Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001832

Physical Location & Seq

Genomic Coordinates Forward (+)

11583765 .. 11585785

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG136300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAAGGGTTTGCTTTGGTGCCGCAGAGAGGTGGAGTTGAAAGTGTTTATGCATTGGCCCAGTGCTGGAGGACCATCAGCGATAAAGGGTGTAGAGATTGTTTGGAAGAAGCTGGGAAGATTCTCCGGGGATGCTTGCCTGGGAAGCAAGGTTTATAAGCACTATAGGGCCAATACTATTACTGAATCTGTTGATGCCATGTTGAAAGGTGAGTACTCCGAAAGAGAGGCGTCGAATGTACTTCAAATTGGGCTTCTGTGCACGCAAGCTTCTCTTGCACTGAGACCATCCATGTCTGAGGTAGTTCACATGCTGACCAATAATGAATGTAGCATTCCTTCACCGAAACAGCCTCCATTCTTGAATGCCAGCATACTTAATTCGGATTCCTCTAGATCTACATTGAGCTATTTGTCAAAAGAGGGAGGAGAGTCTCTAAAGTCCGCCGATCTAGCCAGCTTGGAATCAAATTGTATTAAAACAATGGAAGCATCTGAACCAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

168

Amino Acids

18.41

Weight (kDa)

8.27

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40380 AT5G40380 AT5G40380
fragaria_vesca	FvH4_4g26070 FvH4_5g05520 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060
malus_domestica	MD14G1177300.v1.1 MD17G1031100.v1.1
prunus_persica	Prupe.3G288600_v2.0.a1 Prupe.5G171200_v2.0.a1
pyrus_communis	pycom14g14810 pycom17g02850
rosa_chinensis	RchiOBHm_Chr2g0089301 RchiOBHm_Chr2g0172611 RchiOBHm_Chr7g0193291
rosa_laevigata	RLG00000004281 RLG00000022120 RLG00000022121 RLG00000022125
rosa_multiflora	Rmu_co8025498.1_g000001 Rmu_sc0017093.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079690 Rroxscaffold_2G00079700 Rroxscaffold_3G00262230
rosa_rugosa	Rorug01G0488900 Rorug02G0246100 Rorug02G0560300 Rorug02G0560400 Rorug07G0008700
rosa_samantha	Rh2AG636700 Rh2AG636900 Rh2BG650100 Rh2BG650300 Rh2CG616800 Rh2CG616900 Rh2DG664300 Rh2DG664400 Rh7BG135300 Rh7CG138300 Rh7DG136300
rosa_wichuraiana	Rw2G052660 Rw2G052670 Rw7G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	18
AciI	CCGC	2 cut(s)	22, 444
AcyI	GRCGYC	1 cut(s)	230
AfaI	GTAC	2 cut(s)	215, 240
AfiI	CCNNNNNNNGG	2 cut(s)	28, 65
AgsI	TTSAA	4 cut(s)	40, 205, 245, 364
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	4 cut(s)	112, 269, 408, 459
AluI	AGCT	4 cut(s)	112, 269, 408, 459
Alw21I	GWGCWC	1 cut(s)	263
Alw26I	GTCTC	2 cut(s)	277, 438
Alw44I	GTGCAC	1 cut(s)	259
AoxI	GGCC	2 cut(s)	56, 168
ApaLI	GTGCAC	1 cut(s)	259
AspS9I	GGNCC	3 cut(s)	57, 71, 168
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	221, 333
AvaII	GGWCC	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	18
BarI	GAAGNNNNNNTAC	2 cut(s)	322, 354
Bbv12I	GWGCWC	1 cut(s)	263
BccI	CCATC	2 cut(s)	82, 295
BciT130I	CCWGG	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	277, 438
BfaI	CTAG	2 cut(s)	393, 452
BfmI	CTRYAG	1 cut(s)	163
BglII	AGATCT	1 cut(s)	395
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
BmcAI	AGTACT	1 cut(s)	215
Bme1390I	CCNGG	2 cut(s)	127, 140
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	3 cut(s)	57, 71, 168
BmiI	GGNNCC	1 cut(s)	20
BmrFI	CCNGG	2 cut(s)	127, 140
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	3 cut(s)	121, 184, 500
BmuI	ACTGGG	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	127
BsaHI	GRCGYC	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	3 cut(s)	126, 139, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 65
Bse1I	ACTGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	3 cut(s)	126, 139, 500
BseGI	GGATG	2 cut(s)	136, 287
BseLI	CCNNNNNNNGG	2 cut(s)	28, 65
BseMII	CTCAG	2 cut(s)	272, 288
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	441
BseSI	GKGCMC	1 cut(s)	263
BseYI	CCCAGC	1 cut(s)	112
BshFI	GGCC	2 cut(s)	58, 170
BshNI	GGYRCC	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	28, 65
BsmAI	GTCTC	2 cut(s)	277, 438
BsmI	GAATGC	2 cut(s)	333, 370
BsnI	GGCC	2 cut(s)	58, 170
Bso31I	GGTCTC	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	395, 448
BspACI	CCGC	2 cut(s)	22, 444
BspANI	GGCC	2 cut(s)	58, 170
BspCNI	CTCAG	2 cut(s)	273, 289
BspLI	GGNNCC	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	18
BspTNI	GGTCTC	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	3 cut(s)	126, 139, 500
BssMI	GATC	2 cut(s)	395, 448
BssNI	GRCGYC	1 cut(s)	230
BssT1I	CCWWGG	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	230
BstC8I	GCNNGC	5 cut(s)	136, 263, 267, 370, 457
BstDEI	CTNAG	2 cut(s)	281, 297
BstF5I	GGATG	2 cut(s)	136, 287
BstKTI	GATC	2 cut(s)	398, 451
BstMAI	GTCTC	2 cut(s)	277, 438
BstMBI	GATC	2 cut(s)	395, 448
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 275, 452
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	2 cut(s)	125, 138
BstSFI	CTRYAG	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	58, 170
BtsCI	GGATG	2 cut(s)	136, 287
BtsIMutI	CAGTG	2 cut(s)	67, 278
Cac8I	GCNNGC	5 cut(s)	136, 263, 267, 370, 457
Cfr13I	GGNCC	3 cut(s)	57, 71, 168
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	214, 239
CviAII	CATG	3 cut(s)	199, 292, 310
CviJI	RGCY	9 cut(s)	58, 112, 170, 253, 269, 352, 408, 455, 459
CviKI_1	RGCY	9 cut(s)	58, 112, 170, 253, 269, 352, 408, 455, 459
CviQI	GTAC	2 cut(s)	214, 239
DdeI	CTNAG	2 cut(s)	281, 297
DpnI	GATC	2 cut(s)	397, 450
DpnII	GATC	2 cut(s)	395, 448
EciI	GGCGGA	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	500
Eco31I	GGTCTC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	500
EcoT22I	ATGCAT	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	3 cut(s)	202, 295, 313
FaiI	YATR	7 cut(s)	50, 156, 165, 200, 293, 311, 374
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	3 cut(s)	198, 291, 309
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	2 cut(s)	143, 274
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	2 cut(s)	393, 452
GluI	GCNGC	1 cut(s)	22
GsaI	CCCAGC	1 cut(s)	116
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	58, 170
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	202, 295, 313
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	5 cut(s)	120, 185, 386, 431, 464
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	2 cut(s)	221, 333
Hpy166II	GTNNAC	2 cut(s)	261, 307
Hpy188I	TCNGA	4 cut(s)	220, 298, 385, 496
Hpy188III	TCNNGA	2 cut(s)	361, 393
Hpy8I	GTNNAC	2 cut(s)	261, 307
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	1 cut(s)	348
HpyCH4V	TGCA	3 cut(s)	52, 261, 278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 275, 452
HpyF3I	CTNAG	2 cut(s)	281, 297
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	3 cut(s)	202, 295, 313
Kzo9I	GATC	2 cut(s)	395, 448
LpnPI	CCDG	8 cut(s)	51, 73, 98, 125, 139, 152, 382, 469
LweI	GCATC	3 cut(s)	121, 184, 500
MaeI	CTAG	2 cut(s)	393, 452
MalI	GATC	2 cut(s)	397, 450
MboI	GATC	2 cut(s)	395, 448
MboII	GAAGA	2 cut(s)	118, 129
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	3 cut(s)	246, 379, 469
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	8 cut(s)	22, 62, 220, 292, 363, 400, 415, 419
Mph1103I	ATGCAT	1 cut(s)	54
MseI	TTAA	2 cut(s)	378, 477
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	127, 140
Mva1269I	GAATGC	2 cut(s)	333, 370
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	3 cut(s)	144, 275, 452
NciI	CCSGG	1 cut(s)	127
NdeII	GATC	2 cut(s)	395, 448
NlaIII	CATG	3 cut(s)	202, 295, 313
NlaIV	GGNNCC	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	54
NspI	RCATGY	1 cut(s)	313
PctI	GAATGC	2 cut(s)	333, 370
PfeI	GAWTC	4 cut(s)	120, 185, 386, 464
PkrI	GCNGC	1 cut(s)	23
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	20
PspPI	GGNCC	3 cut(s)	57, 71, 168
PsuI	RGATCY	1 cut(s)	395
RsaI	GTAC	2 cut(s)	215, 240
RsaNI	GTAC	2 cut(s)	214, 239
SaqAI	TTAA	2 cut(s)	378, 477
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	2 cut(s)	395, 448
Sau96I	GGNCC	3 cut(s)	57, 71, 168
ScaI	AGTACT	1 cut(s)	215
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	127, 140
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	9 cut(s)	33, 114, 153, 211, 271, 303, 410, 461, 506
SfaNI	GCATC	3 cut(s)	121, 184, 500
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	71
Sse9I	AATT	3 cut(s)	246, 379, 469
SsiI	CCGC	2 cut(s)	22, 444
SspMI	CTAG	2 cut(s)	393, 452
StyD4I	CCNGG	2 cut(s)	125, 138
StyI	CCWWGG	1 cut(s)	500
TaqI	TCGA	1 cut(s)	233
TasI	AATT	3 cut(s)	246, 379, 469
TatI	WGTACW	2 cut(s)	213, 238
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	4 cut(s)	120, 185, 386, 464
Tru1I	TTAA	2 cut(s)	378, 477
Tru9I	TTAA	2 cut(s)	378, 477
TscAI	CASTG	2 cut(s)	67, 285
TspDTI	ATGAA	2 cut(s)	17, 339
TspRI	CASTG	2 cut(s)	67, 285
VneI	GTGCAC	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	71
XbaI	TCTAGA	1 cut(s)	392
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	2 cut(s)	393, 452
ZrmI	AGTACT	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.