Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001832

Physical Location & Seq

Genomic Coordinates Reverse (-)

1889382 .. 1891031

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g02850.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTGTACCAAAATCTTGACATGGGTTTTCTTCCTCCTCTCCATATTCTCCTCCGCCGTCTGCGATCCCAGAACGACCCAAGCTGGCCTCTACTGCGGCAGCCGGAAACCGGGGCAGAACCCGAGCTTTATCCCAACTTTCGTCAAAGAAATGGAGGGTCTTTCTCAGCAGATATCGACCCACCGTTGGGGCACCCACTTTGTTAATTCCACGACACCCATGTACGGCCTGGCCCAATGCTTCAATGACCTCTCCCACACCGACTGCCTCCTCTGCTACGCCGCCAGCCGCACGAAAATCCCCCGCTGCCTCCCCTCCCTCTCCGCCACCATATTTCTCGACGGGTGCTTCCTTCGTTACGATTCCTACAGATTTTACCGCCAATCCACCGACTCTTCTCGCGACACCGTGGTCTGCGGCCCGTCGAAACAGGACAAAATCGAAAAGGAGGAGTTTGGGAGGAATGTTGGGTTTGCGATCGGGAATGCAACGGCGGCGGCGGGAAATGGCGGGTTTGGAGTGGCGGAGGTGAAGGGGTCGGTGTTTGCTCTGGCGCAGTGCTGGAAGACTGTGGGGAGTGCTGGGTGTCAAAGTTGCCTGGAGAAGGGAAGTAAGGCGGCGATGGGGTGTGCACCCAGCAAGGAAGGGAGGGCTTTGAATGCTGGGTGTTACCTGAGATATTCGACTGAGAAATTTTATGACGATGCCGGAGGAGCAGAGCAGGTTGCAGATCAAGGCCATGGGCTGTCAGTAAGCAGAGGAATCATCATAGCAGTAATTCTGGCAGCAGCTGCCTTCCTACTGCTCTCTCTCTCTGCTGCTTATGCAGGCTACGCAAAATTGGCAAGGATTAAACAAGAGCGTAGCAATGTAGGCCTGGCCGCAACAAGCATCAACAAGTACTCTAGCTTGAAGTTCAAGTACGAAACGCTCGAAAAGGCCACTGATTATTTCGATTCCTCGAGAAAAATCGGGCAAGGGGGAGGCGGTTCTGTGTTCAAGGGGACGCTTCCGAATGGTGAAACAGTAGCTGTTAAAAGATTGATCTATCAATACGAGGCAATGGGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

358

Amino Acids

38.48

Weight (kDa)

9.03

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40380 AT5G40380 AT5G40380
fragaria_vesca	FvH4_4g26070 FvH4_5g05520 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060
malus_domestica	MD14G1177300.v1.1 MD17G1031100.v1.1
prunus_persica	Prupe.3G288600_v2.0.a1 Prupe.5G171200_v2.0.a1
pyrus_communis	pycom14g14810 pycom17g02850
rosa_chinensis	RchiOBHm_Chr2g0089301 RchiOBHm_Chr2g0172611 RchiOBHm_Chr7g0193291
rosa_laevigata	RLG00000004281 RLG00000022120 RLG00000022121 RLG00000022125
rosa_multiflora	Rmu_co8025498.1_g000001 Rmu_sc0017093.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079690 Rroxscaffold_2G00079700 Rroxscaffold_3G00262230
rosa_rugosa	Rorug01G0488900 Rorug02G0246100 Rorug02G0560300 Rorug02G0560400 Rorug07G0008700
rosa_samantha	Rh2AG636700 Rh2AG636900 Rh2BG650100 Rh2BG650300 Rh2CG616800 Rh2CG616900 Rh2DG664300 Rh2DG664400 Rh7BG135300 Rh7CG138300 Rh7DG136300
rosa_wichuraiana	Rw2G052660 Rw2G052670 Rw7G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
Acc36I	ACCTGC	1 cut(s)	712
AccB1I	GGYRCC	1 cut(s)	191
AccII	CGCG	1 cut(s)	402
AclWI	GGATC	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	879
AcsI	RAATTY	1 cut(s)	692
AfaI	GTAC	4 cut(s)	7, 224, 902, 923
AfiI	CCNNNNNNNGG	5 cut(s)	109, 186, 187, 224, 604
AgsI	TTSAA	5 cut(s)	244, 658, 913, 919, 1000
AjnI	CCWGG	3 cut(s)	228, 597, 876
AluBI	AGCT	5 cut(s)	83, 126, 791, 909, 1031
AluI	AGCT	5 cut(s)	83, 126, 791, 909, 1031
Alw21I	GWGCWC	1 cut(s)	634
Alw44I	GTGCAC	1 cut(s)	630
AlwI	GGATC	1 cut(s)	59
AlwNI	CAGNNNCTG	2 cut(s)	791, 1031
Ama87I	CYCGRG	2 cut(s)	121, 961
AoxI	GGCC	8 cut(s)	85, 226, 231, 418, 736, 874, 879, 939
ApaLI	GTGCAC	1 cut(s)	630
ApeKI	GCWGC	6 cut(s)	99, 306, 785, 788, 791, 818
ApoI	RAATTY	1 cut(s)	692
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	232, 419
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	541, 1031
AvaI	CYCGRG	2 cut(s)	121, 961
BaeGI	GKGCMC	2 cut(s)	194, 634
BanI	GGYRCC	1 cut(s)	191
BarI	GAAGNNNNNNTAC	2 cut(s)	905, 937
BbsI	GAAGAC	1 cut(s)	572
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	6 cut(s)	111, 293, 778, 797, 800, 805
BccI	CCATC	1 cut(s)	616
BceAI	ACGGC	3 cut(s)	41, 241, 507
BciT130I	CCWGG	3 cut(s)	230, 599, 878
BcnI	CCSGG	1 cut(s)	111
BfaI	CTAG	1 cut(s)	906
BfmI	CTRYAG	1 cut(s)	367
BfuAI	ACCTGC	1 cut(s)	712
BmcAI	AGTACT	1 cut(s)	902
Bme1390I	CCNGG	4 cut(s)	111, 230, 599, 878
BmeT110I	CYCGRG	2 cut(s)	121, 961
BmgT120I	GGNCC	2 cut(s)	232, 419
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	4 cut(s)	111, 230, 599, 878
BmsI	GCATC	2 cut(s)	694, 900
BpiI	GAAGAC	1 cut(s)	572
BpmI	CTGGAG	1 cut(s)	620
BpuMI	CCSGG	1 cut(s)	111
BsaJI	CCNNGG	3 cut(s)	110, 408, 739
Bsc4I	CCNNNNNNNGG	5 cut(s)	109, 186, 187, 224, 604
Bse3DI	GCAATG	2 cut(s)	874, 1068
BseBI	CCWGG	3 cut(s)	230, 599, 878
BseDI	CCNNGG	3 cut(s)	110, 408, 739
BseLI	CCNNNNNNNGG	5 cut(s)	109, 186, 187, 224, 604
BseMI	GCAATG	2 cut(s)	874, 1068
BseMII	CTCAG	3 cut(s)	179, 665, 678
BseRI	GAGGAG	5 cut(s)	26, 40, 260, 464, 726
BseSI	GKGCMC	2 cut(s)	194, 634
BseXI	GCAGC	6 cut(s)	111, 293, 778, 797, 800, 805
BseYI	CCCAGC	3 cut(s)	581, 635, 662
Bsh1236I	CGCG	1 cut(s)	402
Bsh1285I	CGRYCG	1 cut(s)	480
BshFI	GGCC	8 cut(s)	87, 228, 233, 420, 738, 876, 881, 941
BshNI	GGYRCC	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	480
BsiHKAI	GWGCWC	1 cut(s)	634
BsiHKCI	CYCGRG	2 cut(s)	121, 961
BsiSI	CCGG	3 cut(s)	103, 110, 708
BslFI	GGGAC	1 cut(s)	1018
BslI	CCNNNNNNNGG	5 cut(s)	109, 186, 187, 224, 604
BsmFI	GGGAC	1 cut(s)	1018
BsmI	GAATGC	2 cut(s)	490, 664
BsnI	GGCC	8 cut(s)	87, 228, 233, 420, 738, 876, 881, 941
BsoBI	CYCGRG	2 cut(s)	121, 961
Bsp1286I	GDGCHC	2 cut(s)	194, 634
Bsp143I	GATC	4 cut(s)	64, 477, 730, 1044
Bsp19I	CCATGG	1 cut(s)	739
Bsp68I	TCGCGA	1 cut(s)	402
BspANI	GGCC	8 cut(s)	87, 228, 233, 420, 738, 876, 881, 941
BspCNI	CTCAG	3 cut(s)	178, 666, 679
BspFNI	CGCG	1 cut(s)	402
BspLI	GGNNCC	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	712
BspPI	GGATC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	874, 1068
BssECI	CCNNGG	3 cut(s)	110, 408, 739
BssMI	GATC	4 cut(s)	64, 477, 730, 1044
BssT1I	CCWWGG	1 cut(s)	739
Bst2UI	CCWGG	3 cut(s)	230, 599, 878
Bst4CI	ACNGT	4 cut(s)	185, 409, 571, 1027
Bst6I	CTCTTC	1 cut(s)	400
BstAPI	GCANNNNNTGC	1 cut(s)	791
BstC8I	GCNNGC	3 cut(s)	85, 286, 829
BstDEI	CTNAG	3 cut(s)	165, 674, 687
BstDSI	CCRYGG	2 cut(s)	408, 739
BstENI	CCTNNNNNAGG	1 cut(s)	602
BstFNI	CGCG	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	4 cut(s)	67, 480, 733, 1047
BstMBI	GATC	4 cut(s)	64, 477, 730, 1044
BstMCI	CGRYCG	1 cut(s)	480
BstNI	CCWGG	3 cut(s)	230, 599, 878
BstSCI	CCNGG	4 cut(s)	109, 228, 597, 876
BstSFI	CTRYAG	1 cut(s)	367
BstSLI	GKGCMC	2 cut(s)	194, 634
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	6 cut(s)	111, 293, 778, 797, 800, 805
BstV2I	GAAGAC	1 cut(s)	572
BsuRI	GGCC	8 cut(s)	87, 228, 233, 420, 738, 876, 881, 941
BtgI	CCRYGG	2 cut(s)	408, 739
BtgZI	GCGATG	1 cut(s)	635
BtsI	GCAGTG	1 cut(s)	563
BtsIMutI	CAGTG	2 cut(s)	563, 942
BtuMI	TCGCGA	1 cut(s)	402
BveI	ACCTGC	1 cut(s)	712
Cac8I	GCNNGC	3 cut(s)	85, 286, 829
CaiI	CAGNNNCTG	2 cut(s)	791, 1031
CfoI	GCGC	1 cut(s)	556
Cfr13I	GGNCC	2 cut(s)	232, 419
CseI	GACGC	1 cut(s)	1015
Csp6I	GTAC	4 cut(s)	6, 223, 901, 922
CviAII	CATG	3 cut(s)	21, 220, 740
CviQI	GTAC	4 cut(s)	6, 223, 901, 922
DdeI	CTNAG	3 cut(s)	165, 674, 687
DpnI	GATC	4 cut(s)	66, 479, 732, 1046
DpnII	GATC	4 cut(s)	64, 477, 730, 1044
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
EaeI	YGGCCR	1 cut(s)	879
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
EciI	GGCGGA	3 cut(s)	43, 313, 539
Eco130I	CCWWGG	1 cut(s)	739
Eco147I	AGGCCT	1 cut(s)	876
Eco32I	GATATC	1 cut(s)	174
Eco88I	CYCGRG	2 cut(s)	121, 961
EcoNI	CCTNNNNNAGG	1 cut(s)	602
EcoRII	CCWGG	3 cut(s)	228, 597, 876
EcoRV	GATATC	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	739
ErhI	CCWWGG	1 cut(s)	739
FaeI	CATG	3 cut(s)	24, 223, 743
FaiI	YATR	8 cut(s)	22, 44, 221, 332, 699, 741, 770, 825
FaqI	GGGAC	1 cut(s)	1018
FatI	CATG	3 cut(s)	20, 219, 739
FauI	CCCGC	3 cut(s)	311, 493, 503
FspBI	CTAG	1 cut(s)	906
GlaI	GCGC	1 cut(s)	555
GsaI	CCCAGC	3 cut(s)	585, 639, 666
GsuI	CTGGAG	1 cut(s)	620
HaeIII	GGCC	8 cut(s)	87, 228, 233, 420, 738, 876, 881, 941
HapII	CCGG	3 cut(s)	103, 110, 708
HgaI	GACGC	1 cut(s)	1015
HhaI	GCGC	1 cut(s)	556
Hin1II	CATG	3 cut(s)	24, 223, 743
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HinfI	GANTC	4 cut(s)	362, 392, 762, 956
HpaII	CCGG	3 cut(s)	103, 110, 708
HphI	GGTGA	2 cut(s)	541, 1031
Hpy166II	GTNNAC	2 cut(s)	6, 632
Hpy188I	TCNGA	1 cut(s)	1014
Hpy188III	TCNNGA	5 cut(s)	16, 338, 401, 481, 963
Hpy8I	GTNNAC	2 cut(s)	6, 632
Hpy99I	CGWCG	2 cut(s)	344, 427
HpyAV	CCTTC	5 cut(s)	362, 526, 598, 638, 805
HpyCH4III	ACNGT	4 cut(s)	185, 409, 571, 1027
HpyCH4V	TGCA	4 cut(s)	488, 632, 728, 827
HpyF3I	CTNAG	3 cut(s)	165, 674, 687
Hsp92II	CATG	3 cut(s)	24, 223, 743
HspAI	GCGC	1 cut(s)	554
Kzo9I	GATC	4 cut(s)	64, 477, 730, 1044
LmnI	GCTCC	1 cut(s)	713
Lsp1109I	GCAGC	6 cut(s)	111, 293, 778, 797, 800, 805
LweI	GCATC	2 cut(s)	694, 900
MaeI	CTAG	1 cut(s)	906
MaeIII	GTNAC	2 cut(s)	356, 668
MalI	GATC	4 cut(s)	66, 479, 732, 1046
MboI	GATC	4 cut(s)	64, 477, 730, 1044
MboII	GAAGA	3 cut(s)	22, 387, 577
MhlI	GDGCHC	2 cut(s)	194, 634
MluCI	AATT	4 cut(s)	205, 692, 777, 839
MlyI	GAGTC	1 cut(s)	386
MseI	TTAA	3 cut(s)	204, 852, 1035
MspA1I	CMGCKG	2 cut(s)	306, 791
MspI	CCGG	3 cut(s)	103, 110, 708
MspR9I	CCNGG	4 cut(s)	111, 230, 599, 878
Mva1269I	GAATGC	2 cut(s)	490, 664
MvaI	CCWGG	3 cut(s)	230, 599, 878
MvnI	CGCG	1 cut(s)	402
NciI	CCSGG	1 cut(s)	111
NcoI	CCATGG	1 cut(s)	739
NdeII	GATC	4 cut(s)	64, 477, 730, 1044
NlaIII	CATG	3 cut(s)	24, 223, 743
NlaIV	GGNNCC	1 cut(s)	193
NruI	TCGCGA	1 cut(s)	402
PaeR7I	CTCGAG	1 cut(s)	961
PceI	AGGCCT	1 cut(s)	876
PcsI	WCGNNNNNNNCGW	1 cut(s)	930
PctI	GAATGC	2 cut(s)	490, 664
PfeI	GAWTC	3 cut(s)	362, 762, 956
Ple19I	CGATCG	1 cut(s)	480
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
Psp6I	CCWGG	3 cut(s)	228, 597, 876
PspFI	CCCAGC	3 cut(s)	581, 635, 662
PspGI	CCWGG	3 cut(s)	228, 597, 876
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	232, 419
PstNI	CAGNNNCTG	2 cut(s)	791, 1031
PvuI	CGATCG	1 cut(s)	480
PvuII	CAGCTG	1 cut(s)	791
RruI	TCGCGA	1 cut(s)	402
RsaI	GTAC	4 cut(s)	7, 224, 902, 923
RsaNI	GTAC	4 cut(s)	6, 223, 901, 922
SaqAI	TTAA	3 cut(s)	204, 852, 1035
Sau3AI	GATC	4 cut(s)	64, 477, 730, 1044
Sau96I	GGNCC	2 cut(s)	232, 419
ScaI	AGTACT	1 cut(s)	902
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	4 cut(s)	111, 230, 599, 878
SduI	GDGCHC	2 cut(s)	194, 634
SetI	ASST	9 cut(s)	85, 128, 252, 531, 675, 726, 793, 911, 1033
SfaNI	GCATC	2 cut(s)	694, 900
SfcI	CTRYAG	1 cut(s)	367
Sfr274I	CTCGAG	1 cut(s)	961
SlaI	CTCGAG	1 cut(s)	961
SmlI	CTYRAG	1 cut(s)	961
SmoI	CTYRAG	1 cut(s)	961
Sse9I	AATT	4 cut(s)	205, 692, 777, 839
SseBI	AGGCCT	1 cut(s)	876
SspMI	CTAG	1 cut(s)	906
StuI	AGGCCT	1 cut(s)	876
StyD4I	CCNGG	4 cut(s)	109, 228, 597, 876
StyI	CCWWGG	1 cut(s)	739
TaaI	ACNGT	4 cut(s)	185, 409, 571, 1027
TaqI	TCGA	9 cut(s)	176, 339, 425, 441, 683, 933, 954, 962, 1069
TasI	AATT	4 cut(s)	205, 692, 777, 839
TatI	WGTACW	1 cut(s)	900
TauI	GCSGC	8 cut(s)	99, 284, 291, 420, 497, 500, 620, 884
TfiI	GAWTC	3 cut(s)	362, 762, 956
Tru1I	TTAA	3 cut(s)	204, 852, 1035
Tru9I	TTAA	3 cut(s)	204, 852, 1035
TscAI	CASTG	2 cut(s)	563, 949
TseI	GCWGC	6 cut(s)	99, 306, 785, 788, 791, 818
TspRI	CASTG	2 cut(s)	563, 949
VneI	GTGCAC	1 cut(s)	630
XagI	CCTNNNNNAGG	1 cut(s)	602
XapI	RAATTY	1 cut(s)	692
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	961
XspI	CTAG	1 cut(s)	906
ZrmI	AGTACT	1 cut(s)	902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.