Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001832

Physical Location & Seq

Genomic Coordinates Forward (+)

27619808 .. 27623055

Gene Structure 3248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26070.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGTTTAATTTCTCCCCTGTTCTCCTCCTTTCTCTGTTTCTGCTACTTAACTCCGCTCTCGCCGATCCTCGAGCCACCGAAGCGGCTCTGATATGCACAAACGACACGGCTCTGACCTCACAAAGACAGTCCTTCATAGCCAACTTCTTGGCAGCTCTCGACACGCTGACGCCCCTCATTTCCCGCCAAAAATACGCTGCCGTCGTCAACGGCACCGGAAACACCACCGTCTACGCTTTCGGAGAGTGCATGAGAGATCTTTCTAAAACAGACTGCGACCTCTGCTTTGCTCAGTGCAAGACGCAGATTCTGAGGTGCCTTCCGTTTCAAAAGGCCACTCTTGGGGGTAGGCTTTTCTTTGACGGCTGTTATCTCCGGTACGACGACTTCGATTTCTTTAATCAGAGCTTGAGCACCGAAGACAAGAGTGTCTGTGGGGTTAACAGCTTTGTTGGGAACCAAACAGTGTTTAAAGCTAATGCATTGGAATTGGTGAAGAATTTGAGCGTGGAAGCTACTAGGAATGATGGGTTCTTTGTTGGGTCTGTGAATAAGGGGAATGTGACGGTTTATGGGTTGGCTCAGTGTTGGGAATCGGTGAATGGATCTGCTTGTGAGAAGTGTTTGAGTGACACAGTCATTAGAATAGGGTCGTGTCCTCCGAAAGAAGAAGGGAGGGTCTTGAATGCTGGCTGTTACTTGAGGTATTCGACCCAGAAGTTTTATAACAACAATACCGAGACCAGTGATGGAAATGGAGGACACAATCACTTGGGTATGATTTTGGCTGTAACATCTGCTGCATTTGCTCTTATGCTGGCTATTTCCGCCTTTGCTTTCTTGACAAGGAAGAAATTGGTGAAGAAGAGGAAAGAAAAGAAGCAACTAGGTGCTCTGTTGTCCATAGTGAACAAGTCCCAACTCAATTATTCATATGAAGTACTTGAAAATGCCACCAATTACTTCCATGATTCTAACAAGCTGGGACAAGGAGGATCTGGTTCAGTTTACAAAGGAGTTTTGCCAGATGGAAAGGTTGTTGCCATAAAGAGGTTGTTCTTCAATACAAGACAATGGGTGGATCATTTCTTCAATGAAGTCAATTTGATCAGTGGAATCCATCACAAAAATCTTGTAAAGCTATTGGGATGCAGCATTACAGGCCCTGAAAGCCTTCTTGTTTATGAGTATGTTCCAAATCAAAGCCTTCATGATTATTTTAGTGTGAAAAATAATCTTGAGCCACTAAGGTGGGAACTGAGGTCTAAGATCATATTGGGGACAGCTGAGGGCTTGGCATATCTACATGAAGAATCCAAAGTGAGAATCATTCATAGGGATATAAAGTTGAGCAACATCCTGCTCGATGAGAACTTCATGCCAAAGATTGCAGATTTTGGACTTGCTAGATTATTTCCTGAAGATAAAACCCACATTAGTACTGCCATTGCAGGCACATTAGGTTATATGGCTCCTGAATATGTCACTCGTGGCAAGTTGACGGAGAAGGCAGACGTTTACAGTTTTGGAGTTCTTGTCATTGAAATCATATCTGGGAAGAGGATCAATAGCTTTGCATCAAATTCTGTTTCTATCCTACAGGCGATCAGCTATGTAATGCAGTTGATCCAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

546

Amino Acids

60.43

Weight (kDa)

8.6

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	32 - 129	3.7e-12	Salt stress response/antifungal
Stress-antifung	PF01657	151 - 239	1.6e-15	Salt stress response/antifungal
Pkinase	PF00069	322 - 528	9.5e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	325 - 583	4.9e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40380 AT5G40380 AT5G40380
fragaria_vesca	FvH4_4g26070 FvH4_5g05520 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060
malus_domestica	MD14G1177300.v1.1 MD17G1031100.v1.1
prunus_persica	Prupe.3G288600_v2.0.a1 Prupe.5G171200_v2.0.a1
pyrus_communis	pycom14g14810 pycom17g02850
rosa_chinensis	RchiOBHm_Chr2g0089301 RchiOBHm_Chr2g0172611 RchiOBHm_Chr7g0193291
rosa_laevigata	RLG00000004281 RLG00000022120 RLG00000022121 RLG00000022125
rosa_multiflora	Rmu_co8025498.1_g000001 Rmu_sc0017093.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079690 Rroxscaffold_2G00079700 Rroxscaffold_3G00262230
rosa_rugosa	Rorug01G0488900 Rorug02G0246100 Rorug02G0560300 Rorug02G0560400 Rorug07G0008700
rosa_samantha	Rh2AG636700 Rh2AG636900 Rh2BG650100 Rh2BG650300 Rh2CG616800 Rh2CG616900 Rh2DG664300 Rh2DG664400 Rh7BG135300 Rh7CG138300 Rh7DG136300
rosa_wichuraiana	Rw2G052660 Rw2G052670 Rw7G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	726
AasI	GACNNNNNNGTC	1 cut(s)	428
AccB1I	GGYRCC	2 cut(s)	212, 315
AccBSI	CCGCTC	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	4 cut(s)	54, 83, 184, 828
AclWI	GGATC	6 cut(s)	59, 613, 1003, 1089, 1571, 1621
AcsI	RAATTY	2 cut(s)	499, 1582
AcuI	CTGAAG	1 cut(s)	1440
AcyI	GRCGYC	1 cut(s)	170
AfaI	GTAC	3 cut(s)	380, 942, 1441
AfiI	CCNNNNNNNGG	2 cut(s)	342, 1050
AgsI	TTSAA	6 cut(s)	329, 685, 947, 1063, 1093, 1544
AleI	CACNNNNGTG	1 cut(s)	1249
Alw21I	GWGCWC	2 cut(s)	416, 895
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	6 cut(s)	59, 613, 1003, 1089, 1571, 1621
AlwNI	CAGNNNCTG	2 cut(s)	310, 1166
Ama87I	CYCGRG	1 cut(s)	69
AoxI	GGCC	2 cut(s)	333, 1162
ApeKI	GCWGC	4 cut(s)	152, 197, 800, 1152
ApoI	RAATTY	2 cut(s)	499, 1582
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
Asp700I	GAANNNNTTC	1 cut(s)	1173
AspS9I	GGNCC	1 cut(s)	1163
AsuHPI	GGTGA	3 cut(s)	505, 610, 871
AvaI	CYCGRG	1 cut(s)	69
BanI	GGYRCC	2 cut(s)	212, 315
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
BauI	CACGAG	1 cut(s)	1488
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	2 cut(s)	416, 895
BbvCI	CCTCAGC	1 cut(s)	1287
BbvI	GCAGC	4 cut(s)	164, 184, 787, 1164
BccI	CCATC	4 cut(s)	521, 743, 1022, 1128
BceAI	ACGGC	4 cut(s)	123, 185, 226, 379
BclI	TGATCA	1 cut(s)	1107
BcoDI	GTCTC	1 cut(s)	734
BfaI	CTAG	4 cut(s)	519, 887, 1407, 1636
BfmI	CTRYAG	1 cut(s)	1598
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	5 cut(s)	84, 153, 198, 801, 1153
BlsI	GCNGC	5 cut(s)	85, 154, 199, 802, 1154
BmcAI	AGTACT	2 cut(s)	942, 1441
BmeT110I	CYCGRG	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	1163
BmiI	GGNNCC	4 cut(s)	214, 317, 458, 1473
BmsI	GCATC	2 cut(s)	1139, 1586
BpiI	GAAGAC	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	1287
BpuEI	CTTGAG	3 cut(s)	430, 721, 1259
BsaHI	GRCGYC	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	734
BsaWI	WCCGGW	2 cut(s)	215, 375
BsaXI	ACNNNNNCTCC	2 cut(s)	1521, 1551
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 1050
Bse1I	ACTGG	2 cut(s)	744, 1630
Bse3DI	GCAATG	1 cut(s)	1446
BseGI	GGATG	2 cut(s)	1154, 1356
BseLI	CCNNNNNNNGG	2 cut(s)	342, 1050
BseMI	GCAATG	1 cut(s)	1446
BseMII	CTCAG	5 cut(s)	302, 305, 596, 1250, 1278
BseNI	ACTGG	2 cut(s)	744, 1630
BseRI	GAGGAG	1 cut(s)	14
BseXI	GCAGC	4 cut(s)	164, 184, 787, 1164
BseYI	CCCAGC	1 cut(s)	982
BshFI	GGCC	2 cut(s)	335, 1164
BshNI	GGYRCC	2 cut(s)	212, 315
BsiHKAI	GWGCWC	2 cut(s)	416, 895
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	216, 376
BslFI	GGGAC	3 cut(s)	901, 999, 1294
BslI	CCNNNNNNNGG	2 cut(s)	342, 1050
BsmAI	GTCTC	1 cut(s)	734
BsmFI	GGGAC	3 cut(s)	901, 999, 1294
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	2 cut(s)	335, 1164
Bso31I	GGTCTC	1 cut(s)	734
BsoBI	CYCGRG	1 cut(s)	69
Bsp1286I	GDGCHC	2 cut(s)	416, 895
BspACI	CCGC	4 cut(s)	54, 83, 184, 828
BspANI	GGCC	2 cut(s)	335, 1164
BspCNI	CTCAG	5 cut(s)	303, 304, 595, 1251, 1279
BspHI	TCATGA	1 cut(s)	1210
BspLI	GGNNCC	4 cut(s)	214, 317, 458, 1473
BspPI	GGATC	6 cut(s)	59, 613, 1003, 1089, 1571, 1621
BspT107I	GGYRCC	2 cut(s)	212, 315
BspTNI	GGTCTC	1 cut(s)	734
BsrBI	CCGCTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	1446
BsrI	ACTGG	2 cut(s)	744, 1630
BssNI	GRCGYC	1 cut(s)	170
BssSI	CACGAG	1 cut(s)	1488
Bst2BI	CACGAG	1 cut(s)	1488
Bst4CI	ACNGT	6 cut(s)	129, 229, 466, 568, 637, 1523
Bst6I	CTCTTC	2 cut(s)	860, 1553
BstACI	GRCGYC	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	691, 819, 1453
BstDEI	CTNAG	7 cut(s)	291, 311, 582, 1247, 1259, 1266, 1287
BstF5I	GGATG	2 cut(s)	1154, 1356
BstMAI	GTCTC	1 cut(s)	734
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 282, 806, 827, 1161, 1170
BstSFI	CTRYAG	1 cut(s)	1598
BstV1I	GCAGC	4 cut(s)	164, 184, 787, 1164
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	3 cut(s)	256, 605, 995
BstXI	CCANNNNNNTGG	2 cut(s)	148, 1251
BstYI	RGATCY	3 cut(s)	256, 605, 995
BsuRI	GGCC	2 cut(s)	335, 1164
BtsCI	GGATG	2 cut(s)	1154, 1356
BtsIMutI	CAGTG	5 cut(s)	299, 471, 590, 751, 1117
Cac8I	GCNNGC	3 cut(s)	691, 819, 1453
CaiI	CAGNNNCTG	2 cut(s)	310, 1166
CciI	TCATGA	1 cut(s)	1210
Cfr13I	GGNCC	1 cut(s)	1163
CseI	GACGC	2 cut(s)	178, 310
Csp6I	GTAC	3 cut(s)	379, 941, 1440
CviAII	CATG	5 cut(s)	250, 968, 1211, 1307, 1378
CviQI	GTAC	3 cut(s)	379, 941, 1440
DdeI	CTNAG	7 cut(s)	291, 311, 582, 1247, 1259, 1266, 1287
DraI	TTTAAA	1 cut(s)	472
DrdI	GACNNNNNNGTC	1 cut(s)	428
DseDI	GACNNNNNNGTC	1 cut(s)	428
Eam1104I	CTCTTC	2 cut(s)	860, 1553
EarI	CTCTTC	2 cut(s)	860, 1553
EciI	GGCGGA	1 cut(s)	817
Eco31I	GGTCTC	1 cut(s)	734
Eco57I	CTGAAG	1 cut(s)	1440
Eco88I	CYCGRG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	1163
EcoT22I	ATGCAT	1 cut(s)	484
FaeI	CATG	5 cut(s)	253, 971, 1214, 1310, 1381
FaqI	GGGAC	3 cut(s)	901, 999, 1294
FatI	CATG	5 cut(s)	249, 967, 1210, 1306, 1377
FauI	CCCGC	1 cut(s)	191
FauNDI	CATATG	1 cut(s)	934
FbaI	TGATCA	1 cut(s)	1107
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	5 cut(s)	84, 153, 198, 801, 1153
FokI	GGATG	2 cut(s)	1161, 1343
Fsp4HI	GCNGC	5 cut(s)	84, 153, 198, 801, 1153
FspBI	CTAG	4 cut(s)	519, 887, 1407, 1636
GluI	GCNGC	5 cut(s)	84, 153, 198, 801, 1153
GsaI	CCCAGC	1 cut(s)	986
HaeIII	GGCC	2 cut(s)	335, 1164
HapII	CCGG	2 cut(s)	216, 376
HgaI	GACGC	2 cut(s)	178, 310
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	5 cut(s)	253, 971, 1214, 1310, 1381
HincII	GTYRAC	3 cut(s)	208, 442, 1500
HindII	GTYRAC	3 cut(s)	208, 442, 1500
HinfI	GANTC	6 cut(s)	307, 593, 971, 1116, 1313, 1326
HpaI	GTTAAC	1 cut(s)	442
HpaII	CCGG	2 cut(s)	216, 376
HphI	GGTGA	3 cut(s)	505, 610, 871
Hpy166II	GTNNAC	7 cut(s)	208, 232, 442, 910, 1009, 1500, 1519
Hpy188I	TCNGA	6 cut(s)	90, 114, 242, 312, 405, 663
Hpy188III	TCNNGA	7 cut(s)	158, 682, 841, 1211, 1238, 1418, 1475
Hpy8I	GTNNAC	7 cut(s)	208, 232, 442, 910, 1009, 1500, 1519
Hpy99I	CGWCG	2 cut(s)	206, 386
HpyAV	CCTTC	6 cut(s)	142, 329, 665, 1184, 1217, 1501
HpyCH4III	ACNGT	6 cut(s)	129, 229, 466, 568, 637, 1523
HpyCH4IV	ACGT	1 cut(s)	1515
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 282, 806, 827, 1161, 1170
HpyF3I	CTNAG	7 cut(s)	291, 311, 582, 1247, 1259, 1266, 1287
HpySE526I	ACGT	1 cut(s)	1515
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	5 cut(s)	253, 971, 1214, 1310, 1381
Ksp22I	TGATCA	1 cut(s)	1107
KspAI	GTTAAC	1 cut(s)	442
LmnI	GCTCC	1 cut(s)	1477
Lsp1109I	GCAGC	4 cut(s)	164, 184, 787, 1164
LweI	GCATC	2 cut(s)	1139, 1586
MaeI	CTAG	4 cut(s)	519, 887, 1407, 1636
MaeII	ACGT	1 cut(s)	1515
MaeIII	GTNAC	5 cut(s)	562, 629, 695, 790, 1483
MbiI	CCGCTC	1 cut(s)	56
MflI	RGATCY	3 cut(s)	256, 605, 995
MhlI	GDGCHC	2 cut(s)	416, 895
MluCI	AATT	8 cut(s)	7, 488, 499, 854, 925, 958, 1102, 1582
Mph1103I	ATGCAT	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	1173
MseI	TTAA	5 cut(s)	6, 48, 399, 441, 471
MslI	CAYNNNNRTG	1 cut(s)	1249
MspA1I	CMGCKG	1 cut(s)	1286
MspI	CCGG	2 cut(s)	216, 376
Mva1269I	GAATGC	1 cut(s)	691
MwoI	GCNNNNNNNGC	6 cut(s)	80, 282, 806, 827, 1161, 1170
NdeI	CATATG	1 cut(s)	934
NlaIII	CATG	5 cut(s)	253, 971, 1214, 1310, 1381
NlaIV	GGNNCC	4 cut(s)	214, 317, 458, 1473
NmuCI	GTSAC	3 cut(s)	562, 629, 1483
NsiI	ATGCAT	1 cut(s)	484
OliI	CACNNNNGTG	1 cut(s)	1249
PaeR7I	CTCGAG	1 cut(s)	69
PagI	TCATGA	1 cut(s)	1210
PcsI	WCGNNNNNNNCGW	3 cut(s)	201, 387, 659
PctI	GAATGC	1 cut(s)	691
PdmI	GAANNNNTTC	1 cut(s)	1173
PfeI	GAWTC	6 cut(s)	307, 593, 971, 1116, 1313, 1326
PflFI	GACNNNGTC	1 cut(s)	635
PkrI	GCNGC	5 cut(s)	85, 154, 199, 802, 1154
PsiI	TTATAA	1 cut(s)	726
PspFI	CCCAGC	1 cut(s)	982
PspN4I	GGNNCC	4 cut(s)	214, 317, 458, 1473
PspPI	GGNCC	1 cut(s)	1163
PspXI	VCTCGAGB	1 cut(s)	69
PstNI	CAGNNNCTG	2 cut(s)	310, 1166
PsuI	RGATCY	3 cut(s)	256, 605, 995
PsyI	GACNNNGTC	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	1286
RsaI	GTAC	3 cut(s)	380, 942, 1441
RsaNI	GTAC	3 cut(s)	379, 941, 1440
RseI	CAYNNNNRTG	1 cut(s)	1249
SaqAI	TTAA	5 cut(s)	6, 48, 399, 441, 471
SatI	GCNGC	5 cut(s)	84, 153, 198, 801, 1153
Sau96I	GGNCC	1 cut(s)	1163
ScaI	AGTACT	2 cut(s)	942, 1441
SduI	GDGCHC	2 cut(s)	416, 895
SfaNI	GCATC	2 cut(s)	1139, 1586
SfcI	CTRYAG	1 cut(s)	1598
Sfr274I	CTCGAG	1 cut(s)	69
SlaI	CTCGAG	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	1249
SmlI	CTYRAG	4 cut(s)	69, 409, 700, 1238
SmoI	CTYRAG	4 cut(s)	69, 409, 700, 1238
Sse9I	AATT	8 cut(s)	7, 488, 499, 854, 925, 958, 1102, 1582
SsiI	CCGC	4 cut(s)	54, 83, 184, 828
SspMI	CTAG	4 cut(s)	519, 887, 1407, 1636
TaaI	ACNGT	6 cut(s)	129, 229, 466, 568, 637, 1523
TaiI	ACGT	1 cut(s)	1518
TaqI	TCGA	5 cut(s)	70, 159, 390, 710, 1365
TasI	AATT	8 cut(s)	7, 488, 499, 854, 925, 958, 1102, 1582
TatI	WGTACW	2 cut(s)	940, 1439
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	6 cut(s)	307, 593, 971, 1116, 1313, 1326
Tru1I	TTAA	5 cut(s)	6, 48, 399, 441, 471
Tru9I	TTAA	5 cut(s)	6, 48, 399, 441, 471
TscAI	CASTG	5 cut(s)	299, 471, 590, 751, 1117
TseFI	GTSAC	3 cut(s)	562, 629, 1483
TseI	GCWGC	4 cut(s)	152, 197, 800, 1152
Tsp45I	GTSAC	3 cut(s)	562, 629, 1483
TspDTI	ATGAA	8 cut(s)	124, 921, 951, 1110, 1199, 1322, 1323, 1366
TspGWI	ACGGA	2 cut(s)	312, 1517
TspRI	CASTG	5 cut(s)	299, 471, 590, 751, 1117
Tth111I	GACNNNGTC	1 cut(s)	635
XapI	RAATTY	2 cut(s)	499, 1582
XhoI	CTCGAG	1 cut(s)	69
XmiI	GTMKAC	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	1173
XspI	CTAG	4 cut(s)	519, 887, 1407, 1636
ZrmI	AGTACT	2 cut(s)	942, 1441
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.