Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001832

Physical Location & Seq

Genomic Coordinates Reverse (-)

3240909 .. 3242766

Gene Structure 1858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAGGGGTTTAACAGCAAGGTGATGGATGTGATTGGTAACGTGACGGAGAAGGCTGTGGGGAATGAAGGGTTTGCTGTGGTGGGGCAGAGAGGTGGAGTTGAGAGTGTTTATGTATTGGCTCAGTGCTGGAGGACCATGGGCGAGAAAGGGTGTAGAGATTGTTTGGAAGTAGCTGGGAAGAATCTCAGGGGTTGCTTGCCTGGGAAGCAAGGTAGGGCTATGCTGGCAGGGTGTTATATGAGGTACTCTACTGAGAAGTTCTTTGACGTTCAAGAAGATGAACTAAATGGAAATGTGACCAGTGCCCCAGTTGGGACATCAAAATCTCAACACAAGAACAGATTGAATTTCAAGTATGAAATGCTCGAAAAGGCCACTGATTTCTTCAATGCCTCGAGGAAACTAGGGCAAGGTGGAGCTGGTTCTGTATTCAAGGGAACTCTTCCAGATGGGAGCAATATAGCAGTGAAAAGACTATTCTTCAACACAAGGCAATGGGCGGATAACTTCTTCACTGAAGTGAACCTCATTAGTGGTATTCAACACAAGAATCTTGTGAGGCTGTTGGGTTGCAGCATTGAAGGCCCAGAAAGTCTTCTAGTCTATGAATATGTACCCAACAAAAGCCTAGATAAAATCATTTTTGGTTGCAGTGAGCAAGTTCTAAGTTGGCAACAGAGATTTGACATCATTTGTGGCATTGCTGAGGGACTTGTGTATCTTCATGATAGTTGCAGCGAGAAAATTATTCACAGGGACATAAAATCCAGCAACATTCTCCTTGATGAGGATCTTACTCCAAAGATTGCTGATTTCGGACTTGCGGGCTGTGTTGATCCTGATAAGTCTCATCATAGCACAGGAATTGCAGGCACATTAGGTTATATGGCTCCTGAATATCTTGTTCGAGGACAACTAACCGATAAGGCTGATGTGTATGCCTTTGGTGTGCTTGTTCTTGAGATTGTATGTGGCAGGAAGAACCATGTTTTCATGGAGGGTTCAAGCTCAATTCTTAATTCTGTTTATCAGAACTACAGGGCTAATACTAATACCAAATCTGTTGATGCCATCTTGAAAAGTGAGTACCCCGAAAGAGAAGCATCGAATGTACTTCAAATTGGGCTTTTGTGCACTCAAGCTTCTCTTGCACTGAGACCATCCATGTCCGAAGTAGTTCAAATGCTGACTGATAAAGAATGTAGCATTCCTTCACCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

409

Amino Acids

44.88

Weight (kDa)

6.22

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	3 - 85	5.1e-11	Salt stress response/antifungal
Pkinase	PF00069	131 - 395	7.2e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	132 - 397	4.1e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40380 AT5G40380 AT5G40380
fragaria_vesca	FvH4_4g26070 FvH4_5g05520 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060
malus_domestica	MD14G1177300.v1.1 MD17G1031100.v1.1
prunus_persica	Prupe.3G288600_v2.0.a1 Prupe.5G171200_v2.0.a1
pyrus_communis	pycom14g14810 pycom17g02850
rosa_chinensis	RchiOBHm_Chr2g0089301 RchiOBHm_Chr2g0172611 RchiOBHm_Chr7g0193291
rosa_laevigata	RLG00000004281 RLG00000022120 RLG00000022121 RLG00000022125
rosa_multiflora	Rmu_co8025498.1_g000001 Rmu_sc0017093.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079690 Rroxscaffold_2G00079700 Rroxscaffold_3G00262230
rosa_rugosa	Rorug01G0488900 Rorug02G0246100 Rorug02G0560300 Rorug02G0560400 Rorug07G0008700
rosa_samantha	Rh2AG636700 Rh2AG636900 Rh2BG650100 Rh2BG650300 Rh2CG616800 Rh2CG616900 Rh2DG664300 Rh2DG664400 Rh7BG135300 Rh7CG138300 Rh7DG136300
rosa_wichuraiana	Rw2G052660 Rw2G052670 Rw7G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	397
AciI	CCGC	2 cut(s)	503, 827
AclWI	GGATC	2 cut(s)	801, 833
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	540
AfaI	GTAC	4 cut(s)	248, 618, 1091, 1116
AfiI	CCNNNNNNNGG	2 cut(s)	315, 790
AjnI	CCWGG	1 cut(s)	202
AleI	CACNNNNGTG	1 cut(s)	521
AluBI	AGCT	4 cut(s)	176, 422, 1011, 1145
AluI	AGCT	4 cut(s)	176, 422, 1011, 1145
Alw21I	GWGCWC	1 cut(s)	1139
Alw26I	GTCTC	2 cut(s)	855, 1153
Alw44I	GTGCAC	1 cut(s)	1135
AlwI	GGATC	2 cut(s)	801, 833
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	2 cut(s)	375, 586
ApaLI	GTGCAC	1 cut(s)	1135
ApeKI	GCWGC	2 cut(s)	576, 738
ApoI	RAATTY	1 cut(s)	349
Asp700I	GAANNNNTTC	2 cut(s)	597, 1179
AspS9I	GGNCC	2 cut(s)	135, 587
AsuHPI	GGTGA	2 cut(s)	34, 1209
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	135
BaeGI	GKGCMC	2 cut(s)	310, 1139
BaeI	ACNNNNGTAYC	2 cut(s)	704, 737
BarI	GAAGNNNNNNTAC	1 cut(s)	1198
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	1139
BbvCI	CCTCAGC	1 cut(s)	708
BbvI	GCAGC	2 cut(s)	588, 750
BccI	CCATC	4 cut(s)	19, 446, 1082, 1171
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	855, 1153
BfaI	CTAG	3 cut(s)	407, 602, 632
BfmI	CTRYAG	1 cut(s)	1039
BisI	GCNGC	2 cut(s)	577, 739
BlsI	GCNGC	2 cut(s)	578, 740
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	397
BmgT120I	GGNCC	2 cut(s)	135, 587
BmiI	GGNNCC	1 cut(s)	894
BmrFI	CCNGG	1 cut(s)	204
BmrI	ACTGGG	1 cut(s)	305
BmsI	GCATC	2 cut(s)	1060, 1115
BmuI	ACTGGG	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	590
BpmI	CTGGAG	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	708
BpuEI	CTTGAG	2 cut(s)	983, 1125
BsaBI	GATNNNNATC	1 cut(s)	792
BsaI	GGTCTC	1 cut(s)	1153
BsaJI	CCNNGG	2 cut(s)	138, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 790
Bse1I	ACTGG	2 cut(s)	303, 311
Bse3DI	GCAATG	2 cut(s)	503, 702
Bse8I	GATNNNNATC	1 cut(s)	792
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	138, 203
BseGI	GGATG	2 cut(s)	34, 1163
BseJI	GATNNNNATC	1 cut(s)	792
BseLI	CCNNNNNNNGG	2 cut(s)	315, 790
BseMI	GCAATG	2 cut(s)	503, 702
BseMII	CTCAG	5 cut(s)	137, 202, 246, 699, 1148
BseNI	ACTGG	2 cut(s)	303, 311
BseSI	GKGCMC	2 cut(s)	310, 1139
BseXI	GCAGC	2 cut(s)	588, 750
BseYI	CCCAGC	1 cut(s)	176
BshFI	GGCC	2 cut(s)	377, 588
BsiHKAI	GWGCWC	1 cut(s)	1139
BsiHKCI	CYCGRG	1 cut(s)	397
BslFI	GGGAC	3 cut(s)	331, 726, 773
BslI	CCNNNNNNNGG	2 cut(s)	315, 790
BsmAI	GTCTC	2 cut(s)	855, 1153
BsmFI	GGGAC	3 cut(s)	331, 726, 773
BsmI	GAATGC	1 cut(s)	1209
BsnI	GGCC	2 cut(s)	377, 588
Bso31I	GGTCTC	1 cut(s)	1153
BsoBI	CYCGRG	1 cut(s)	397
Bsp1286I	GDGCHC	2 cut(s)	310, 1139
Bsp143I	GATC	2 cut(s)	793, 838
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	2 cut(s)	503, 827
BspANI	GGCC	2 cut(s)	377, 588
BspCNI	CTCAG	5 cut(s)	136, 201, 247, 700, 1149
BspHI	TCATGA	1 cut(s)	727
BspLI	GGNNCC	1 cut(s)	894
BspPI	GGATC	2 cut(s)	801, 833
BspTNI	GGTCTC	1 cut(s)	1153
BsrDI	GCAATG	2 cut(s)	503, 702
BsrI	ACTGG	2 cut(s)	303, 311
BssECI	CCNNGG	2 cut(s)	138, 203
BssMI	GATC	2 cut(s)	793, 838
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	450
BstC8I	GCNNGC	4 cut(s)	200, 228, 829, 874
BstDEI	CTNAG	6 cut(s)	123, 188, 255, 668, 708, 1157
BstDSI	CCRYGG	1 cut(s)	138
BstENI	CCTNNNNNAGG	1 cut(s)	788
BstF5I	GGATG	2 cut(s)	34, 1163
BstKTI	GATC	2 cut(s)	796, 841
BstMAI	GTCTC	2 cut(s)	855, 1153
BstMBI	GATC	2 cut(s)	793, 838
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 227, 585, 1151
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	1039
BstSLI	GKGCMC	2 cut(s)	310, 1139
BstV1I	GCAGC	2 cut(s)	588, 750
BstV2I	GAAGAC	1 cut(s)	590
BstX2I	RGATCY	1 cut(s)	793
BstYI	RGATCY	1 cut(s)	793
BsuRI	GGCC	2 cut(s)	377, 588
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	34, 1163
BtsI	GCAGTG	2 cut(s)	474, 661
BtsIMutI	CAGTG	7 cut(s)	131, 310, 378, 474, 516, 661, 1154
Cac8I	GCNNGC	4 cut(s)	200, 228, 829, 874
CciI	TCATGA	1 cut(s)	727
Cfr13I	GGNCC	2 cut(s)	135, 587
Csp6I	GTAC	4 cut(s)	247, 617, 1090, 1115
CviAII	CATG	5 cut(s)	139, 728, 989, 997, 1168
CviQI	GTAC	4 cut(s)	247, 617, 1090, 1115
DdeI	CTNAG	6 cut(s)	123, 188, 255, 668, 708, 1157
DpnI	GATC	2 cut(s)	795, 840
DpnII	GATC	2 cut(s)	793, 838
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
EciI	GGCGGA	1 cut(s)	518
Eco130I	CCWWGG	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	1153
Eco47I	GGWCC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	397
EcoNI	CCTNNNNNAGG	1 cut(s)	788
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	5 cut(s)	142, 731, 992, 1000, 1171
FalI	AAGNNNNNCTT	2 cut(s)	1134, 1166
FaqI	GGGAC	3 cut(s)	331, 726, 773
FatI	CATG	5 cut(s)	138, 727, 988, 996, 1167
FauI	CCCGC	1 cut(s)	820
Fnu4HI	GCNGC	2 cut(s)	577, 739
FokI	GGATG	2 cut(s)	41, 1150
Fsp4HI	GCNGC	2 cut(s)	577, 739
FspBI	CTAG	3 cut(s)	407, 602, 632
GluI	GCNGC	2 cut(s)	577, 739
GsaI	CCCAGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	377, 588
Hin1II	CATG	5 cut(s)	142, 731, 992, 1000, 1171
HindIII	AAGCTT	1 cut(s)	1143
HinfI	GANTC	2 cut(s)	184, 553
HphI	GGTGA	2 cut(s)	34, 1209
Hpy166II	GTNNAC	2 cut(s)	526, 1137
Hpy188I	TCNGA	3 cut(s)	821, 1035, 1174
Hpy188III	TCNNGA	7 cut(s)	275, 449, 728, 842, 896, 962, 1078
Hpy8I	GTNNAC	2 cut(s)	526, 1137
HpyAV	CCTTC	4 cut(s)	46, 62, 578, 1224
HpyCH4IV	ACGT	2 cut(s)	42, 270
HpyCH4V	TGCA	6 cut(s)	576, 654, 738, 872, 1137, 1154
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 227, 585, 1151
HpyF3I	CTNAG	6 cut(s)	123, 188, 255, 668, 708, 1157
HpySE526I	ACGT	2 cut(s)	42, 270
Hsp92II	CATG	5 cut(s)	142, 731, 992, 1000, 1171
Kzo9I	GATC	2 cut(s)	793, 838
LmnI	GCTCC	3 cut(s)	419, 456, 898
Lsp1109I	GCAGC	2 cut(s)	588, 750
LweI	GCATC	2 cut(s)	1060, 1115
MaeI	CTAG	3 cut(s)	407, 602, 632
MaeII	ACGT	2 cut(s)	42, 270
MaeIII	GTNAC	3 cut(s)	38, 43, 298
MalI	GATC	2 cut(s)	795, 840
MboI	GATC	2 cut(s)	793, 838
MboII	GAAGA	9 cut(s)	193, 290, 379, 437, 475, 505, 590, 716, 994
MflI	RGATCY	1 cut(s)	793
MhlI	GDGCHC	2 cut(s)	310, 1139
MluCI	AATT	6 cut(s)	349, 747, 867, 1014, 1021, 1122
MroXI	GAANNNNTTC	2 cut(s)	597, 1179
MseI	TTAA	2 cut(s)	12, 1020
MslI	CAYNNNNRTG	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	1209
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	4 cut(s)	208, 227, 585, 1151
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	2 cut(s)	793, 838
NlaIII	CATG	5 cut(s)	142, 731, 992, 1000, 1171
NlaIV	GGNNCC	1 cut(s)	894
NmuCI	GTSAC	2 cut(s)	43, 298
OliI	CACNNNNGTG	1 cut(s)	521
PaeR7I	CTCGAG	1 cut(s)	397
PagI	TCATGA	1 cut(s)	727
PctI	GAATGC	1 cut(s)	1209
PdmI	GAANNNNTTC	2 cut(s)	597, 1179
PfeI	GAWTC	2 cut(s)	184, 553
PkrI	GCNGC	2 cut(s)	578, 740
Psp6I	CCWGG	1 cut(s)	202
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	894
PspPI	GGNCC	2 cut(s)	135, 587
PspXI	VCTCGAGB	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	793
RsaI	GTAC	4 cut(s)	248, 618, 1091, 1116
RsaNI	GTAC	4 cut(s)	247, 617, 1090, 1115
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	2 cut(s)	12, 1020
SatI	GCNGC	2 cut(s)	577, 739
Sau3AI	GATC	2 cut(s)	793, 838
Sau96I	GGNCC	2 cut(s)	135, 587
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	2 cut(s)	310, 1139
SfaNI	GCATC	2 cut(s)	1060, 1115
SfcI	CTRYAG	1 cut(s)	1039
Sfr274I	CTCGAG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	135
SlaI	CTCGAG	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	3 cut(s)	397, 962, 1140
SmoI	CTYRAG	3 cut(s)	397, 962, 1140
Sse9I	AATT	6 cut(s)	349, 747, 867, 1014, 1021, 1122
SsiI	CCGC	2 cut(s)	503, 827
SspMI	CTAG	3 cut(s)	407, 602, 632
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	1 cut(s)	138
TaiI	ACGT	2 cut(s)	45, 273
TaqI	TCGA	4 cut(s)	369, 398, 910, 1109
TasI	AATT	6 cut(s)	349, 747, 867, 1014, 1021, 1122
TatI	WGTACW	1 cut(s)	1114
TfiI	GAWTC	2 cut(s)	184, 553
Tru1I	TTAA	2 cut(s)	12, 1020
Tru9I	TTAA	2 cut(s)	12, 1020
TscAI	CASTG	7 cut(s)	131, 310, 385, 474, 523, 661, 1161
TseFI	GTSAC	2 cut(s)	43, 298
TseI	GCWGC	2 cut(s)	576, 738
Tsp45I	GTSAC	2 cut(s)	43, 298
TspDTI	ATGAA	6 cut(s)	81, 297, 375, 624, 716, 985
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	7 cut(s)	131, 310, 385, 474, 523, 661, 1161
VneI	GTGCAC	1 cut(s)	1135
VpaK11BI	GGWCC	1 cut(s)	135
XagI	CCTNNNNNAGG	1 cut(s)	788
XapI	RAATTY	1 cut(s)	349
XhoI	CTCGAG	1 cut(s)	397
XmnI	GAANNNNTTC	2 cut(s)	597, 1179
XspI	CTAG	3 cut(s)	407, 602, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.