Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001832

Physical Location & Seq

Genomic Coordinates Forward (+)

79261918 .. 79271129

Gene Structure 9212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG616800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCTCCGTAACAACTTTGGGACTGCGGAAGAGGGTGAGCCTCCTGACCGGCTTTATATGTTGGCTCAGTGCATGACAGATCTTTCGGTCAATGAATGTAAGACGTGCTATGATTTGAGTAATCATGCCTTGGCTGGTTGCCTTCCTAACACAGGAGGTCGTGCTTTATTTGATGGTTGCTTTATAAGGGCTGAAAATTACAGCTTCTTTGATGAGACATTCCAAGATAAAGATTTCAAGCATTGCAGCGACAATGCCGAGTTCAATCAGAAATTTAACCAAACACCAGAGAAAGTGTTCAAAAAACTTGTGAAGTTGGCTGAGCATAATGATGGATTTGCAGTCGCCAAAGATAGCTCAAATGGTTTTAATGGTTTTACAGTGTTTGCTATGGCTAATTGCTGGAGGAGTCTAGACAGTAGTAAGTGTTCTTCATGTGTAGAAAATGCAGCCAACCGTGCAATTTCATGCTTGCCATCGTCTGAGGGTCGTGTGCTCAATTCTGGCTGCGTTTTACGTTACTCTGATTATTACTTTGGCAATAACCCTCGAGCCCTCGAAATCAAAGCTAAGGGAAAGGAGAGGGAGATGGCAGTTTTTAACCAAAGCTCAGAGTTCCAGAATTTTAAGTACTCAACACTAGTGAAAGCAACCGAGTGCTTCGATGAAGCCCATAAGCTTGGTCAAGGAGCATATGGTGAAGTATTTAAGGTGTGGGACCATGTCCAAAATAATACGATTTCTCGAATTATCGATAAGAGTATGAAGATTGAAGACATTGAAGAAATTAAAAGAGTTGTTCAGGTGGGTCTGTTGTGCACTCAAGAATTACCAGAGTTACGTCCTACCATGACATCAGTAATTCGAATGCTTATACGAAGAGACTTGGCATTGCCAGAGCCATCAAAGCCACCTTTCCTTGATATTGTATATATGAAACATCATCATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

317

Amino Acids

35.97

Weight (kDa)

6.16

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	4 - 67	5.8e-10	Salt stress response/antifungal
Stress-antifung	PF01657	82 - 177	2.1e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40380 AT5G40380 AT5G40380
fragaria_vesca	FvH4_4g26070 FvH4_5g05520 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060
malus_domestica	MD14G1177300.v1.1 MD17G1031100.v1.1
prunus_persica	Prupe.3G288600_v2.0.a1 Prupe.5G171200_v2.0.a1
pyrus_communis	pycom14g14810 pycom17g02850
rosa_chinensis	RchiOBHm_Chr2g0089301 RchiOBHm_Chr2g0172611 RchiOBHm_Chr7g0193291
rosa_laevigata	RLG00000004281 RLG00000022120 RLG00000022121 RLG00000022125
rosa_multiflora	Rmu_co8025498.1_g000001 Rmu_sc0017093.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079690 Rroxscaffold_2G00079700 Rroxscaffold_3G00262230
rosa_rugosa	Rorug01G0488900 Rorug02G0246100 Rorug02G0560300 Rorug02G0560400 Rorug07G0008700
rosa_samantha	Rh2AG636700 Rh2AG636900 Rh2BG650100 Rh2BG650300 Rh2CG616800 Rh2CG616900 Rh2DG664300 Rh2DG664400 Rh7BG135300 Rh7CG138300 Rh7DG136300
rosa_wichuraiana	Rw2G052660 Rw2G052670 Rw7G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	185
AciI	CCGC	1 cut(s)	26
AcsI	RAATTY	2 cut(s)	272, 622
AfaI	GTAC	1 cut(s)	632
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	5 cut(s)	238, 265, 301, 773, 782
AhlI	ACTAGT	1 cut(s)	640
AjiI	CACGTC	1 cut(s)	105
AluBI	AGCT	5 cut(s)	204, 357, 569, 609, 679
AluI	AGCT	5 cut(s)	204, 357, 569, 609, 679
Alw21I	GWGCWC	2 cut(s)	498, 821
Alw26I	GTCTC	2 cut(s)	209, 876
Alw44I	GTGCAC	1 cut(s)	817
Ama87I	CYCGRG	1 cut(s)	549
ApaLI	GTGCAC	1 cut(s)	817
ApeKI	GCWGC	3 cut(s)	246, 449, 507
ApoI	RAATTY	2 cut(s)	272, 622
ArsI	GACNNNNNNTTYG	2 cut(s)	67, 99
Asp700I	GAANNNNTTC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	718
AsuHPI	GGTGA	2 cut(s)	47, 710
AsuII	TTCGAA	1 cut(s)	865
AvaI	CYCGRG	1 cut(s)	549
AvaII	GGWCC	1 cut(s)	718
BaeGI	GKGCMC	1 cut(s)	821
BanII	GRGCYC	1 cut(s)	556
BarI	GAAGNNNNNNTAC	2 cut(s)	415, 447
BbsI	GAAGAC	1 cut(s)	780
Bbv12I	GWGCWC	2 cut(s)	498, 821
BbvI	GCAGC	3 cut(s)	258, 461, 494
BccI	CCATC	5 cut(s)	167, 326, 484, 583, 910
BcoDI	GTCTC	2 cut(s)	209, 876
BcuI	ACTAGT	1 cut(s)	640
BfaI	CTAG	2 cut(s)	413, 641
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	3 cut(s)	247, 450, 508
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	3 cut(s)	248, 451, 509
BmcAI	AGTACT	1 cut(s)	632
Bme18I	GGWCC	1 cut(s)	718
BmeT110I	CYCGRG	1 cut(s)	549
BmgBI	CACGTC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	718
BmiI	GGNNCC	1 cut(s)	719
BpiI	GAAGAC	1 cut(s)	780
BpmI	CTGGAG	1 cut(s)	424
Bpu10I	CCTNAGC	1 cut(s)	570
Bpu1102I	GCTNAGC	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	865
BpuEI	CTTGAG	1 cut(s)	807
Bsa29I	ATCGAT	1 cut(s)	753
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse118I	RCCGGY	1 cut(s)	48
Bse3DI	GCAATG	2 cut(s)	241, 890
BseCI	ATCGAT	1 cut(s)	753
BseDI	CCNNGG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMI	GCAATG	2 cut(s)	241, 890
BseMII	CTCAG	4 cut(s)	80, 312, 474, 624
BseRI	GAGGAG	1 cut(s)	421
BseSI	GKGCMC	1 cut(s)	821
BseXI	GCAGC	3 cut(s)	258, 461, 494
BshVI	ATCGAT	1 cut(s)	753
BsiHKAI	GWGCWC	2 cut(s)	498, 821
BsiHKCI	CYCGRG	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	2 cut(s)	34, 731
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	2 cut(s)	209, 876
BsmFI	GGGAC	2 cut(s)	34, 731
BsmI	GAATGC	1 cut(s)	873
BsoBI	CYCGRG	1 cut(s)	549
Bsp119I	TTCGAA	1 cut(s)	865
Bsp1286I	GDGCHC	3 cut(s)	498, 556, 821
Bsp143I	GATC	1 cut(s)	79
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	1 cut(s)	26
BspCNI	CTCAG	4 cut(s)	79, 313, 475, 623
BspDI	ATCGAT	1 cut(s)	753
BspLI	GGNNCC	1 cut(s)	719
BspT104I	TTCGAA	1 cut(s)	865
BsrDI	GCAATG	2 cut(s)	241, 890
BsrFI	RCCGGY	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	3 cut(s)	382, 419, 458
Bst6I	CTCTTC	2 cut(s)	24, 874
BstBI	TTCGAA	1 cut(s)	865
BstC8I	GCNNGC	1 cut(s)	473
BstDEI	CTNAG	5 cut(s)	66, 321, 483, 570, 610
BstENI	CCTNNNNNAGG	1 cut(s)	150
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	2 cut(s)	209, 876
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	458, 907
BstSLI	GKGCMC	1 cut(s)	821
BstV1I	GCAGC	3 cut(s)	258, 461, 494
BstV2I	GAAGAC	1 cut(s)	780
BstX2I	RGATCY	1 cut(s)	79
BstXI	CCANNNNNNTGG	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	753
BsuTUI	ATCGAT	1 cut(s)	753
BtrI	CACGTC	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	74, 387
Cac8I	GCNNGC	1 cut(s)	473
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	718
ClaI	ATCGAT	1 cut(s)	753
Csp6I	GTAC	1 cut(s)	631
CviAII	CATG	6 cut(s)	73, 125, 435, 468, 722, 850
CviQI	GTAC	1 cut(s)	631
DdeI	CTNAG	5 cut(s)	66, 321, 483, 570, 610
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	24, 874
EarI	CTCTTC	2 cut(s)	24, 874
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	718
Eco88I	CYCGRG	1 cut(s)	549
EcoNI	CCTNNNNNAGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	6 cut(s)	76, 128, 438, 471, 725, 853
FaqI	GGGAC	2 cut(s)	34, 731
FatI	CATG	6 cut(s)	72, 124, 434, 467, 721, 849
FauNDI	CATATG	1 cut(s)	694
Fnu4HI	GCNGC	3 cut(s)	247, 450, 508
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	3 cut(s)	247, 450, 508
FspBI	CTAG	2 cut(s)	413, 641
GluI	GCNGC	3 cut(s)	247, 450, 508
GsuI	CTGGAG	1 cut(s)	424
HapII	CCGG	1 cut(s)	49
Hin1II	CATG	6 cut(s)	76, 128, 438, 471, 725, 853
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	1 cut(s)	409
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	2 cut(s)	47, 710
Hpy166II	GTNNAC	1 cut(s)	819
Hpy188I	TCNGA	4 cut(s)	270, 484, 526, 613
Hpy188III	TCNNGA	5 cut(s)	44, 413, 619, 744, 824
Hpy8I	GTNNAC	1 cut(s)	819
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	3 cut(s)	382, 419, 458
HpyCH4IV	ACGT	3 cut(s)	104, 517, 841
HpyCH4V	TGCA	6 cut(s)	72, 246, 341, 449, 461, 819
HpyF10VI	GCNNNNNNNGC	2 cut(s)	458, 907
HpyF3I	CTNAG	5 cut(s)	66, 321, 483, 570, 610
HpySE526I	ACGT	3 cut(s)	104, 517, 841
Hsp92II	CATG	6 cut(s)	76, 128, 438, 471, 725, 853
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	2 cut(s)	9, 689
Lsp1109I	GCAGC	3 cut(s)	258, 461, 494
MaeI	CTAG	2 cut(s)	413, 641
MaeII	ACGT	3 cut(s)	104, 517, 841
MaeIII	GTNAC	3 cut(s)	8, 518, 837
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	6 cut(s)	41, 423, 778, 785, 794, 891
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	3 cut(s)	498, 556, 821
MlyI	GAGTC	1 cut(s)	418
MnlI	CCTC	8 cut(s)	25, 51, 149, 399, 478, 558, 566, 576
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	6 cut(s)	276, 369, 600, 627, 708, 789
MslI	CAYNNNNRTG	1 cut(s)	330
MspI	CCGG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	873
MwoI	GCNNNNNNNGC	2 cut(s)	458, 907
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	6 cut(s)	76, 128, 438, 471, 725, 853
NlaIV	GGNNCC	1 cut(s)	719
NmeAIII	GCCGAG	1 cut(s)	283
NspV	TTCGAA	1 cut(s)	865
PaeR7I	CTCGAG	1 cut(s)	549
PctI	GAATGC	1 cut(s)	873
PdmI	GAANNNNTTC	1 cut(s)	296
PflFI	GACNNNGTC	1 cut(s)	722
PkrI	GCNGC	3 cut(s)	248, 451, 509
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
PsiI	TTATAA	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	719
PspPI	GGNCC	1 cut(s)	718
PspXI	VCTCGAGB	1 cut(s)	549
PsrI	GAACNNNNNNTAC	2 cut(s)	412, 444
PsuI	RGATCY	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	722
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	6 cut(s)	276, 369, 600, 627, 708, 789
SatI	GCNGC	3 cut(s)	247, 450, 508
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	718
ScaI	AGTACT	1 cut(s)	632
SchI	GAGTC	1 cut(s)	418
SduI	GDGCHC	3 cut(s)	498, 556, 821
Sfr274I	CTCGAG	1 cut(s)	549
SfuI	TTCGAA	1 cut(s)	865
SinI	GGWCC	1 cut(s)	718
SlaI	CTCGAG	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	2 cut(s)	549, 822
SmoI	CTYRAG	2 cut(s)	549, 822
SpeI	ACTAGT	1 cut(s)	640
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	2 cut(s)	413, 641
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	3 cut(s)	382, 419, 458
TaiI	ACGT	3 cut(s)	107, 520, 844
TaqI	TCGA	6 cut(s)	550, 558, 663, 745, 753, 865
TaqII	GACCGA	1 cut(s)	76
TatI	WGTACW	1 cut(s)	630
Tru1I	TTAA	6 cut(s)	276, 369, 600, 627, 708, 789
Tru9I	TTAA	6 cut(s)	276, 369, 600, 627, 708, 789
TscAI	CASTG	2 cut(s)	74, 387
TseI	GCWGC	3 cut(s)	246, 449, 507
TspDTI	ATGAA	6 cut(s)	108, 423, 456, 681, 779, 950
TspRI	CASTG	2 cut(s)	74, 387
Tth111I	GACNNNGTC	1 cut(s)	722
VneI	GTGCAC	1 cut(s)	817
VpaK11BI	GGWCC	1 cut(s)	718
XagI	CCTNNNNNAGG	1 cut(s)	150
XapI	RAATTY	2 cut(s)	272, 622
XbaI	TCTAGA	1 cut(s)	412
XhoI	CTCGAG	1 cut(s)	549
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	2 cut(s)	413, 641
ZrmI	AGTACT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.