bpu14I TTCGAA 1 cut(s) 285
BpuEI CTTGAG 3 cut(s) 263, 359, 411
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 68
Bse1I ACTGG 4 cut(s) 82, 362, 419, 576
Bse21I CCTNAGG 2 cut(s) 410, 692
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 31, 68
BseMII CTCAG 4 cut(s) 125, 236, 424, 683
BseNI ACTGG 4 cut(s) 82, 362, 419, 576
BshFI GGCC 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 548
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 2 cut(s) 31, 68
BsmAI GTCTC 2 cut(s) 105, 524
BsmBI CGTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 1 cut(s) 174
Bsp119I TTCGAA 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 6 cut(s) 37, 432, 550, 568, 664, 759
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 4 cut(s) 126, 235, 423, 684
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 2 cut(s) 416, 552
BspPI GGATC 3 cut(s) 45, 545, 558
BspQI GCTCTTC 1 cut(s) 708
BspT104I TTCGAA 1 cut(s) 285
BsrI ACTGG 4 cut(s) 82, 362, 419, 576
BssMI GATC 6 cut(s) 37, 432, 550, 568, 664, 759
Bst4CI ACNGT 4 cut(s) 116, 206, 559, 566
Bst6I CTCTTC 4 cut(s) 61, 708, 716, 727
BstBI TTCGAA 1 cut(s) 285
BstC8I GCNNGC 2 cut(s) 541, 545
BstDEI CTNAG 4 cut(s) 134, 222, 410, 692
BstENI CCTNNNNNAGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 6 cut(s) 40, 435, 553, 571, 667, 762
BstMAI GTCTC 2 cut(s) 105, 524
BstMBI GATC 6 cut(s) 37, 432, 550, 568, 664, 759
BstX2I RGATCY 2 cut(s) 37, 550
BstYI RGATCY 2 cut(s) 37, 550
Bsu36I CCTNAGG 2 cut(s) 410, 692
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 2 cut(s) 369, 426
Cac8I GCNNGC 2 cut(s) 541, 545
CciI TCATGA 1 cut(s) 670
CseI GACGC 1 cut(s) 506
Csp6I GTAC 3 cut(s) 48, 579, 688
CviAII CATG 1 cut(s) 671
CviQI GTAC 3 cut(s) 48, 579, 688
DdeI CTNAG 4 cut(s) 134, 222, 410, 692
DpnI GATC 6 cut(s) 39, 434, 552, 570, 666, 761
DpnII GATC 6 cut(s) 37, 432, 550, 568, 664, 759
DraI TTTAAA 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 4 cut(s) 61, 708, 716, 727
EarI CTCTTC 4 cut(s) 61, 708, 716, 727
Eco81I CCTNAGG 2 cut(s) 410, 692
EcoNI CCTNNNNNAGG 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 524
FaeI CATG 1 cut(s) 674
FalI AAGNNNNNCTT 4 cut(s) 279, 311, 593, 625
FaqI GGGAC 1 cut(s) 365
FatI CATG 1 cut(s) 670
FbaI TGATCA 2 cut(s) 432, 568
FokI GGATG 1 cut(s) 344
FspBI CTAG 2 cut(s) 41, 763
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 1 cut(s) 174
HapII CCGG 1 cut(s) 548
HgaI GACGC 1 cut(s) 506
Hin1II CATG 1 cut(s) 674
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HinfI GANTC 2 cut(s) 101, 316
HpaII CCGG 1 cut(s) 548
HphI GGTGA 3 cut(s) 410, 499, 578
Hpy166II GTNNAC 2 cut(s) 499, 562
Hpy188I TCNGA 2 cut(s) 135, 156
Hpy188III TCNNGA 3 cut(s) 41, 640, 671
Hpy8I GTNNAC 2 cut(s) 499, 562
HpyAV CCTTC 4 cut(s) 137, 302, 608, 722
HpyCH4III ACNGT 4 cut(s) 116, 206, 559, 566
HpyF3I CTNAG 4 cut(s) 134, 222, 410, 692
Hsp92II CATG 1 cut(s) 674
Ksp22I TGATCA 2 cut(s) 432, 568
Kzo9I GATC 6 cut(s) 37, 432, 550, 568, 664, 759
LguI GCTCTTC 1 cut(s) 708
LmnI GCTCC 1 cut(s) 238
LweI GCATC 2 cut(s) 360, 664
MaeI CTAG 2 cut(s) 41, 763
MaeIII GTNAC 1 cut(s) 505
MalI GATC 6 cut(s) 39, 434, 552, 570, 666, 761
MboI GATC 6 cut(s) 37, 432, 550, 568, 664, 759
MboII GAAGA 9 cut(s) 22, 78, 84, 122, 299, 479, 725, 733, 744
MflI RGATCY 2 cut(s) 37, 550
MhlI GDGCHC 1 cut(s) 88
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 5 cut(s) 381, 403, 470, 527, 746
MluNI TGGCCA 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 578
Mox20I TGGCCA 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 653
MscI TGGCCA 1 cut(s) 174
MseI TTAA 3 cut(s) 209, 297, 338
MslI CAYNNNNRTG 2 cut(s) 362, 672
Msp20I TGGCCA 1 cut(s) 174
MspI CCGG 1 cut(s) 548
NdeII GATC 6 cut(s) 37, 432, 550, 568, 664, 759
NlaIII CATG 1 cut(s) 674
NlaIV GGNNCC 2 cut(s) 416, 552
NmuCI GTSAC 1 cut(s) 505
NspV TTCGAA 1 cut(s) 285
PagI TCATGA 1 cut(s) 670
PciSI GCTCTTC 1 cut(s) 708
PdmI GAANNNNTTC 1 cut(s) 653
PfeI GAWTC 2 cut(s) 101, 316
PflFI GACNNNGTC 1 cut(s) 503
PspN4I GGNNCC 2 cut(s) 416, 552
PsuI RGATCY 2 cut(s) 37, 550
PsyI GACNNNGTC 1 cut(s) 503
RsaI GTAC 3 cut(s) 49, 580, 689
RsaNI GTAC 3 cut(s) 48, 579, 688
RseI CAYNNNNRTG 2 cut(s) 362, 672
SapI GCTCTTC 1 cut(s) 708
SaqAI TTAA 3 cut(s) 209, 297, 338
Sau3AI GATC 6 cut(s) 37, 432, 550, 568, 664, 759
SduI GDGCHC 1 cut(s) 88
SetI ASST 8 cut(s) 122, 129, 223, 243, 284, 416, 654, 693
SfaNI GCATC 2 cut(s) 360, 664
SfuI TTCGAA 1 cut(s) 285
SmiMI CAYNNNNRTG 2 cut(s) 362, 672
SmlI CTYRAG 3 cut(s) 242, 374, 426
SmoI CTYRAG 3 cut(s) 242, 374, 426
Sse9I AATT 5 cut(s) 381, 403, 470, 527, 746
SspMI CTAG 2 cut(s) 41, 763
TaaI ACNGT 4 cut(s) 116, 206, 559, 566
TaqI TCGA 3 cut(s) 64, 285, 639
TasI AATT 5 cut(s) 381, 403, 470, 527, 746
TatI WGTACW 2 cut(s) 47, 578
TfiI GAWTC 2 cut(s) 101, 316
Tru1I TTAA 3 cut(s) 209, 297, 338
Tru9I TTAA 3 cut(s) 209, 297, 338
TscAI CASTG 2 cut(s) 369, 426
TseFI GTSAC 1 cut(s) 505
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 5 cut(s) 177, 321, 480, 646, 759
TspGWI ACGGA 2 cut(s) 10, 251
TspRI CASTG 2 cut(s) 369, 426
Tth111I GACNNNGTC 1 cut(s) 503
XagI CCTNNNNNAGG 1 cut(s) 66
XapI RAATTY 4 cut(s) 381, 403, 470, 527
XbaI TCTAGA 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XmnI GAANNNNTTC 1 cut(s) 653
XspI CTAG 2 cut(s) 41, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.