Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001832

Physical Location & Seq

Genomic Coordinates Forward (+)

11266739 .. 11268817

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG138300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGGAGGGGTTTAACCTCAAGGTAAGGGATGTGATTGGTAACTTGACGAAGAAGGCTGAGGGTTTGCTTTGGTGCGGCAGAGAGGTGGAGTTGAAAGTGTTTATGCATTGGCCCAGTGCTGGAGGACCATCAGCGATAAAGGGTGTAGAGATTGTTTGGAAGAAGCTGGGAAGATTCTCGGGGGATGCTTGCCTGGGAAGCAAGGTAGGGCTATGCTATGCTGGCAGGGTGTTATATGAGGTTTATAAGCACTATAGGGCCAATACTATTACTGAATCTGTTGATGCCATGTTGAAAGGTGAGTACTCCGAAAGAGAGGCGTCGAATGTACTTCAAATTGGGCTTCTGTGCACGCAAGCTTCTCTTGCACTGAGACCATCCATGTCTGAGGTAGTTCACATGCTGACCAATAAAGAATGTAGCATTCCTTCACCGAAACAGCCTCCATTCTTGAATGCCAGCATACTTAATTCGGATTCCTCTAGATCTACATTGAGCTATTTGTCAAAAGAGGGAGGAGAGTCTCTAAAGTCCGCCGATCTAGCCAGCTTGGAATCAAATTGTCTTCAAACAATGGAAGCATCTGAACCAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

199

Amino Acids

21.76

Weight (kDa)

8.17

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40380 AT5G40380 AT5G40380
fragaria_vesca	FvH4_4g26070 FvH4_5g05520 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060
malus_domestica	MD14G1177300.v1.1 MD17G1031100.v1.1
prunus_persica	Prupe.3G288600_v2.0.a1 Prupe.5G171200_v2.0.a1
pyrus_communis	pycom14g14810 pycom17g02850
rosa_chinensis	RchiOBHm_Chr2g0089301 RchiOBHm_Chr2g0172611 RchiOBHm_Chr7g0193291
rosa_laevigata	RLG00000004281 RLG00000022120 RLG00000022121 RLG00000022125
rosa_multiflora	Rmu_co8025498.1_g000001 Rmu_sc0017093.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079690 Rroxscaffold_2G00079700 Rroxscaffold_3G00262230
rosa_rugosa	Rorug01G0488900 Rorug02G0246100 Rorug02G0560300 Rorug02G0560400 Rorug07G0008700
rosa_samantha	Rh2AG636700 Rh2AG636900 Rh2BG650100 Rh2BG650300 Rh2CG616800 Rh2CG616900 Rh2DG664300 Rh2DG664400 Rh7BG135300 Rh7CG138300 Rh7DG136300
rosa_wichuraiana	Rw2G052660 Rw2G052670 Rw7G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AciI	CCGC	2 cut(s)	78, 537
AcyI	GRCGYC	1 cut(s)	323
AfaI	GTAC	2 cut(s)	308, 333
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	5 cut(s)	97, 298, 338, 457, 572
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	4 cut(s)	169, 362, 501, 552
AluI	AGCT	4 cut(s)	169, 362, 501, 552
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	2 cut(s)	370, 531
Alw44I	GTGCAC	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	2 cut(s)	113, 261
ApaLI	GTGCAC	1 cut(s)	352
AspS9I	GGNCC	3 cut(s)	114, 128, 261
AsuHPI	GGTGA	2 cut(s)	314, 426
AvaI	CYCGRG	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	356
BarI	GAAGNNNNNNTAC	2 cut(s)	415, 447
BbsI	GAAGAC	1 cut(s)	560
Bbv12I	GWGCWC	1 cut(s)	356
BbvCI	CCTCAGC	1 cut(s)	60
BccI	CCATC	2 cut(s)	139, 388
BciT130I	CCWGG	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	370, 531
BfaI	CTAG	2 cut(s)	486, 545
BfmI	CTRYAG	1 cut(s)	256
BglII	AGATCT	1 cut(s)	488
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
BmcAI	AGTACT	1 cut(s)	308
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	128
BmeT110I	CYCGRG	1 cut(s)	181
BmgT120I	GGNCC	3 cut(s)	114, 128, 261
BmrFI	CCNGG	1 cut(s)	197
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	3 cut(s)	178, 277, 593
BmuI	ACTGGG	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	560
BpmI	CTGGAG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	5
BsaHI	GRCGYC	1 cut(s)	323
BsaI	GGTCTC	1 cut(s)	370
BsaJI	CCNNGG	2 cut(s)	196, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	196, 593
BseGI	GGATG	3 cut(s)	37, 193, 380
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMII	CTCAG	3 cut(s)	51, 365, 381
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	534
BseSI	GKGCMC	1 cut(s)	356
BseYI	CCCAGC	1 cut(s)	169
BshFI	GGCC	2 cut(s)	115, 263
BsiHKAI	GWGCWC	1 cut(s)	356
BsiHKCI	CYCGRG	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	2 cut(s)	370, 531
BsmI	GAATGC	2 cut(s)	426, 463
BsnI	GGCC	2 cut(s)	115, 263
Bso31I	GGTCTC	1 cut(s)	370
BsoBI	CYCGRG	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp143I	GATC	2 cut(s)	488, 541
BspACI	CCGC	2 cut(s)	78, 537
BspANI	GGCC	2 cut(s)	115, 263
BspCNI	CTCAG	3 cut(s)	52, 366, 382
BspTNI	GGTCTC	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	196, 593
BssMI	GATC	2 cut(s)	488, 541
BssNI	GRCGYC	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	593
Bst2UI	CCWGG	1 cut(s)	197
BstACI	GRCGYC	1 cut(s)	323
BstC8I	GCNNGC	6 cut(s)	193, 226, 356, 360, 463, 550
BstDEI	CTNAG	3 cut(s)	60, 374, 390
BstF5I	GGATG	3 cut(s)	37, 193, 380
BstKTI	GATC	2 cut(s)	491, 544
BstMAI	GTCTC	2 cut(s)	370, 531
BstMBI	GATC	2 cut(s)	488, 541
BstMWI	GCNNNNNNNGC	4 cut(s)	201, 225, 368, 545
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	256
BstSLI	GKGCMC	1 cut(s)	356
BstV2I	GAAGAC	1 cut(s)	560
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BsuRI	GGCC	2 cut(s)	115, 263
BtsCI	GGATG	3 cut(s)	37, 193, 380
BtsIMutI	CAGTG	2 cut(s)	124, 371
Cac8I	GCNNGC	6 cut(s)	193, 226, 356, 360, 463, 550
Cfr13I	GGNCC	3 cut(s)	114, 128, 261
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	307, 332
CviAII	CATG	3 cut(s)	292, 385, 403
CviQI	GTAC	2 cut(s)	307, 332
DdeI	CTNAG	3 cut(s)	60, 374, 390
DpnI	GATC	2 cut(s)	490, 543
DpnII	GATC	2 cut(s)	488, 541
EciI	GGCGGA	1 cut(s)	526
Eco130I	CCWWGG	1 cut(s)	593
Eco31I	GGTCTC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	593
EcoT22I	ATGCAT	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	593
FaeI	CATG	3 cut(s)	295, 388, 406
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FatI	CATG	3 cut(s)	291, 384, 402
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	3 cut(s)	44, 200, 367
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	2 cut(s)	486, 545
GluI	GCNGC	1 cut(s)	79
GsaI	CCCAGC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	115, 263
HgaI	GACGC	1 cut(s)	312
Hin1I	GRCGYC	1 cut(s)	323
Hin1II	CATG	3 cut(s)	295, 388, 406
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	5 cut(s)	177, 278, 479, 524, 557
HphI	GGTGA	2 cut(s)	314, 426
Hpy166II	GTNNAC	2 cut(s)	354, 400
Hpy188I	TCNGA	4 cut(s)	313, 391, 478, 589
Hpy188III	TCNNGA	2 cut(s)	454, 486
Hpy8I	GTNNAC	2 cut(s)	354, 400
Hpy99I	CGWCG	1 cut(s)	328
HpyAV	CCTTC	2 cut(s)	49, 441
HpyCH4V	TGCA	3 cut(s)	109, 354, 371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	201, 225, 368, 545
HpyF3I	CTNAG	3 cut(s)	60, 374, 390
Hsp92I	GRCGYC	1 cut(s)	323
Hsp92II	CATG	3 cut(s)	295, 388, 406
Kzo9I	GATC	2 cut(s)	488, 541
LpnPI	CCDG	9 cut(s)	108, 130, 155, 182, 209, 210, 214, 475, 562
LweI	GCATC	3 cut(s)	178, 277, 593
MaeI	CTAG	2 cut(s)	486, 545
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	490, 543
MboI	GATC	2 cut(s)	488, 541
MboII	GAAGA	4 cut(s)	64, 175, 186, 560
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	3 cut(s)	339, 472, 562
MlyI	GAGTC	1 cut(s)	533
Mph1103I	ATGCAT	1 cut(s)	111
MseI	TTAA	2 cut(s)	15, 471
MspR9I	CCNGG	1 cut(s)	197
Mva1269I	GAATGC	2 cut(s)	426, 463
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	4 cut(s)	201, 225, 368, 545
NdeII	GATC	2 cut(s)	488, 541
NlaIII	CATG	3 cut(s)	295, 388, 406
NsiI	ATGCAT	1 cut(s)	111
NspI	RCATGY	1 cut(s)	406
PctI	GAATGC	2 cut(s)	426, 463
PfeI	GAWTC	4 cut(s)	177, 278, 479, 557
PkrI	GCNGC	1 cut(s)	80
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PsiI	TTATAA	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	195
PspPI	GGNCC	3 cut(s)	114, 128, 261
PsuI	RGATCY	1 cut(s)	488
RsaI	GTAC	2 cut(s)	308, 333
RsaNI	GTAC	2 cut(s)	307, 332
SaqAI	TTAA	2 cut(s)	15, 471
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	2 cut(s)	488, 541
Sau96I	GGNCC	3 cut(s)	114, 128, 261
ScaI	AGTACT	1 cut(s)	308
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	356
SfaNI	GCATC	3 cut(s)	178, 277, 593
SfcI	CTRYAG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	339, 472, 562
SsiI	CCGC	2 cut(s)	78, 537
SspMI	CTAG	2 cut(s)	486, 545
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	593
TaqI	TCGA	1 cut(s)	326
TasI	AATT	3 cut(s)	339, 472, 562
TatI	WGTACW	2 cut(s)	306, 331
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	4 cut(s)	177, 278, 479, 557
Tru1I	TTAA	2 cut(s)	15, 471
Tru9I	TTAA	2 cut(s)	15, 471
TscAI	CASTG	2 cut(s)	124, 378
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	124, 378
VneI	GTGCAC	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	128
XbaI	TCTAGA	1 cut(s)	485
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	2 cut(s)	486, 545
ZrmI	AGTACT	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.