Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005807

Physical Location & Seq

Genomic Coordinates Forward (+)

60542880 .. 60546458

Gene Structure 3579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG347400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTCTAATTGCATCCCAGTTCTGCTCATTTCTCTCTTGTTTCTGTTACTCAACTCCGCTCTGGCCGATCCACGAGCGACGGAGGCGGCTCTGATATGTACAAACGACACCGCTTTGGTGGCACAGAGACAGTCCTTCATAGCCAACTTCCTGGCAGCCCTGGACACGCTGACCCCTCTCATTTCCCGCCAAAAGTACGCTGCCGTCGTCAACGGCACCGGAAACACCACCGTGTACGCTTTCGGCGAGTGCATGAGAGATCTTTCTCAAACAGACTGCAACCTCTGCTTTGCTCAGTGCAAGACACAGATTCTGAGGTGCCTGCCGTTTCAGAAGGCCACTCGTGGGGGTAGGCTTTTCTACGACGGGTGTTATCTCCGGTACGACGACTTCAATTTCTTTAATCAGAGTTTGAGCGCCCAAGACACGAGTGTCTGTGGGGTTAACAATTTTGGTGGGAATCAAACGGTTTTTAAAGCTAATGCATTGGAATTGGTGAAGAATTTGAGCGTGGAAGCTGCCAAGAATGATGGGTTTTTTGTTGGGTCTGTGAATCGGCGGAATGTAACGGTTTATGGGTTGGCTCAGTGTTGGGAATTGCTGAATGGCTCTGCTTGTGAGAAGTGTTTGAGTGACACAGTCACTAGAATCGGGTCCTGCCCTCCGAAAGAAGAAGGGAGGGTCTTGAATGCTGGCTGTTACTTGAGGTATTCCACCCAGAAGTTTTATAATAACAATACGGTGACGGATGGAGGAGGAAATGGAGGACACAATCACTTGGCTATAATTTTGGCTATAACATCTGCTGCATTTGCTCTTGTGCTGGCTATTTCCGCCTTTGCTTTCTGGGGAAGGAAGAAGTTTCTGAAGAAAAGGAAAGAGAAAAAGCATCTAGGTGCTCTGTTTTCCATTGTGAACAAGTCCCAACTCAATTATTCATATGAAGTTCTTGAAAATGCCACCAATTACTTCCATGATTCTAACAAGCTTGGACAAGGAGGCTCTGGTTCAGTTTACAAAGTAATTTTTCATTTCAGCAATTTCTTTCCTACTCTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

353

Amino Acids

38.78

Weight (kDa)

8.93

Isoelectric Point (pI)

28.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	33 - 130	3.8e-13	Salt stress response/antifungal
Stress-antifung	PF01657	149 - 240	6.5e-16	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70530 AT1G70530 AT1G70530
fragaria_vesca	FvH4_4g26070 FvH4_4g26070 FvH4_4g26070 FvH4_4g26070 FvH4_4g26070 FvH4_4g26070 FvH4_4g26070 FvH4_4g26070
malus_domestica	MD13G1096600.v1.1 MD16G1097600.v1.1
prunus_persica	Prupe.1G249300_v2.0.a1
pyrus_communis	pycom13g08420 pycom16g08300
rosa_chinensis	RchiOBHm_Chr4g0433521
rosa_laevigata	RLG00000006746
rosa_multiflora	Rmu_co8500781.1_g000001 Rmu_sc0000312.1_g000008
rosa_roxburghii	Rroxscaffold_5G00375040
rosa_rugosa	Rorug04G0269300
rosa_samantha	Rh4AG324000 Rh4BG332100 Rh4CG347400 Rh4DG328400
rosa_wichuraiana	Rw0G020160 Rw4G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	729
AasI	GACNNNNNNGTC	1 cut(s)	431
AccB1I	GGYRCC	2 cut(s)	215, 318
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	6 cut(s)	57, 86, 111, 187, 559, 834
AclWI	GGATC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	502
AcuI	CTGAAG	1 cut(s)	887
AfaI	GTAC	4 cut(s)	100, 197, 236, 383
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	394, 688, 953
AjnI	CCWGG	2 cut(s)	150, 159
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	479, 518, 988
AluI	AGCT	3 cut(s)	479, 518, 988
Alw21I	GWGCWC	1 cut(s)	901
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	62
AlwNI	CAGNNNCTG	1 cut(s)	313
AoxI	GGCC	2 cut(s)	63, 336
ApeKI	GCWGC	4 cut(s)	155, 200, 518, 806
ApoI	RAATTY	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	654
AsuHPI	GGTGA	2 cut(s)	508, 754
AvaII	GGWCC	1 cut(s)	654
BanI	GGYRCC	2 cut(s)	215, 318
BarI	GAAGNNNNNNTAC	2 cut(s)	374, 406
BauI	CACGAG	3 cut(s)	72, 342, 427
Bbv12I	GWGCWC	1 cut(s)	901
BbvI	GCAGC	4 cut(s)	167, 187, 505, 793
BccI	CCATC	2 cut(s)	524, 743
BceAI	ACGGC	3 cut(s)	188, 229, 310
BciT130I	CCWGG	2 cut(s)	152, 161
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	2 cut(s)	645, 893
BfoI	RGCGCY	1 cut(s)	420
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	5 cut(s)	87, 156, 201, 519, 807
BlsI	GCNGC	5 cut(s)	88, 157, 202, 520, 808
Bme1390I	CCNGG	2 cut(s)	152, 161
Bme18I	GGWCC	1 cut(s)	654
BmgT120I	GGNCC	1 cut(s)	654
BmiI	GGNNCC	3 cut(s)	217, 320, 655
BmrFI	CCNGG	2 cut(s)	152, 161
BmrI	ACTGGG	1 cut(s)	11
BmsI	GCATC	2 cut(s)	21, 898
BmuI	ACTGGG	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	724
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	2 cut(s)	218, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	17
BseBI	CCWGG	2 cut(s)	152, 161
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	2 cut(s)	12, 754
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	3 cut(s)	305, 308, 599
BseNI	ACTGG	1 cut(s)	17
BseRI	GAGGAG	1 cut(s)	768
BseXI	GCAGC	4 cut(s)	167, 187, 505, 793
BshFI	GGCC	2 cut(s)	65, 338
BshNI	GGYRCC	2 cut(s)	215, 318
BsiHKAI	GWGCWC	1 cut(s)	901
BsiSI	CCGG	2 cut(s)	219, 379
BslFI	GGGAC	1 cut(s)	907
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	907
BsmI	GAATGC	1 cut(s)	694
BsnI	GGCC	2 cut(s)	65, 338
Bsp1286I	GDGCHC	1 cut(s)	901
Bsp1407I	TGTACA	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	67, 259
BspACI	CCGC	6 cut(s)	57, 86, 111, 187, 559, 834
BspANI	GGCC	2 cut(s)	65, 338
BspCNI	CTCAG	3 cut(s)	306, 307, 598
BspLI	GGNNCC	3 cut(s)	217, 320, 655
BspPI	GGATC	1 cut(s)	62
BspT107I	GGYRCC	2 cut(s)	215, 318
BsrBI	CCGCTC	1 cut(s)	59
BsrGI	TGTACA	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	67, 259
BssSI	CACGAG	3 cut(s)	72, 342, 427
Bst2BI	CACGAG	3 cut(s)	72, 342, 427
Bst2UI	CCWGG	2 cut(s)	152, 161
Bst4CI	ACNGT	6 cut(s)	132, 232, 469, 571, 640, 742
BstAPI	GCANNNNNTGC	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	98
BstC8I	GCNNGC	3 cut(s)	323, 694, 825
BstDEI	CTNAG	3 cut(s)	294, 314, 585
BstF5I	GGATG	2 cut(s)	12, 754
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	2 cut(s)	70, 262
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	2 cut(s)	67, 259
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 119, 285, 812, 833
BstNI	CCWGG	2 cut(s)	152, 161
BstSCI	CCNGG	2 cut(s)	150, 159
BstV1I	GCAGC	4 cut(s)	167, 187, 505, 793
BstX2I	RGATCY	1 cut(s)	259
BstXI	CCANNNNNNTGG	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	65, 338
BtsCI	GGATG	2 cut(s)	12, 754
BtsIMutI	CAGTG	2 cut(s)	302, 593
Cac8I	GCNNGC	3 cut(s)	323, 694, 825
CaiI	CAGNNNCTG	1 cut(s)	313
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	654
Csp6I	GTAC	4 cut(s)	99, 196, 235, 382
CspCI	CAANNNNNGTGG	2 cut(s)	436, 471
CviAII	CATG	2 cut(s)	253, 974
CviQI	GTAC	4 cut(s)	99, 196, 235, 382
DdeI	CTNAG	3 cut(s)	294, 314, 585
DpnI	GATC	2 cut(s)	69, 261
DpnII	GATC	2 cut(s)	67, 259
DraI	TTTAAA	1 cut(s)	475
DrdI	GACNNNNNNGTC	1 cut(s)	431
DseDI	GACNNNNNNGTC	1 cut(s)	431
EaeI	YGGCCR	1 cut(s)	63
EciI	GGCGGA	2 cut(s)	574, 823
Eco47I	GGWCC	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	887
EcoO109I	RGGNCCY	1 cut(s)	654
EcoRII	CCWGG	2 cut(s)	150, 159
EcoT22I	ATGCAT	1 cut(s)	487
FaeI	CATG	2 cut(s)	256, 977
FaqI	GGGAC	1 cut(s)	907
FatI	CATG	2 cut(s)	252, 973
FauI	CCCGC	1 cut(s)	194
FauNDI	CATATG	1 cut(s)	940
Fnu4HI	GCNGC	5 cut(s)	87, 156, 201, 519, 807
FokI	GGATG	1 cut(s)	761
Fsp4HI	GCNGC	5 cut(s)	87, 156, 201, 519, 807
FspBI	CTAG	2 cut(s)	645, 893
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	5 cut(s)	87, 156, 201, 519, 807
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	65, 338
HapII	CCGG	2 cut(s)	219, 379
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	2 cut(s)	256, 977
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HincII	GTYRAC	2 cut(s)	211, 445
HindII	GTYRAC	2 cut(s)	211, 445
HindIII	AAGCTT	1 cut(s)	986
HinfI	GANTC	5 cut(s)	310, 460, 553, 648, 977
HpaI	GTTAAC	1 cut(s)	445
HpaII	CCGG	2 cut(s)	219, 379
HphI	GGTGA	2 cut(s)	508, 754
Hpy166II	GTNNAC	5 cut(s)	211, 235, 445, 916, 1015
Hpy188I	TCNGA	6 cut(s)	93, 315, 333, 408, 666, 867
Hpy188III	TCNNGA	2 cut(s)	685, 950
Hpy8I	GTNNAC	5 cut(s)	211, 235, 445, 916, 1015
Hpy99I	CGWCG	4 cut(s)	82, 209, 368, 389
HpyAV	CCTTC	4 cut(s)	145, 328, 668, 846
HpyCH4III	ACNGT	6 cut(s)	132, 232, 469, 571, 640, 742
HpyCH4V	TGCA	6 cut(s)	12, 252, 279, 300, 485, 809
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 119, 285, 812, 833
HpyF3I	CTNAG	3 cut(s)	294, 314, 585
Hsp92II	CATG	2 cut(s)	256, 977
HspAI	GCGC	1 cut(s)	417
KspAI	GTTAAC	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	67, 259
Lsp1109I	GCAGC	4 cut(s)	167, 187, 505, 793
LweI	GCATC	2 cut(s)	21, 898
MaeI	CTAG	2 cut(s)	645, 893
MaeIII	GTNAC	6 cut(s)	45, 565, 632, 640, 698, 742
MalI	GATC	2 cut(s)	69, 261
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	2 cut(s)	67, 259
MboII	GAAGA	4 cut(s)	511, 683, 868, 880
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	901
Mph1103I	ATGCAT	1 cut(s)	487
MseI	TTAA	3 cut(s)	402, 444, 474
MslI	CAYNNNNRTG	2 cut(s)	230, 894
MspI	CCGG	2 cut(s)	219, 379
MspR9I	CCNGG	2 cut(s)	152, 161
Mva1269I	GAATGC	1 cut(s)	694
MvaI	CCWGG	2 cut(s)	152, 161
MwoI	GCNNNNNNNGC	5 cut(s)	83, 119, 285, 812, 833
NdeI	CATATG	1 cut(s)	940
NdeII	GATC	2 cut(s)	67, 259
NlaIII	CATG	2 cut(s)	256, 977
NlaIV	GGNNCC	3 cut(s)	217, 320, 655
NmuCI	GTSAC	3 cut(s)	632, 640, 742
NsiI	ATGCAT	1 cut(s)	487
OliI	CACNNNNGTG	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 243
PctI	GAATGC	1 cut(s)	694
PfeI	GAWTC	5 cut(s)	310, 460, 553, 648, 977
PflFI	GACNNNGTC	1 cut(s)	638
PkrI	GCNGC	5 cut(s)	88, 157, 202, 520, 808
PpuMI	RGGWCCY	1 cut(s)	654
PsiI	TTATAA	1 cut(s)	729
Psp5II	RGGWCCY	1 cut(s)	654
Psp6I	CCWGG	2 cut(s)	150, 159
PspGI	CCWGG	2 cut(s)	150, 159
PspN4I	GGNNCC	3 cut(s)	217, 320, 655
PspPI	GGNCC	1 cut(s)	654
PspPPI	RGGWCCY	1 cut(s)	654
PstNI	CAGNNNCTG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	259
PsyI	GACNNNGTC	1 cut(s)	638
RsaI	GTAC	4 cut(s)	100, 197, 236, 383
RsaNI	GTAC	4 cut(s)	99, 196, 235, 382
RseI	CAYNNNNRTG	2 cut(s)	230, 894
SaqAI	TTAA	3 cut(s)	402, 444, 474
SatI	GCNGC	5 cut(s)	87, 156, 201, 519, 807
Sau3AI	GATC	2 cut(s)	67, 259
Sau96I	GGNCC	1 cut(s)	654
ScrFI	CCNGG	2 cut(s)	152, 161
SduI	GDGCHC	1 cut(s)	901
SetI	ASST	7 cut(s)	285, 320, 481, 520, 710, 898, 990
SfaNI	GCATC	2 cut(s)	21, 898
SinI	GGWCC	1 cut(s)	654
SmiMI	CAYNNNNRTG	2 cut(s)	230, 894
SmlI	CTYRAG	1 cut(s)	703
SmoI	CTYRAG	1 cut(s)	703
SsiI	CCGC	6 cut(s)	57, 86, 111, 187, 559, 834
SspMI	CTAG	2 cut(s)	645, 893
StyD4I	CCNGG	2 cut(s)	150, 159
TaaI	ACNGT	6 cut(s)	132, 232, 469, 571, 640, 742
TatI	WGTACW	1 cut(s)	98
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	5 cut(s)	310, 460, 553, 648, 977
Tru1I	TTAA	3 cut(s)	402, 444, 474
Tru9I	TTAA	3 cut(s)	402, 444, 474
TscAI	CASTG	2 cut(s)	302, 593
TseFI	GTSAC	3 cut(s)	632, 640, 742
TseI	GCWGC	4 cut(s)	155, 200, 518, 806
Tsp45I	GTSAC	3 cut(s)	632, 640, 742
TspDTI	ATGAA	4 cut(s)	127, 927, 957, 1019
TspGWI	ACGGA	2 cut(s)	95, 761
TspRI	CASTG	2 cut(s)	302, 593
Tth111I	GACNNNGTC	1 cut(s)	638
VpaK11BI	GGWCC	1 cut(s)	654
XapI	RAATTY	1 cut(s)	502
XspI	CTAG	2 cut(s)	645, 893
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.