Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001832

Physical Location & Seq

Genomic Coordinates Forward (+)

88993516 .. 88994411

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG664400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGAGTTTATCAGAGCTCATCACCAAACACCACTGGGGCACCCATTTCTTTAACTCCACGACCCCCATGTACGGCCTAGCGGAATGCTACAACGACCTGTCGCACACTGATTGTCTTCTCTGCTACGCCGCCAGCCGCACCGAGATCCCCCGCTGCCTCCCCTCCCTCTCCGCCCGCATCTTTCTCGACGGCTGCTTCCTCCGCTACGACAACTACAGCTTCTACTCCGAAGCTTCAGTCCCCGCAGTCGACTCCGTCGTCTGCGGCCAAGAAGAGGCGGCGGACGCGGCCGTGTTTAAGGAGAACGTTGCGGAGGTGATTGAGAGGGTTAAGAGGTCCGCGGCGGAGAATGGGGGGTTTGGGGTAGGGGAAGTGGGTGGGGAGGTGTATGCTTTGGGGCAGTGCTGGAAGACGGTGGATGGTGATGGGTGTAGAGAGTGTTTGGAGAAGGGAGGTGAGGCGGTGAGAGGCTGTGGGTTGAAGACAGAAGGCAAGGCTTTGAATGCTGGATGTTACTTGAGGTATTCGACTCGGAAGTTCTATAATGACGAGGGGGAAGCAGAGCACGAGCATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

193

Amino Acids

21.16

Weight (kDa)

4.91

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	15 - 73	1.4e-10	Salt stress response/antifungal
Stress-antifung	PF01657	89 - 178	1.3e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40380 AT5G40380 AT5G40380
fragaria_vesca	FvH4_4g26070 FvH4_5g05520 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060
malus_domestica	MD14G1177300.v1.1 MD17G1031100.v1.1
prunus_persica	Prupe.3G288600_v2.0.a1 Prupe.5G171200_v2.0.a1
pyrus_communis	pycom14g14810 pycom17g02850
rosa_chinensis	RchiOBHm_Chr2g0089301 RchiOBHm_Chr2g0172611 RchiOBHm_Chr7g0193291
rosa_laevigata	RLG00000004281 RLG00000022120 RLG00000022121 RLG00000022125
rosa_multiflora	Rmu_co8025498.1_g000001 Rmu_sc0017093.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079690 Rroxscaffold_2G00079700 Rroxscaffold_3G00262230
rosa_rugosa	Rorug01G0488900 Rorug02G0246100 Rorug02G0560300 Rorug02G0560400 Rorug07G0008700
rosa_samantha	Rh2AG636700 Rh2AG636900 Rh2BG650100 Rh2BG650300 Rh2CG616800 Rh2CG616900 Rh2DG664300 Rh2DG664400 Rh7BG135300 Rh7CG138300 Rh7DG136300
rosa_wichuraiana	Rw2G052660 Rw2G052670 Rw7G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	2 cut(s)	290, 344
AclI	AACGTT	1 cut(s)	309
AclWI	GGATC	1 cut(s)	142
AcoI	YGGCCR	2 cut(s)	268, 291
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	2 cut(s)	74, 277
AgsI	TTSAA	2 cut(s)	484, 505
AluBI	AGCT	3 cut(s)	19, 222, 236
AluI	AGCT	3 cut(s)	19, 222, 236
Alw21I	GWGCWC	2 cut(s)	21, 570
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	3 cut(s)	76, 268, 291
ApeKI	GCWGC	2 cut(s)	156, 195
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
AspS9I	GGNCC	1 cut(s)	339
AsuHPI	GGTGA	5 cut(s)	16, 331, 437, 470, 478
AvaII	GGWCC	1 cut(s)	339
BaeGI	GKGCMC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	21
BauI	CACGAG	1 cut(s)	569
BbsI	GAAGAC	3 cut(s)	110, 419, 491
Bbv12I	GWGCWC	2 cut(s)	21, 570
BbvI	GCAGC	2 cut(s)	143, 182
BccI	CCATC	2 cut(s)	416, 422
BceAI	ACGGC	3 cut(s)	91, 208, 278
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	217
BisI	GCNGC	8 cut(s)	132, 139, 157, 196, 268, 282, 291, 345
BlsI	GCNGC	8 cut(s)	133, 140, 158, 197, 269, 283, 292, 346
Bme18I	GGWCC	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	43
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	46
BpiI	GAAGAC	3 cut(s)	110, 419, 491
BpuEI	CTTGAG	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 277
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	2 cut(s)	427, 518
BseLI	CCNNNNNNNGG	2 cut(s)	74, 277
BseNI	ACTGG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	44
BseX3I	CGGCCG	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	143, 182
Bsh1236I	CGCG	2 cut(s)	290, 344
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	78, 270, 293
BshNI	GGYRCC	1 cut(s)	41
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	21, 570
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	74, 277
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	2 cut(s)	92, 511
BsnI	GGCC	3 cut(s)	78, 270, 293
Bsp1286I	GDGCHC	3 cut(s)	21, 44, 570
Bsp143I	GATC	1 cut(s)	147
BspANI	GGCC	3 cut(s)	78, 270, 293
BspFNI	CGCG	2 cut(s)	290, 344
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	569
Bst2BI	CACGAG	1 cut(s)	569
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	136, 178
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	427, 518
BstFNI	CGCG	2 cut(s)	290, 344
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 287, 290, 506
BstSFI	CTRYAG	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	2 cut(s)	290, 344
BstV1I	GCAGC	2 cut(s)	143, 182
BstV2I	GAAGAC	3 cut(s)	110, 419, 491
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BstZI	CGGCCG	1 cut(s)	291
BsuRI	GGCC	3 cut(s)	78, 270, 293
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	427, 518
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	3 cut(s)	34, 108, 410
Cac8I	GCNNGC	2 cut(s)	136, 178
Cfr13I	GGNCC	1 cut(s)	339
Cfr42I	CCGCGG	1 cut(s)	345
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	2 cut(s)	70, 575
CviQI	GTAC	1 cut(s)	73
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	2 cut(s)	268, 291
EagI	CGGCCG	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
EciI	GGCGGA	3 cut(s)	163, 299, 362
Ecl136II	GAGCTC	1 cut(s)	19
EclXI	CGGCCG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	339
Eco52I	CGGCCG	1 cut(s)	291
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	2 cut(s)	73, 578
FaiI	YATR	4 cut(s)	71, 393, 546, 576
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	69, 574
FauI	CCCGC	3 cut(s)	161, 185, 253
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	8 cut(s)	132, 139, 157, 196, 268, 282, 291, 345
FokI	GGATG	2 cut(s)	434, 525
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	8 cut(s)	132, 139, 157, 196, 268, 282, 291, 345
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	8 cut(s)	132, 139, 157, 196, 268, 282, 291, 345
HaeIII	GGCC	3 cut(s)	78, 270, 293
HgaI	GACGC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	73, 578
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	2 cut(s)	254, 532
HphI	GGTGA	5 cut(s)	16, 331, 437, 470, 478
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	16, 232, 537
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	2 cut(s)	194, 263
HpyAV	CCTTC	2 cut(s)	445, 485
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	1 cut(s)	309
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 287, 290, 506
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	73, 578
KspI	CCGCGG	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	147
LpnPI	CCDG	5 cut(s)	22, 113, 148, 394, 495
Lsp1109I	GCAGC	2 cut(s)	143, 182
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	4 cut(s)	110, 287, 424, 496
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	3 cut(s)	21, 44, 570
MlyI	GAGTC	2 cut(s)	248, 526
MseI	TTAA	3 cut(s)	54, 300, 333
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	2 cut(s)	156, 344
Mva1269I	GAATGC	2 cut(s)	92, 511
MvnI	CGCG	2 cut(s)	290, 344
MwoI	GCNNNNNNNGC	4 cut(s)	204, 287, 290, 506
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	2 cut(s)	73, 578
NlaIV	GGNNCC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PctI	GAATGC	2 cut(s)	92, 511
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	8 cut(s)	133, 140, 158, 197, 269, 283, 292, 346
PleI	GAGTC	2 cut(s)	248, 526
PpsI	GAGTC	2 cut(s)	248, 526
Psp124BI	GAGCTC	1 cut(s)	21
Psp1406I	AACGTT	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	147
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	573
SacI	GAGCTC	1 cut(s)	21
SacII	CCGCGG	1 cut(s)	345
SalI	GTCGAC	1 cut(s)	251
SaqAI	TTAA	3 cut(s)	54, 300, 333
SatI	GCNGC	8 cut(s)	132, 139, 157, 196, 268, 282, 291, 345
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	339
SchI	GAGTC	2 cut(s)	248, 526
SduI	GDGCHC	3 cut(s)	21, 44, 570
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	1 cut(s)	217
Sfr303I	CCGCGG	1 cut(s)	345
SgrBI	CCGCGG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	189, 252, 530
TauI	GCSGC	6 cut(s)	134, 141, 270, 284, 293, 347
Tru1I	TTAA	3 cut(s)	54, 300, 333
Tru9I	TTAA	3 cut(s)	54, 300, 333
TscAI	CASTG	3 cut(s)	41, 115, 410
TseI	GCWGC	2 cut(s)	156, 195
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	3 cut(s)	41, 115, 410
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.