Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011670

Physical Location & Seq

Genomic Coordinates Forward (+)

56341545 .. 56346232

Gene Structure 4688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG303200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2811 bp

ATGGGAAGCCGTCACGAGGATGGAGCTTCCGCGGAGAACAACTCCGACTCCGAGGTCATGGCGAGAGTGGAGAGGAAGGCTTTCAGCGGTCCTCTAGGCTCGAGCTCCTCCTCCAGGGCTTGGAGGAGGATCAAGAGCTTGGATAGGAAGAGGACTAGTAGTACTAGCACCGAAAACGATGACGACGAGGCCTACGTGGAGATAACTCTCGACATCCTCGACGACTCAGTGGCCGTGCACAGTGTTCAGGCAGCCGGAGGCGGTGGCCACGAGGATCCGGAGCTTGCCTTGCTGGCCAAGAAGACTCTGGAAGGCAAGAAGTCGGCTTCGTTCCGGTCGTCTCTCCTCCGCAACACTTCGACGCACATACGGCAGGTCTCGCAAGAGCTGAAGCGTCTGGCTTCGTTCTCGAAGCGAAACTCCGGCGCCGGCCGACGTTTCGATCGGACCAGGTCTGCCACTGCACAAGCCTTGAAGAGCCTCAAGTTCATCACCGCCAAGGCCTCCGCCACCAACGGCTGGGCCACCGTCGAGAAACGTTTCGACGACCTTACCGCCACCTCCAATGGCCTCCTCAACTCTTCTCTCTTCGGTGAATGCATAGGAATGAACAAGGAGTCTAAGGAGTTCGCCGGCGAGCTTTTCCGGGCACTTGCTCGGAGACGCAACATTAGTGGTGATTGCATCAACAAGGCACAGCTTAGAGAATTCTGGGAGCAGATTTCTGACGAGAGCTTCGACTCTAGGCTCCAGACTTTCTTTGACATGGTGGATAAAGACGCCGATGGAAGAATCACAGAAGAAGAAGTCAGAGAGATTATTAGTCTCAGTGCTTCTGCGAACAAACTCTCCAACATTCAGAAACAAGCTCAGGAATATGCAGCGCTCATTATGGAAGAGCTTGACCCAGACAATGTTGGCTACATTATGGTTGAAAACTTGGAAACTTTGTTGCTGCAAGCTCCGGTGCACAAATCGGTCACGGTAGGCGACAGCCGAGTTCTGAGTCAGCTACTGAGTCAGAAGCTGAAGCCAACACAAGAAAACAACCCAATTACAAGATGGTACCAGAAGACCAAGTACTTCTTGTTAGATAATTGGCAAAGAGTTTGGGTTATGATGCTATGGATTGGGATAGTCTCAGCTTTGTTTGTGTACAAATTTATTCAGTACAAGAATAAGGAAGCATTTGAAGTGATGGGCTATTGTGTTTGCATAGCCAAAGGAGGAGCAGAGACTTTGAAATTCAACATGGCACTGATTTTGTTACCAGTTTGTCGAAACACAATTACCTGGCTCAGAAACAAGACCAAATTGGGGGTGGTAGTCCCGTTCGATGATAATCTGAACTTTCATAAGGTCATTGCAGTTGGAATAGTCATCGGGGTTGGATTACACGCCGGAGCACATTTGACGTGTGATTTTCCGAGGCTGATTCACGCAACGGAAGAACAGTATGAGCCGATGATACCCTACTTTGGTAAAGACCAGCCTGAGAATTACTGGTGGTTTTTGGAGGGAGTGGAAGGGTTGACTGGGATTGGGATTGTGGTGTTGATGACTATAGCATTCACTTTGGCCACTCCTTGGTTTAGAAGAAACAAGTTGAACTTGCCAAAGCCGCTGAAGAAACTCACAGGTTTCAACGCCTTTTGGTATTCACACCATCTATTTGTGATTGTCTACGCTCTCCTCATAATCCATAGCATTAAACTCTACCTCACTAAGAAATGGTACTACAAAACGACATGGATGTATTTGGCAGTGCCGGTTTTCCTCTACGCTTGTGAAAGGCTGATCAGATTTTTTAGATCAAGCATCAAGCCAGTGAAGATTCTCAAGGTTGCTGTTTATCCGGGAAATGTGCTTGCACTGCACATGTCTAAGCCGCAAGGCTTCAAATACAAGAGCGGGCAGTACATGTTCGTCAACTGCGCCGCAGTTTCTCCATTCGAATGGCATCCATTTTCAATTACCTCTTCACCGGGAGATGACTACCTGAGCGTCCACATTAGAACACTCGGGGATTGGACTCGGCAGCTCAAGACCGTTTTCTCATCGGTATGTCAGCCTTCAACTGCTGGTAAAAGTGGGCTACTCAGAGCTGACATGCAAGAAGAAAACAACCCCAGCTTTCCCAAGATACTAATCGACGGTCCATACGGAGCACCAGCACAAGACTACAAGAAATACGACGTCGTGTTGCTGGTCGGCCTCGGAATCGGGGCCACGCCCATGGTCAGCATTGTCAAAGACATCATCAACAACATGAATTTCTTGAAGAACAAGGAGCTAGACGAGTACGCAGTTTTGGACGACGTACTAGAGAGTGGCAAGGCTGTTAATAACAACAACAGCAGTAGTGGCAAGAGCAACAAGAGCAATAAAGGGTTCAGGACCCAGAAAGCTTATTACTATTGGGTCACGAGAGAACAGGGCTCGTTTGAATGGTTCAAAGGGATTCTCAATGAGGTGGCAGAGATGGACGAAAAGGGTGTGATAGAGTTGCACAATTACTGTACCAGTGTGTACGAGGAAGGTGATGCCAGGTCAGCACTGATAGCCATGCTTCAGAATCTCCACCATGCCAAGAATGGCGTAGATGTAGTCTCTGGGACGCGCGTCAAATCCCATTTCGCCAAACCCAATTGGCGCCAAGTCTACAAGAAAATCGCGCTGCATCATCCTGATAGCCGAGTTGGTGTGTTTTACTGTGGGGCACCGGCACTAACAAAGGAGCTGAGGCAATTGGCGCTGGACTTTTCTCACAGGACCTCCACCAAGTTCGAGTTTCATAAAGAGAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009987 GO:0010941 GO:0012505 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0023052 GO:0033500 GO:0033554 GO:0042592 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048878 GO:0050664 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0071214 GO:0071470 GO:0071944 GO:0072593 GO:0098542 GO:0104004

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

936

Amino Acids

105.79

Weight (kDa)

9.08

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NADPH_Ox	PF08414	146 - 248	5.9e-37	Respiratory burst NADPH oxidase
EF-hand_7	PF13499	248 - 314	4.7e-06	EF-hand domain pair
Ferric_reduct	PF01794	418 - 565	7e-12	Ferric reductase like transmembrane component
FAD_binding_8	PF08022	609 - 725	1.2e-37	FAD-binding domain
NAD_binding_6	PF08030	731 - 918	5.8e-49	Ferric reductase NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47910
fragaria_vesca	FvH4_4g22100 FvH4_4g22100
malus_domestica	MD13G1134500.v1.1 MD16G1145100.v1.1
prunus_persica	Prupe.1G211000_v2.0.a1
pyrus_communis	pycom13g11730 pycom16g11470
rosa_chinensis	RchiOBHm_Chr4g0428361
rosa_laevigata	RLG00000007160
rosa_multiflora	Rmu_co8508821.1_g000001 Rmu_sc0003384.1_g000003 Rmu_sc0010192.1_g000005
rosa_roxburghii	Rroxscaffold_5G00370020
rosa_rugosa	Rorug04G0225000
rosa_samantha	Rh4AG281800 Rh4CG303200 Rh4DG284600
rosa_wichuraiana	Rw4G024470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
AatII	GACGTC	1 cut(s)	2199
Acc36I	ACCTGC	1 cut(s)	364
Acc65I	GGTACC	1 cut(s)	1065
AccB1I	GGYRCC	4 cut(s)	425, 1065, 2652, 2719
AccB7I	CCANNNNNTGG	3 cut(s)	120, 519, 1587
AccBSI	CCGCTC	1 cut(s)	1911
AccI	GTMKAC	2 cut(s)	1683, 2661
AccII	CGCG	4 cut(s)	32, 2620, 2622, 2675
AccIII	TCCGGA	1 cut(s)	277
AclI	AACGTT	1 cut(s)	538
AclWI	GGATC	3 cut(s)	137, 269, 282
AcoI	YGGCCR	5 cut(s)	231, 265, 294, 430, 1578
AcsI	RAATTY	5 cut(s)	707, 1160, 1244, 2272, 2803
AcuI	CTGAAG	4 cut(s)	410, 1049, 1646, 2555
AcyI	GRCGYC	4 cut(s)	426, 780, 2196, 2653
AfeI	AGCGCT	1 cut(s)	885
AfiI	CCNNNNNNNGG	7 cut(s)	16, 114, 120, 519, 1317, 1478, 1587
AflIII	ACRYGT	3 cut(s)	1415, 1878, 1920
AhlI	ACTAGT	1 cut(s)	155
AjiI	CACGTC	1 cut(s)	1416
AjnI	CCWGG	4 cut(s)	113, 449, 1292, 2546
AloI	GAACNNNNNNTCC	2 cut(s)	833, 865
Alw21I	GWGCWC	5 cut(s)	107, 240, 972, 1408, 2170
Alw26I	GTCTC	7 cut(s)	345, 382, 655, 830, 1144, 1229, 2614
Alw44I	GTGCAC	2 cut(s)	236, 968
AlwI	GGATC	3 cut(s)	137, 269, 282
AlwNI	CAGNNNCTG	2 cut(s)	1015, 1027
Ama87I	CYCGRG	2 cut(s)	100, 2021
Aor13HI	TCCGGA	1 cut(s)	277
Aor51HI	AGCGCT	1 cut(s)	885
ApaLI	GTGCAC	2 cut(s)	236, 968
ApeKI	GCWGC	5 cut(s)	251, 881, 955, 2038, 2677
ApoI	RAATTY	5 cut(s)	707, 1160, 1244, 2272, 2803
ArsI	GACNNNNNNTTYG	2 cut(s)	719, 751
Asp700I	GAANNNNTTC	2 cut(s)	80, 539
Asp718I	GGTACC	1 cut(s)	1065
AspLEI	GCGC	7 cut(s)	428, 886, 1937, 2622, 2655, 2677, 2755
AspS9I	GGNCC	7 cut(s)	89, 447, 522, 2156, 2226, 2397, 2772
AsuC2I	CCSGG	3 cut(s)	647, 1857, 1986
AsuHPI	GGTGA	5 cut(s)	484, 605, 689, 1974, 2552
AsuII	TTCGAA	1 cut(s)	1953
AvaI	CYCGRG	2 cut(s)	100, 2021
AvaII	GGWCC	5 cut(s)	89, 447, 2156, 2397, 2772
BaeGI	GKGCMC	4 cut(s)	240, 652, 972, 2722
BalI	TGGCCA	3 cut(s)	267, 296, 1580
BamHI	GGATCC	1 cut(s)	274
BanI	GGYRCC	4 cut(s)	425, 1065, 2652, 2719
BanII	GRGCYC	2 cut(s)	107, 2441
BarI	GAAGNNNNNNTAC	2 cut(s)	1064, 1096
BauI	CACGAG	3 cut(s)	14, 269, 2425
BbsI	GAAGAC	2 cut(s)	308, 1079
Bbv12I	GWGCWC	5 cut(s)	107, 240, 972, 1408, 2170
BbvCI	CCTCAGC	1 cut(s)	2741
BbvI	GCAGC	5 cut(s)	263, 893, 942, 2050, 2664
BccI	CCATC	6 cut(s)	14, 779, 1056, 1192, 1674, 2476
BceAI	ACGGC	3 cut(s)	218, 386, 532
BciT130I	CCWGG	4 cut(s)	115, 451, 1294, 2548
BclI	TGATCA	1 cut(s)	1797
BcnI	CCSGG	3 cut(s)	647, 1857, 1986
BcoDI	GTCTC	7 cut(s)	345, 382, 655, 830, 1144, 1229, 2614
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	7 cut(s)	95, 156, 165, 744, 2294, 2324, 2809
BfmI	CTRYAG	1 cut(s)	1563
BfoI	RGCGCY	4 cut(s)	429, 887, 2656, 2756
BfuAI	ACCTGC	1 cut(s)	364
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	8 cut(s)	252, 882, 956, 1622, 1889, 1938, 2039, 2678
BlsI	GCNGC	8 cut(s)	253, 883, 957, 1623, 1890, 1939, 2040, 2679
BmcAI	AGTACT	2 cut(s)	163, 1082
Bme1390I	CCNGG	7 cut(s)	115, 451, 647, 1294, 1857, 1986, 2548
Bme18I	GGWCC	5 cut(s)	89, 447, 2156, 2397, 2772
BmeT110I	CYCGRG	2 cut(s)	100, 2021
BmgBI	CACGTC	1 cut(s)	1416
BmgT120I	GGNCC	7 cut(s)	89, 447, 522, 2156, 2226, 2397, 2772
BmiI	GGNNCC	8 cut(s)	276, 427, 749, 1067, 2227, 2399, 2654, 2721
BmrFI	CCNGG	7 cut(s)	115, 451, 647, 1294, 1857, 1986, 2548
BmrI	ACTGGG	1 cut(s)	1545
BmsI	GCATC	6 cut(s)	693, 1110, 1827, 1969, 2533, 2689
BmuI	ACTGGG	1 cut(s)	1545
BoxI	GACNNNNGTC	1 cut(s)	2621
BpiI	GAAGAC	2 cut(s)	308, 1079
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpmI	CTGGAG	2 cut(s)	97, 734
Bpu10I	CCTNAGC	3 cut(s)	870, 2000, 2741
Bpu14I	TTCGAA	1 cut(s)	1953
BpuEI	CTTGAG	3 cut(s)	467, 1823, 2027
BpuMI	CCSGG	3 cut(s)	647, 1857, 1986
BsaAI	YACGTR	1 cut(s)	196
BsaBI	GATNNNNATC	2 cut(s)	1341, 2147
BsaHI	GRCGYC	4 cut(s)	426, 780, 2196, 2653
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	8 cut(s)	30, 51, 114, 498, 1427, 1586, 2215, 2235
BsaWI	WCCGGW	3 cut(s)	277, 333, 964
BsaXI	ACNNNNNCTCC	6 cut(s)	32, 62, 833, 863, 2759, 2789
Bsc4I	CCNNNNNNNGG	7 cut(s)	16, 114, 120, 519, 1317, 1478, 1587
Bse118I	RCCGGY	4 cut(s)	428, 632, 1768, 2722
Bse1I	ACTGG	5 cut(s)	1271, 1508, 1540, 1826, 2523
Bse3DI	GCAATG	1 cut(s)	1362
Bse8I	GATNNNNATC	2 cut(s)	1341, 2147
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	4 cut(s)	115, 451, 1294, 2548
BseDI	CCNNGG	8 cut(s)	30, 51, 114, 498, 1427, 1586, 2215, 2235
BseGI	GGATG	5 cut(s)	25, 213, 1758, 1960, 2683
BseJI	GATNNNNATC	2 cut(s)	1341, 2147
BseLI	CCNNNNNNNGG	7 cut(s)	16, 114, 120, 519, 1317, 1478, 1587
BseMI	GCAATG	1 cut(s)	1362
BseNI	ACTGG	5 cut(s)	1271, 1508, 1540, 1826, 2523
BseRI	GAGGAG	7 cut(s)	97, 100, 139, 335, 563, 1242, 1682
BseSI	GKGCMC	4 cut(s)	240, 652, 972, 2722
BseX3I	CGGCCG	1 cut(s)	430
BseXI	GCAGC	5 cut(s)	263, 893, 942, 2050, 2664
BseYI	CCCAGC	2 cut(s)	519, 2129
BsgI	GTGCAG	2 cut(s)	447, 1859
Bsh1236I	CGCG	4 cut(s)	32, 2620, 2622, 2675
Bsh1285I	CGRYCG	3 cut(s)	338, 433, 445
BshNI	GGYRCC	4 cut(s)	425, 1065, 2652, 2719
BsiEI	CGRYCG	3 cut(s)	338, 433, 445
BsiHKAI	GWGCWC	5 cut(s)	107, 240, 972, 1408, 2170
BsiHKCI	CYCGRG	2 cut(s)	100, 2021
BslFI	GGGAC	2 cut(s)	1313, 2629
BslI	CCNNNNNNNGG	7 cut(s)	16, 114, 120, 519, 1317, 1478, 1587
BsmAI	GTCTC	7 cut(s)	345, 382, 655, 830, 1144, 1229, 2614
BsmBI	CGTCTC	2 cut(s)	345, 655
BsmFI	GGGAC	2 cut(s)	1313, 2629
BsmI	GAATGC	2 cut(s)	602, 1568
Bso31I	GGTCTC	1 cut(s)	382
BsoBI	CYCGRG	2 cut(s)	100, 2021
Bsp119I	TTCGAA	1 cut(s)	1953
Bsp1286I	GDGCHC	8 cut(s)	107, 240, 652, 972, 1408, 2170, 2441, 2722
Bsp13I	TCCGGA	1 cut(s)	277
Bsp1407I	TGTACA	1 cut(s)	1155
Bsp143I	GATC	5 cut(s)	129, 274, 442, 1797, 1811
Bsp19I	CCATGG	1 cut(s)	2235
BspEI	TCCGGA	1 cut(s)	277
BspFNI	CGCG	4 cut(s)	32, 2620, 2622, 2675
BspLI	GGNNCC	8 cut(s)	276, 427, 749, 1067, 2227, 2399, 2654, 2721
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	3 cut(s)	137, 269, 282
BspQI	GCTCTTC	2 cut(s)	470, 891
BspT104I	TTCGAA	1 cut(s)	1953
BspT107I	GGYRCC	4 cut(s)	425, 1065, 2652, 2719
BspTNI	GGTCTC	1 cut(s)	382
BsrBI	CCGCTC	1 cut(s)	1911
BsrDI	GCAATG	1 cut(s)	1362
BsrFI	RCCGGY	4 cut(s)	428, 632, 1768, 2722
BsrGI	TGTACA	1 cut(s)	1155
BsrI	ACTGG	5 cut(s)	1271, 1508, 1540, 1826, 2523
BssAI	RCCGGY	4 cut(s)	428, 632, 1768, 2722
BssECI	CCNNGG	8 cut(s)	30, 51, 114, 498, 1427, 1586, 2215, 2235
BssMI	GATC	5 cut(s)	129, 274, 442, 1797, 1811
BssNI	GRCGYC	4 cut(s)	426, 780, 2196, 2653
BssSI	CACGAG	3 cut(s)	14, 269, 2425
BssT1I	CCWWGG	3 cut(s)	498, 1586, 2235
Bst2BI	CACGAG	3 cut(s)	14, 269, 2425
Bst2UI	CCWGG	4 cut(s)	115, 451, 1294, 2548
Bst4CI	ACNGT	8 cut(s)	242, 529, 985, 1455, 2050, 2156, 2519, 2714
Bst6I	CTCTTC	6 cut(s)	143, 470, 586, 593, 891, 1984
BstACI	GRCGYC	4 cut(s)	426, 780, 2196, 2653
BstAUI	TGTACA	1 cut(s)	1155
BstBAI	YACGTR	1 cut(s)	196
BstBI	TTCGAA	1 cut(s)	1953
BstC8I	GCNNGC	8 cut(s)	285, 294, 430, 634, 638, 960, 1869, 1913
BstDSI	CCRYGG	2 cut(s)	30, 2235
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	5 cut(s)	25, 213, 1758, 1960, 2683
BstFNI	CGCG	4 cut(s)	32, 2620, 2622, 2675
BstH2I	RGCGCY	4 cut(s)	429, 887, 2656, 2756
BstHHI	GCGC	7 cut(s)	428, 886, 1937, 2622, 2655, 2677, 2755
BstKTI	GATC	5 cut(s)	132, 277, 445, 1800, 1814
BstMAI	GTCTC	7 cut(s)	345, 382, 655, 830, 1144, 1229, 2614
BstMBI	GATC	5 cut(s)	129, 274, 442, 1797, 1811
BstMCI	CGRYCG	3 cut(s)	338, 433, 445
BstNI	CCWGG	4 cut(s)	115, 451, 1294, 2548
BstNSI	RCATGY	3 cut(s)	1882, 1924, 2113
BstPAI	GACNNNNGTC	1 cut(s)	2621
BstSCI	CCNGG	7 cut(s)	113, 449, 645, 1292, 1855, 1984, 2546
BstSFI	CTRYAG	1 cut(s)	1563
BstSLI	GKGCMC	4 cut(s)	240, 652, 972, 2722
BstUI	CGCG	4 cut(s)	32, 2620, 2622, 2675
BstV1I	GCAGC	5 cut(s)	263, 893, 942, 2050, 2664
BstV2I	GAAGAC	2 cut(s)	308, 1079
BstX2I	RGATCY	1 cut(s)	274
BstXI	CCANNNNNNTGG	2 cut(s)	1956, 2236
BstYI	RGATCY	1 cut(s)	274
BstZI	CGGCCG	1 cut(s)	430
BtgI	CCRYGG	2 cut(s)	30, 2235
BtrI	CACGTC	1 cut(s)	1416
BtsCI	GGATG	5 cut(s)	25, 213, 1758, 1960, 2683
BtsI	GCAGTG	3 cut(s)	459, 1770, 1871
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	8 cut(s)	285, 294, 430, 634, 638, 960, 1869, 1913
CaiI	CAGNNNCTG	2 cut(s)	1015, 1027
CfoI	GCGC	7 cut(s)	428, 886, 1937, 2622, 2655, 2677, 2755
Cfr10I	RCCGGY	4 cut(s)	428, 632, 1768, 2722
Cfr13I	GGNCC	7 cut(s)	89, 447, 522, 2156, 2226, 2397, 2772
Cfr42I	CCGCGG	1 cut(s)	33
CseI	GACGC	7 cut(s)	370, 383, 672, 788, 1993, 2611, 2626
CsiI	ACCWGGT	1 cut(s)	449
CspCI	CAANNNNNGTGG	2 cut(s)	655, 690
DinI	GGCGCC	2 cut(s)	427, 2654
DpnI	GATC	5 cut(s)	131, 276, 444, 1799, 1813
DpnII	GATC	5 cut(s)	129, 274, 442, 1797, 1811
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
EaeI	YGGCCR	5 cut(s)	231, 265, 294, 430, 1578
EagI	CGGCCG	1 cut(s)	430
Eam1104I	CTCTTC	6 cut(s)	143, 470, 586, 593, 891, 1984
EarI	CTCTTC	6 cut(s)	143, 470, 586, 593, 891, 1984
EciI	GGCGGA	1 cut(s)	496
Ecl136II	GAGCTC	1 cut(s)	105
EclXI	CGGCCG	1 cut(s)	430
Eco130I	CCWWGG	3 cut(s)	498, 1586, 2235
Eco147I	AGGCCT	2 cut(s)	191, 503
Eco24I	GRGCYC	2 cut(s)	107, 2441
Eco31I	GGTCTC	1 cut(s)	382
Eco47I	GGWCC	5 cut(s)	89, 447, 2156, 2397, 2772
Eco47III	AGCGCT	1 cut(s)	885
Eco52I	CGGCCG	1 cut(s)	430
Eco53kI	GAGCTC	1 cut(s)	105
Eco57I	CTGAAG	4 cut(s)	410, 1049, 1646, 2555
Eco88I	CYCGRG	2 cut(s)	100, 2021
EcoICRI	GAGCTC	1 cut(s)	105
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoO109I	RGGNCCY	2 cut(s)	2397, 2772
EcoRI	GAATTC	1 cut(s)	707
EcoRII	CCWGG	4 cut(s)	113, 449, 1292, 2546
EcoT14I	CCWWGG	3 cut(s)	498, 1586, 2235
EcoT22I	ATGCAT	1 cut(s)	602
EcoT38I	GRGCYC	2 cut(s)	107, 2441
EgeI	GGCGCC	2 cut(s)	427, 2654
EheI	GGCGCC	2 cut(s)	427, 2654
ErhI	CCWWGG	3 cut(s)	498, 1586, 2235
Esp3I	CGTCTC	2 cut(s)	345, 655
FalI	AAGNNNNNCTT	4 cut(s)	1070, 1102, 1595, 1627
FaqI	GGGAC	2 cut(s)	1313, 2629
FauI	CCCGC	1 cut(s)	1904
FbaI	TGATCA	1 cut(s)	1797
FblI	GTMKAC	2 cut(s)	1683, 2661
Fnu4HI	GCNGC	8 cut(s)	252, 882, 956, 1622, 1889, 1938, 2039, 2678
FokI	GGATG	5 cut(s)	32, 200, 1765, 1947, 2670
FriOI	GRGCYC	2 cut(s)	107, 2441
Fsp4HI	GCNGC	8 cut(s)	252, 882, 956, 1622, 1889, 1938, 2039, 2678
FspBI	CTAG	7 cut(s)	95, 156, 165, 744, 2294, 2324, 2809
GlaI	GCGC	7 cut(s)	427, 885, 1936, 2621, 2654, 2676, 2754
GluI	GCNGC	8 cut(s)	252, 882, 956, 1622, 1889, 1938, 2039, 2678
GsaI	CCCAGC	2 cut(s)	523, 2133
GsuI	CTGGAG	2 cut(s)	97, 734
HaeII	RGCGCY	4 cut(s)	429, 887, 2656, 2756
HgaI	GACGC	7 cut(s)	370, 383, 672, 788, 1993, 2611, 2626
HhaI	GCGC	7 cut(s)	428, 886, 1937, 2622, 2655, 2677, 2755
Hin1I	GRCGYC	4 cut(s)	426, 780, 2196, 2653
Hin6I	GCGC	7 cut(s)	426, 884, 1935, 2620, 2653, 2675, 2753
HinP1I	GCGC	7 cut(s)	426, 884, 1935, 2620, 2653, 2675, 2753
HincII	GTYRAC	2 cut(s)	1533, 1930
HindII	GTYRAC	2 cut(s)	1533, 1930
HindIII	AAGCTT	1 cut(s)	2406
HphI	GGTGA	5 cut(s)	484, 605, 689, 1974, 2552
Hpy166II	GTNNAC	9 cut(s)	238, 970, 1156, 1533, 1684, 1930, 2008, 2530, 2662
Hpy8I	GTNNAC	9 cut(s)	238, 970, 1156, 1533, 1684, 1930, 2008, 2530, 2662
HpyAV	CCTTC	5 cut(s)	70, 305, 1520, 2082, 2531
HpyCH4III	ACNGT	8 cut(s)	242, 529, 985, 1455, 2050, 2156, 2519, 2714
HpyCH4IV	ACGT	6 cut(s)	195, 436, 538, 1415, 2196, 2319
HpySE526I	ACGT	6 cut(s)	195, 436, 538, 1415, 2196, 2319
Hsp92I	GRCGYC	4 cut(s)	426, 780, 2196, 2653
HspAI	GCGC	7 cut(s)	426, 884, 1935, 2620, 2653, 2675, 2753
KasI	GGCGCC	2 cut(s)	425, 2652
Kpn2I	TCCGGA	1 cut(s)	277
KpnI	GGTACC	1 cut(s)	1069
KroI	GCCGGC	2 cut(s)	428, 632
KroNI	GCCGGC	2 cut(s)	430, 634
Ksp22I	TGATCA	1 cut(s)	1797
KspI	CCGCGG	1 cut(s)	33
Kzo9I	GATC	5 cut(s)	129, 274, 442, 1797, 1811
LguI	GCTCTTC	2 cut(s)	470, 891
Lsp1109I	GCAGC	5 cut(s)	263, 893, 942, 2050, 2664
LweI	GCATC	6 cut(s)	693, 1110, 1827, 1969, 2533, 2689
MabI	ACCWGGT	1 cut(s)	449
MaeI	CTAG	7 cut(s)	95, 156, 165, 744, 2294, 2324, 2809
MaeII	ACGT	6 cut(s)	195, 436, 538, 1415, 2196, 2319
MaeIII	GTNAC	4 cut(s)	11, 979, 1266, 2422
MalI	GATC	5 cut(s)	131, 276, 444, 1799, 1813
MbiI	CCGCTC	1 cut(s)	1911
MboI	GATC	5 cut(s)	129, 274, 442, 1797, 1811
MfeI	CAATTG	2 cut(s)	2647, 2747
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	8 cut(s)	107, 240, 652, 972, 1408, 2170, 2441, 2722
MlsI	TGGCCA	3 cut(s)	267, 296, 1580
MluNI	TGGCCA	3 cut(s)	267, 296, 1580
Mly113I	GGCGCC	2 cut(s)	426, 2653
MlyI	GAGTC	8 cut(s)	41, 218, 298, 626, 734, 1015, 1027, 2026
MmeI	TCCRAC	4 cut(s)	69, 876, 1351, 1369
Mox20I	TGGCCA	3 cut(s)	267, 296, 1580
Mph1103I	ATGCAT	1 cut(s)	602
MreI	CGCCGGCG	1 cut(s)	632
MroI	TCCGGA	1 cut(s)	277
MroNI	GCCGGC	2 cut(s)	428, 632
MroXI	GAANNNNTTC	2 cut(s)	80, 539
MscI	TGGCCA	3 cut(s)	267, 296, 1580
MseI	TTAA	2 cut(s)	1710, 2343
MslI	CAYNNNNRTG	5 cut(s)	18, 605, 1954, 2062, 2234
Msp20I	TGGCCA	3 cut(s)	267, 296, 1580
MspA1I	CMGCKG	3 cut(s)	32, 87, 1624
MspR9I	CCNGG	7 cut(s)	115, 451, 647, 1294, 1857, 1986, 2548
MunI	CAATTG	2 cut(s)	2647, 2747
Mva1269I	GAATGC	2 cut(s)	602, 1568
MvaI	CCWGG	4 cut(s)	115, 451, 1294, 2548
MvnI	CGCG	4 cut(s)	32, 2620, 2622, 2675
NaeI	GCCGGC	2 cut(s)	430, 634
NarI	GGCGCC	2 cut(s)	426, 2653
NciI	CCSGG	3 cut(s)	647, 1857, 1986
NcoI	CCATGG	1 cut(s)	2235
NdeII	GATC	5 cut(s)	129, 274, 442, 1797, 1811
NgoMIV	GCCGGC	2 cut(s)	428, 632
NlaIV	GGNNCC	8 cut(s)	276, 427, 749, 1067, 2227, 2399, 2654, 2721
NmeAIII	GCCGAG	3 cut(s)	1022, 2014, 2720
NmuCI	GTSAC	3 cut(s)	11, 979, 2422
NsiI	ATGCAT	1 cut(s)	602
NspI	RCATGY	3 cut(s)	1882, 1924, 2113
NspV	TTCGAA	1 cut(s)	1953
PaeR7I	CTCGAG	1 cut(s)	100
PceI	AGGCCT	2 cut(s)	191, 503
PciI	ACATGT	2 cut(s)	1878, 1920
PciSI	GCTCTTC	2 cut(s)	470, 891
PcsI	WCGNNNNNNNCGW	5 cut(s)	183, 192, 216, 335, 735
PctI	GAATGC	2 cut(s)	602, 1568
PdiI	GCCGGC	2 cut(s)	430, 634
PdmI	GAANNNNTTC	2 cut(s)	80, 539
PfeI	GAWTC	6 cut(s)	792, 1435, 1834, 2220, 2461, 2575
PflFI	GACNNNGTC	1 cut(s)	451
PflMI	CCANNNNNTGG	3 cut(s)	120, 519, 1587
PfoI	TCCNGGA	1 cut(s)	1855
PkrI	GCNGC	8 cut(s)	253, 883, 957, 1623, 1890, 1939, 2040, 2679
Ple19I	CGATCG	1 cut(s)	445
PleI	GAGTC	8 cut(s)	41, 218, 298, 625, 734, 1014, 1026, 2026
PluTI	GGCGCC	2 cut(s)	429, 2656
PpsI	GAGTC	8 cut(s)	41, 218, 298, 625, 734, 1014, 1026, 2026
Ppu21I	YACGTR	1 cut(s)	196
PpuMI	RGGWCCY	2 cut(s)	2397, 2772
PscI	ACATGT	2 cut(s)	1878, 1920
PshAI	GACNNNNGTC	1 cut(s)	2621
Psp124BI	GAGCTC	1 cut(s)	107
Psp1406I	AACGTT	1 cut(s)	538
Psp5II	RGGWCCY	2 cut(s)	2397, 2772
Psp6I	CCWGG	4 cut(s)	113, 449, 1292, 2546
PspFI	CCCAGC	2 cut(s)	519, 2129
PspGI	CCWGG	4 cut(s)	113, 449, 1292, 2546
PspN4I	GGNNCC	8 cut(s)	276, 427, 749, 1067, 2227, 2399, 2654, 2721
PspPI	GGNCC	7 cut(s)	89, 447, 522, 2156, 2226, 2397, 2772
PspPPI	RGGWCCY	2 cut(s)	2397, 2772
PspXI	VCTCGAGB	1 cut(s)	100
PstNI	CAGNNNCTG	2 cut(s)	1015, 1027
PsuI	RGATCY	1 cut(s)	274
PsyI	GACNNNGTC	1 cut(s)	451
PvuI	CGATCG	1 cut(s)	445
RseI	CAYNNNNRTG	5 cut(s)	18, 605, 1954, 2062, 2234
SacI	GAGCTC	1 cut(s)	107
SacII	CCGCGG	1 cut(s)	33
SapI	GCTCTTC	2 cut(s)	470, 891
SaqAI	TTAA	2 cut(s)	1710, 2343
SatI	GCNGC	8 cut(s)	252, 882, 956, 1622, 1889, 1938, 2039, 2678
Sau3AI	GATC	5 cut(s)	129, 274, 442, 1797, 1811
Sau96I	GGNCC	7 cut(s)	89, 447, 522, 2156, 2226, 2397, 2772
ScaI	AGTACT	2 cut(s)	163, 1082
SchI	GAGTC	8 cut(s)	41, 218, 298, 626, 734, 1015, 1027, 2026
ScrFI	CCNGG	7 cut(s)	115, 451, 647, 1294, 1857, 1986, 2548
SduI	GDGCHC	8 cut(s)	107, 240, 652, 972, 1408, 2170, 2441, 2722
SexAI	ACCWGGT	1 cut(s)	449
SfaNI	GCATC	6 cut(s)	693, 1110, 1827, 1969, 2533, 2689
SfcI	CTRYAG	1 cut(s)	1563
SfoI	GGCGCC	2 cut(s)	427, 2654
Sfr274I	CTCGAG	1 cut(s)	100
Sfr303I	CCGCGG	1 cut(s)	33
SfuI	TTCGAA	1 cut(s)	1953
SgrAI	CRCCGGYG	1 cut(s)	632
SgrBI	CCGCGG	1 cut(s)	33
SinI	GGWCC	5 cut(s)	89, 447, 2156, 2397, 2772
SlaI	CTCGAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	5 cut(s)	18, 605, 1954, 2062, 2234
SmlI	CTYRAG	4 cut(s)	100, 482, 1838, 2042
SmoI	CTYRAG	4 cut(s)	100, 482, 1838, 2042
SpeI	ACTAGT	1 cut(s)	155
SseBI	AGGCCT	2 cut(s)	191, 503
SspDI	GGCGCC	2 cut(s)	425, 2652
SspMI	CTAG	7 cut(s)	95, 156, 165, 744, 2294, 2324, 2809
SstI	GAGCTC	1 cut(s)	107
StuI	AGGCCT	2 cut(s)	191, 503
StyD4I	CCNGG	7 cut(s)	113, 449, 645, 1292, 1855, 1984, 2546
StyI	CCWWGG	3 cut(s)	498, 1586, 2235
TaaI	ACNGT	8 cut(s)	242, 529, 985, 1455, 2050, 2156, 2519, 2714
TaiI	ACGT	6 cut(s)	198, 439, 541, 1418, 2199, 2322
TaqII	GACCGA	1 cut(s)	967
TatI	WGTACW	5 cut(s)	161, 1080, 1155, 1170, 1917
TauI	GCSGC	3 cut(s)	1624, 1891, 1940
TfiI	GAWTC	6 cut(s)	792, 1435, 1834, 2220, 2461, 2575
Tru1I	TTAA	2 cut(s)	1710, 2343
Tru9I	TTAA	2 cut(s)	1710, 2343
TseFI	GTSAC	3 cut(s)	11, 979, 2422
TseI	GCWGC	5 cut(s)	251, 881, 955, 2038, 2677
Tsp45I	GTSAC	3 cut(s)	11, 979, 2422
TspDTI	ATGAA	5 cut(s)	478, 623, 1343, 2285, 2783
TspGWI	ACGGA	2 cut(s)	1460, 2178
Tth111I	GACNNNGTC	1 cut(s)	451
Van91I	CCANNNNNTGG	3 cut(s)	120, 519, 1587
VneI	GTGCAC	2 cut(s)	236, 968
VpaK11BI	GGWCC	5 cut(s)	89, 447, 2156, 2397, 2772
XagI	CCTNNNNNAGG	1 cut(s)	112
XapI	RAATTY	5 cut(s)	707, 1160, 1244, 2272, 2803
XceI	RCATGY	3 cut(s)	1882, 1924, 2113
XcmI	CCANNNNNNNNNTGG	4 cut(s)	304, 1059, 1318, 2591
XhoI	CTCGAG	1 cut(s)	100
XmiI	GTMKAC	2 cut(s)	1683, 2661
XmnI	GAANNNNTTC	2 cut(s)	80, 539
XspI	CTAG	7 cut(s)	95, 156, 165, 744, 2294, 2324, 2809
ZraI	GACGTC	1 cut(s)	2197
ZrmI	AGTACT	2 cut(s)	163, 1082
Zsp2I	ATGCAT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.