Rw2G052660

cysteine-rich receptor-like protein kinase 43

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
80575857 .. 80585098
9242 bp
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UTR
Exon/CDS
Intron
Rw2G052660.1

Sequence Viewer

Length: 1584 bp
ATGTTACCTTCAACAAGGTGGTGGCTGAGATGGATAAAAAAAATGCTCCGTAACAACTTTGGGACTGCGGAAGAGGGTGAGCCTCCTGACCGGCTTTATATGTTGGCTCAGTGCATGACAGATCTTTCGGTCAATGAATGTAAGACGTGCTATGATTTGAGTAATCATGCCTTGGCTGGTTGCCTTCCTAACACAGGAGGTCGTGCTTTATTTGATGGTTGCTTTATAAGGGCTGAAAATTACAGCTTCTTTGATGAGACATTCCAAGATAAAGATTTCAAGCATTGCAGCGACAATGCCGAGTTCAATCAGAAATTTAACCAAACACCAGAGAAAGTGTTCAAAAAACTTGTGAAGTTGGCTGAGCATAATGATGGATTTGCAGTCGCCAAAGATAGCTCAAATGGTTTTAATGGTTTTACAGTGTTTGCTATGGCTAATTGCTGGAGGAGTCTAGACAGTAGTAAGTGTTCTTCATGTGTAGAAAATGCAGCCAACCGTGCAATTTCATGCTTGCCATCGTCTGAGGGTCGTGTGCTCAATTCTGGCTGCGTTTTACGTTACTCTGATTATTACTTTGGCAATAACCCTCGAGCCCTCGAAATCAAAGAATCTGCACTAAAGACCGCCTCATATATTATTCTTGCGTTGGCCTTGTTCGCATTGATTATTATGCTCGGAATTTGTGCGGGTAAATCTAGTTATAGACGAATACGTCACCAGAGAAAATCAAATGCTAAGGGAAAGGAGAGGGAGATGGCAGTTTTTAACCAAAGCTCAGAGTTCCAGAATTTTAAGTACTCAACACTAGTGAAAGCAACCGAGTGCTTCGATGAAGCCCATAAGCTTGGTCAAGGAGCATATGGTGAAGTATTTAAGGGCACTTTACATGATGGTAGAGAAATTGCTATAAAACGTTTGTTCATAACCGGAAAAACCCAAACTCAAGAGGTGTACAATGAAATTCATATCATTAGAAAAGCTCAACATAAGAACTTGGTTCGCTTCCTTGGCTGCTGCTTCACCAACATCAGCTGTTTCCTTATCTACGAATTCCTAGCAAACAGAAGCCTCGACCTTATATTATTTGCGAAGAAGGGAGTGTTAGACTGGAAGAAACGGCTAGGAATAATTGTAGGAACAGCAGAAGGTTTGGAGTACCTCCAAAAAGACTCTAGCAACATCTTATTGGACCTGAAACACAGACCAAAAATTGCAAATTTTGGTCTTGCAAGGTTTTATTCATCCAACACAAGCTTAAGTAGCACTCTCATTGCTGGCACAATTTCTTATAACAACTCAACGATCGTGTCCTATCCTCTGCAAACTTTAGTCACTGATGTGTGGGACCATGTCCAAAATAATACGATTTCTCGAATTATCGATAAGAGTATGAAGATTGAAGACATTGAAGAAATTAAAAGAGTTGTTCAGGTGGGTCTGTTGTGCACTCAAGAATTACCAGAGTTACGTCCTACCATGACATCAGTAATTCGAATGCTTATACGAAGAGACTTGGCATTGCCAGAGCCATCAAAGCCACCTTTCCTTGATATTGTATATATGAAACATCATCATCATTAG

Protein Analysis

527

Amino Acids

59.88

Weight (kDa)

8.92

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 18 - 81 6.6e-10 Salt stress response/antifungal
Stress-antifung PF01657 96 - 191 5.6e-12 Salt stress response/antifungal
Pkinase PF00069 278 - 449 9.1e-22 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 281 - 449 1.2e-23 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 227, 1293
AasI GACNNNNNNGTC 1 cut(s) 714
AciI CCGC 3 cut(s) 68, 627, 689
AclI AACGTT 1 cut(s) 916
AcsI RAATTY 6 cut(s) 314, 681, 790, 963, 1052, 1219
AfaI GTAC 3 cut(s) 800, 956, 1160
AfiI CCNNNNNNNGG 1 cut(s) 194
AflII CTTAAG 1 cut(s) 1258
AgsI TTSAA 6 cut(s) 12, 280, 307, 343, 1403, 1412
AhlI ACTAGT 1 cut(s) 808
AjiI CACGTC 1 cut(s) 147
AleI CACNNNNGTG 1 cut(s) 1340
AluBI AGCT 7 cut(s) 246, 399, 777, 847, 983, 1035, 1257
AluI AGCT 7 cut(s) 246, 399, 777, 847, 983, 1035, 1257
Alw21I GWGCWC 2 cut(s) 540, 1451
Alw26I GTCTC 2 cut(s) 251, 1506
Alw44I GTGCAC 1 cut(s) 1447
Ama87I CYCGRG 1 cut(s) 591
AoxI GGCC 1 cut(s) 651
ApaLI GTGCAC 1 cut(s) 1447
ApeKI GCWGC 5 cut(s) 288, 491, 549, 1014, 1017
ApoI RAATTY 6 cut(s) 314, 681, 790, 963, 1052, 1219
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
Asp700I GAANNNNTTC 1 cut(s) 338
AspS9I GGNCC 2 cut(s) 1192, 1348
AsuHPI GGTGA 4 cut(s) 89, 710, 878, 1015
AsuII TTCGAA 1 cut(s) 1495
AvaI CYCGRG 1 cut(s) 591
AvaII GGWCC 2 cut(s) 1192, 1348
BaeGI GKGCMC 2 cut(s) 884, 1451
BanII GRGCYC 1 cut(s) 598
BarI GAAGNNNNNNTAC 2 cut(s) 457, 489
BbsI GAAGAC 1 cut(s) 1410
Bbv12I GWGCWC 2 cut(s) 540, 1451
BbvI GCAGC 5 cut(s) 300, 503, 536, 1001, 1004
BccI CCATC 7 cut(s) 24, 209, 368, 526, 751, 887, 1540
BceAI ACGGC 1 cut(s) 1136
BcoDI GTCTC 2 cut(s) 251, 1506
BcuI ACTAGT 1 cut(s) 808
BfaI CTAG 6 cut(s) 455, 699, 809, 1058, 1124, 1176
BfrI CTTAAG 1 cut(s) 1258
BglII AGATCT 1 cut(s) 121
BisI GCNGC 5 cut(s) 289, 492, 550, 1015, 1018
BlpI GCTNAGC 1 cut(s) 363
BlsI GCNGC 5 cut(s) 290, 493, 551, 1016, 1019
BmcAI AGTACT 1 cut(s) 800
Bme18I GGWCC 2 cut(s) 1192, 1348
BmeT110I CYCGRG 1 cut(s) 591
BmgBI CACGTC 1 cut(s) 147
BmgT120I GGNCC 2 cut(s) 1192, 1348
BmiI GGNNCC 1 cut(s) 1349
BpiI GAAGAC 1 cut(s) 1410
BpmI CTGGAG 1 cut(s) 466
Bpu10I CCTNAGC 1 cut(s) 738
Bpu1102I GCTNAGC 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 1495
BpuEI CTTGAG 2 cut(s) 930, 1437
Bsa29I ATCGAT 1 cut(s) 1383
BsaJI CCNNGG 2 cut(s) 171, 1009
BsaWI WCCGGW 1 cut(s) 929
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 1115
Bse3DI GCAATG 3 cut(s) 283, 1272, 1520
BseCI ATCGAT 1 cut(s) 1383
BseDI CCNNGG 2 cut(s) 171, 1009
BseGI GGATG 1 cut(s) 1244
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 3 cut(s) 283, 1272, 1520
BseMII CTCAG 5 cut(s) 17, 122, 354, 516, 792
BseNI ACTGG 1 cut(s) 1115
BseRI GAGGAG 1 cut(s) 463
BseSI GKGCMC 2 cut(s) 884, 1451
BseXI GCAGC 5 cut(s) 300, 503, 536, 1001, 1004
BsgI GTGCAG 1 cut(s) 600
Bsh1285I CGRYCG 1 cut(s) 1308
BshFI GGCC 1 cut(s) 653
BshVI ATCGAT 1 cut(s) 1383
BsiEI CGRYCG 1 cut(s) 1308
BsiHKAI GWGCWC 2 cut(s) 540, 1451
BsiHKCI CYCGRG 1 cut(s) 591
BsiSI CCGG 2 cut(s) 91, 930
BslFI GGGAC 2 cut(s) 76, 1361
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 2 cut(s) 251, 1506
BsmFI GGGAC 2 cut(s) 76, 1361
BsmI GAATGC 1 cut(s) 1503
BsnI GGCC 1 cut(s) 653
BsoBI CYCGRG 1 cut(s) 591
Bsp119I TTCGAA 1 cut(s) 1495
Bsp1286I GDGCHC 4 cut(s) 540, 598, 884, 1451
Bsp1407I TGTACA 1 cut(s) 954
Bsp143I GATC 2 cut(s) 121, 1305
Bsp1720I GCTNAGC 1 cut(s) 363
BspACI CCGC 3 cut(s) 68, 627, 689
BspANI GGCC 1 cut(s) 653
BspCNI CTCAG 5 cut(s) 18, 121, 355, 517, 791
BspDI ATCGAT 1 cut(s) 1383
BspLI GGNNCC 1 cut(s) 1349
BspT104I TTCGAA 1 cut(s) 1495
BspTI CTTAAG 1 cut(s) 1258
BsrDI GCAATG 3 cut(s) 283, 1272, 1520
BsrFI RCCGGY 1 cut(s) 90
BsrGI TGTACA 1 cut(s) 954
BsrI ACTGG 1 cut(s) 1115
BssAI RCCGGY 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 171, 1009
BssMI GATC 2 cut(s) 121, 1305
BssT1I CCWWGG 2 cut(s) 171, 1009
Bst4CI ACNGT 3 cut(s) 424, 461, 500
Bst6I CTCTTC 2 cut(s) 66, 1504
BstAFI CTTAAG 1 cut(s) 1258
BstAUI TGTACA 1 cut(s) 954
BstBI TTCGAA 1 cut(s) 1495
BstC8I GCNNGC 2 cut(s) 515, 1279
BstDEI CTNAG 6 cut(s) 26, 108, 363, 525, 738, 778
BstENI CCTNNNNNAGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 1244
BstKTI GATC 2 cut(s) 124, 1308
BstMAI GTCTC 2 cut(s) 251, 1506
BstMBI GATC 2 cut(s) 121, 1305
BstMCI CGRYCG 1 cut(s) 1308
BstMWI GCNNNNNNNGC 5 cut(s) 500, 659, 1011, 1263, 1537
BstSLI GKGCMC 2 cut(s) 884, 1451
BstV1I GCAGC 5 cut(s) 300, 503, 536, 1001, 1004
BstV2I GAAGAC 1 cut(s) 1410
BstX2I RGATCY 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 848
BstYI RGATCY 1 cut(s) 121
Bsu15I ATCGAT 1 cut(s) 1383
BsuRI GGCC 1 cut(s) 653
BsuTUI ATCGAT 1 cut(s) 1383
BtrI CACGTC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 1244
BtsIMutI CAGTG 3 cut(s) 116, 429, 1335
Cac8I GCNNGC 2 cut(s) 515, 1279
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 1192, 1348
ClaI ATCGAT 1 cut(s) 1383
Csp6I GTAC 3 cut(s) 799, 955, 1159
CviAII CATG 7 cut(s) 115, 167, 477, 510, 890, 1352, 1480
CviQI GTAC 3 cut(s) 799, 955, 1159
DdeI CTNAG 6 cut(s) 26, 108, 363, 525, 738, 778
DpnI GATC 2 cut(s) 123, 1307
DpnII GATC 2 cut(s) 121, 1305
DrdI GACNNNNNNGTC 1 cut(s) 714
DseDI GACNNNNNNGTC 1 cut(s) 714
Eam1104I CTCTTC 2 cut(s) 66, 1504
EarI CTCTTC 2 cut(s) 66, 1504
Eco130I CCWWGG 2 cut(s) 171, 1009
Eco24I GRGCYC 1 cut(s) 598
Eco47I GGWCC 2 cut(s) 1192, 1348
Eco88I CYCGRG 1 cut(s) 591
EcoNI CCTNNNNNAGG 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 1052
EcoT14I CCWWGG 2 cut(s) 171, 1009
EcoT38I GRGCYC 1 cut(s) 598
ErhI CCWWGG 2 cut(s) 171, 1009
FaeI CATG 7 cut(s) 118, 170, 480, 513, 893, 1355, 1483
FaqI GGGAC 2 cut(s) 76, 1361
FatI CATG 7 cut(s) 114, 166, 476, 509, 889, 1351, 1479
FauI CCCGC 1 cut(s) 682
FauNDI CATATG 1 cut(s) 862
Fnu4HI GCNGC 5 cut(s) 289, 492, 550, 1015, 1018
FokI GGATG 1 cut(s) 1231
FriOI GRGCYC 1 cut(s) 598
Fsp4HI GCNGC 5 cut(s) 289, 492, 550, 1015, 1018
FspBI CTAG 6 cut(s) 455, 699, 809, 1058, 1124, 1176
GluI GCNGC 5 cut(s) 289, 492, 550, 1015, 1018
GsuI CTGGAG 1 cut(s) 466
HaeIII GGCC 1 cut(s) 653
HapII CCGG 2 cut(s) 91, 930
Hin1II CATG 7 cut(s) 118, 170, 480, 513, 893, 1355, 1483
HindIII AAGCTT 2 cut(s) 845, 1255
HinfI GANTC 3 cut(s) 451, 611, 1172
HpaII CCGG 2 cut(s) 91, 930
HphI GGTGA 4 cut(s) 89, 710, 878, 1015
Hpy166II GTNNAC 2 cut(s) 955, 1449
Hpy188I TCNGA 5 cut(s) 312, 526, 568, 680, 781
Hpy188III TCNNGA 6 cut(s) 86, 455, 787, 947, 1374, 1454
Hpy8I GTNNAC 2 cut(s) 955, 1449
HpyAV CCTTC 4 cut(s) 18, 194, 1090, 1142
HpyCH4III ACNGT 3 cut(s) 424, 461, 500
HpyCH4IV ACGT 5 cut(s) 146, 559, 715, 916, 1471
HpyF10VI GCNNNNNNNGC 5 cut(s) 500, 659, 1011, 1263, 1537
HpyF3I CTNAG 6 cut(s) 26, 108, 363, 525, 738, 778
HpySE526I ACGT 5 cut(s) 146, 559, 715, 916, 1471
Hsp92II CATG 7 cut(s) 118, 170, 480, 513, 893, 1355, 1483
Kzo9I GATC 2 cut(s) 121, 1305
LmnI GCTCC 2 cut(s) 51, 857
Lsp1109I GCAGC 5 cut(s) 300, 503, 536, 1001, 1004
MaeI CTAG 6 cut(s) 455, 699, 809, 1058, 1124, 1176
MaeII ACGT 5 cut(s) 146, 559, 715, 916, 1471
MaeIII GTNAC 6 cut(s) 3, 50, 560, 716, 1333, 1467
MalI GATC 2 cut(s) 123, 1307
MboI GATC 2 cut(s) 121, 1305
MboII GAAGA 8 cut(s) 83, 465, 1105, 1126, 1408, 1415, 1424, 1521
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 4 cut(s) 540, 598, 884, 1451
MlyI GAGTC 2 cut(s) 460, 1166
MmeI TCCRAC 1 cut(s) 1272
MroXI GAANNNNTTC 1 cut(s) 338
MseI TTAA 7 cut(s) 318, 411, 768, 795, 876, 1259, 1419
MslI CAYNNNNRTG 2 cut(s) 372, 1340
MspA1I CMGCKG 1 cut(s) 1035
MspCI CTTAAG 1 cut(s) 1258
MspI CCGG 2 cut(s) 91, 930
Mva1269I GAATGC 1 cut(s) 1503
MwoI GCNNNNNNNGC 5 cut(s) 500, 659, 1011, 1263, 1537
NdeI CATATG 1 cut(s) 862
NdeII GATC 2 cut(s) 121, 1305
NlaIII CATG 7 cut(s) 118, 170, 480, 513, 893, 1355, 1483
NlaIV GGNNCC 1 cut(s) 1349
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 2 cut(s) 716, 1333
NspV TTCGAA 1 cut(s) 1495
OliI CACNNNNGTG 1 cut(s) 1340
PaeR7I CTCGAG 1 cut(s) 591
PctI GAATGC 1 cut(s) 1503
PdmI GAANNNNTTC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 611
PflFI GACNNNGTC 1 cut(s) 1352
PkrI GCNGC 5 cut(s) 290, 493, 551, 1016, 1019
Ple19I CGATCG 1 cut(s) 1308
PleI GAGTC 2 cut(s) 459, 1166
PpsI GAGTC 2 cut(s) 459, 1166
PsiI TTATAA 2 cut(s) 227, 1293
Psp1406I AACGTT 1 cut(s) 916
PspN4I GGNNCC 1 cut(s) 1349
PspPI GGNCC 2 cut(s) 1192, 1348
PspXI VCTCGAGB 1 cut(s) 591
PsrI GAACNNNNNNTAC 2 cut(s) 454, 486
PsuI RGATCY 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 1352
PvuI CGATCG 1 cut(s) 1308
PvuII CAGCTG 1 cut(s) 1035
RsaI GTAC 3 cut(s) 800, 956, 1160
RsaNI GTAC 3 cut(s) 799, 955, 1159
RseI CAYNNNNRTG 2 cut(s) 372, 1340
SaqAI TTAA 7 cut(s) 318, 411, 768, 795, 876, 1259, 1419
SatI GCNGC 5 cut(s) 289, 492, 550, 1015, 1018
Sau3AI GATC 2 cut(s) 121, 1305
Sau96I GGNCC 2 cut(s) 1192, 1348
ScaI AGTACT 1 cut(s) 800
SchI GAGTC 2 cut(s) 460, 1166
SduI GDGCHC 4 cut(s) 540, 598, 884, 1451
Sfr274I CTCGAG 1 cut(s) 591
SfuI TTCGAA 1 cut(s) 1495
SinI GGWCC 2 cut(s) 1192, 1348
SlaI CTCGAG 1 cut(s) 591
SmiMI CAYNNNNRTG 2 cut(s) 372, 1340
SmlI CTYRAG 4 cut(s) 591, 945, 1258, 1452
SmoI CTYRAG 4 cut(s) 591, 945, 1258, 1452
SpeI ACTAGT 1 cut(s) 808
SsiI CCGC 3 cut(s) 68, 627, 689
SspMI CTAG 6 cut(s) 455, 699, 809, 1058, 1124, 1176
StyI CCWWGG 2 cut(s) 171, 1009
TaaI ACNGT 3 cut(s) 424, 461, 500
TaiI ACGT 5 cut(s) 149, 562, 718, 919, 1474
TaqI TCGA 7 cut(s) 592, 600, 831, 1074, 1375, 1383, 1495
TaqII GACCGA 1 cut(s) 118
TatI WGTACW 2 cut(s) 798, 954
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 7 cut(s) 318, 411, 768, 795, 876, 1259, 1419
Tru9I TTAA 7 cut(s) 318, 411, 768, 795, 876, 1259, 1419
TscAI CASTG 3 cut(s) 116, 429, 1342
TseFI GTSAC 2 cut(s) 716, 1333
TseI GCWGC 5 cut(s) 288, 491, 549, 1014, 1017
Tsp45I GTSAC 2 cut(s) 716, 1333
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 3 cut(s) 116, 429, 1342
Tth111I GACNNNGTC 1 cut(s) 1352
Vha464I CTTAAG 1 cut(s) 1258
VneI GTGCAC 1 cut(s) 1447
VpaK11BI GGWCC 2 cut(s) 1192, 1348
XagI CCTNNNNNAGG 1 cut(s) 192
XapI RAATTY 6 cut(s) 314, 681, 790, 963, 1052, 1219
XbaI TCTAGA 1 cut(s) 454
XhoI CTCGAG 1 cut(s) 591
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 6 cut(s) 455, 699, 809, 1058, 1124, 1176
ZrmI AGTACT 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.