Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001832

Physical Location & Seq

Genomic Coordinates Forward (+)

81140634 .. 81143045

Gene Structure 2412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022125

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGTACGGCCTAGCACAATGCTACAACGACCTGTCGCACACCGACTGCCTCCTCTGCTACGCCGCCAGCCGCACCGAGATCCCCCGCTGCCTCCCCTCCCTCTCCGCTCGCATCTTTCTCGACGGCTGCTTCCTCCGCTACAACAACTACAGCTTCTACTCCGAAGCTTCCGTCCCCGCCTTCGACTACGTCGTCTGCGGCGGAGATGACGCGGCGGTGTTTAAGGAGAATGTTGCGGAGTGCTGGAAGACGGTGGATGGTGATGGGTGTAGTGAGTGTTTGGAGAAGGGAGGGTTTACAGATAGAAGGGGAATCATCGTAGCAATTGTTTTGGGAGCAGTTGCTTTCACAATGCTGTCTCTCTTTGCTGCTTATGCAGGCTATACAAAGCTGGTGCAGATCAGAAAAGAGTGCAGTAATCTAAGCTTGGTGTCAATAAGCATTAGCAAGTATTCTGGCTTGAGTTTCAAGTATGAAACACTAGAGAAGGCCACAGATTATTTTAACACCTCGAGAAAAATAGGGGAAGGGGGAGGTGGTACTGGTTTATATGAATACTATTTCAGTATTTCTGCTGGTCGGTTTGATATTATTGTCGGAACAGCTGTAGGGATTGCGTATCTTCATGAAGGCTCTAAAGTAAGAATAATCCACAGGGACATAAAAAGCAGCAATATTCTTCTGGATGAGAATCTCAGCCCCAAAATTGCAGACTTTGGCCTAGCTCGGTGTTTTGCTTCAGACAAGTCTCATCTGAGCACCGGCATTGCTGGAACACTATGTTATATGGCCCCAGAGTACCTTGTTCAAGGGCAACTTACAAAGAAAGCAGACGTTTATAGCTTCGGAGTGCTAGTTCTCGAGATTGTGTCTGGTATGAGGAATAGCACCTTCAAACAGGCGGACACTGACTTTGATTCACTACTACACAAAGTTTGGAAACACTACAGATCAAACGAGTTGGTCAACGTGGTTGATCCTTGCTTGGGAGATCAGGAGTTGCCGGCAAAAGAGGTATCAAATGTTCTTCAAATTGGACTTCTGTGCACACAGGCCTCAGTTGCTTTGAGACCATCTGTGGCTGAAGAAGCCAGCTCCATTAGGTCTAATAGCGCAAACCGCTTCGTCTCAAATACTTTAACGAAAGTTGAGACGTCCTACACCTCATCAGAGTCTTCCACCACGCCTAGTTTGGATAATATGGGACATATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

406

Amino Acids

44.25

Weight (kDa)

5.6

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	1 - 50	4.3e-09	Salt stress response/antifungal
PK_Tyr_Ser-Thr	PF07714	195 - 318	9.4e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	197 - 382	1.5e-26	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40380 AT5G40380 AT5G40380
fragaria_vesca	FvH4_4g26070 FvH4_5g05520 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060
malus_domestica	MD14G1177300.v1.1 MD17G1031100.v1.1
prunus_persica	Prupe.3G288600_v2.0.a1 Prupe.5G171200_v2.0.a1
pyrus_communis	pycom14g14810 pycom17g02850
rosa_chinensis	RchiOBHm_Chr2g0089301 RchiOBHm_Chr2g0172611 RchiOBHm_Chr7g0193291
rosa_laevigata	RLG00000004281 RLG00000022120 RLG00000022121 RLG00000022125
rosa_multiflora	Rmu_co8025498.1_g000001 Rmu_sc0017093.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079690 Rroxscaffold_2G00079700 Rroxscaffold_3G00262230
rosa_rugosa	Rorug01G0488900 Rorug02G0246100 Rorug02G0560300 Rorug02G0560400 Rorug07G0008700
rosa_samantha	Rh2AG636700 Rh2AG636900 Rh2BG650100 Rh2BG650300 Rh2CG616800 Rh2CG616900 Rh2DG664300 Rh2DG664400 Rh7BG135300 Rh7CG138300 Rh7DG136300
rosa_wichuraiana	Rw2G052660 Rw2G052670 Rw7G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AatII	GACGTC	1 cut(s)	1157
AccBSI	CCGCTC	1 cut(s)	107
AccII	CGCG	1 cut(s)	212
AclWI	GGATC	2 cut(s)	73, 971
AcuI	CTGAAG	2 cut(s)	723, 1104
AcyI	GRCGYC	1 cut(s)	1154
AfaI	GTAC	3 cut(s)	5, 541, 800
AfiI	CCNNNNNNNGG	1 cut(s)	986
AgsI	TTSAA	4 cut(s)	469, 809, 895, 1031
AloI	GAACNNNNNNTCC	2 cut(s)	840, 872
AluBI	AGCT	8 cut(s)	153, 167, 391, 426, 605, 725, 843, 1095
AluI	AGCT	8 cut(s)	153, 167, 391, 426, 605, 725, 843, 1095
Alw21I	GWGCWC	2 cut(s)	761, 1049
Alw26I	GTCTC	5 cut(s)	363, 753, 1063, 1132, 1145
Alw44I	GTGCAC	1 cut(s)	1045
AlwI	GGATC	2 cut(s)	73, 971
Ama87I	CYCGRG	2 cut(s)	511, 860
AoxI	GGCC	5 cut(s)	7, 489, 718, 789, 1053
ApaLI	GTGCAC	1 cut(s)	1045
ApeKI	GCWGC	4 cut(s)	87, 126, 368, 669
ArsI	GACNNNNNNTTYG	4 cut(s)	156, 188, 896, 928
AspLEI	GCGC	1 cut(s)	1115
AspS9I	GGNCC	1 cut(s)	790
AsuHPI	GGTGA	1 cut(s)	272
AvaI	CYCGRG	2 cut(s)	511, 860
BaeGI	GKGCMC	1 cut(s)	1049
BbsI	GAAGAC	2 cut(s)	254, 1167
Bbv12I	GWGCWC	2 cut(s)	761, 1049
BbvI	GCAGC	4 cut(s)	74, 113, 355, 681
BccI	CCATC	3 cut(s)	251, 257, 1081
BceAI	ACGGC	2 cut(s)	22, 139
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BcoDI	GTCTC	5 cut(s)	363, 753, 1063, 1132, 1145
BfaI	CTAG	5 cut(s)	11, 482, 722, 854, 1188
BfmI	CTRYAG	3 cut(s)	148, 606, 946
BisI	GCNGC	8 cut(s)	63, 70, 88, 127, 199, 213, 369, 670
BlsI	GCNGC	8 cut(s)	64, 71, 89, 128, 200, 214, 370, 671
BmeT110I	CYCGRG	2 cut(s)	511, 860
BmgT120I	GGNCC	1 cut(s)	790
BmiI	GGNNCC	1 cut(s)	792
BmsI	GCATC	1 cut(s)	120
BpiI	GAAGAC	2 cut(s)	254, 1167
BpuEI	CTTGAG	1 cut(s)	481
BsaBI	GATNNNNATC	1 cut(s)	690
BsaHI	GRCGYC	1 cut(s)	1154
BsaI	GGTCTC	1 cut(s)	1063
BsaXI	ACNNNNNCTCC	2 cut(s)	840, 870
Bsc4I	CCNNNNNNNGG	1 cut(s)	986
Bse118I	RCCGGY	2 cut(s)	761, 1003
Bse1I	ACTGG	1 cut(s)	547
Bse3DI	GCAATG	1 cut(s)	765
Bse8I	GATNNNNATC	1 cut(s)	690
BseGI	GGATG	2 cut(s)	262, 691
BseJI	GATNNNNATC	1 cut(s)	690
BseLI	CCNNNNNNNGG	1 cut(s)	986
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	3 cut(s)	709, 746, 1071
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	1049
BseXI	GCAGC	4 cut(s)	74, 113, 355, 681
BsgI	GTGCAG	2 cut(s)	416, 433
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	5 cut(s)	9, 491, 720, 791, 1055
BsiHKAI	GWGCWC	2 cut(s)	761, 1049
BsiHKCI	CYCGRG	2 cut(s)	511, 860
BsiSI	CCGG	2 cut(s)	762, 1004
BslFI	GGGAC	2 cut(s)	158, 671
BslI	CCNNNNNNNGG	1 cut(s)	986
BsmAI	GTCTC	5 cut(s)	363, 753, 1063, 1132, 1145
BsmBI	CGTCTC	2 cut(s)	1132, 1145
BsmFI	GGGAC	2 cut(s)	158, 671
BsnI	GGCC	5 cut(s)	9, 491, 720, 791, 1055
Bso31I	GGTCTC	1 cut(s)	1063
BsoBI	CYCGRG	2 cut(s)	511, 860
Bsp1286I	GDGCHC	2 cut(s)	761, 1049
Bsp143I	GATC	5 cut(s)	78, 399, 950, 976, 991
BspANI	GGCC	5 cut(s)	9, 491, 720, 791, 1055
BspCNI	CTCAG	3 cut(s)	708, 747, 1070
BspFNI	CGCG	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	1 cut(s)	792
BspPI	GGATC	2 cut(s)	73, 971
BspTNI	GGTCTC	1 cut(s)	1063
BsrBI	CCGCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	765
BsrFI	RCCGGY	2 cut(s)	761, 1003
BsrI	ACTGG	1 cut(s)	547
BssAI	RCCGGY	2 cut(s)	761, 1003
BssMI	GATC	5 cut(s)	78, 399, 950, 976, 991
BssNI	GRCGYC	1 cut(s)	1154
Bst4CI	ACNGT	1 cut(s)	253
BstACI	GRCGYC	1 cut(s)	1154
BstC8I	GCNNGC	5 cut(s)	67, 109, 379, 1005, 1093
BstDEI	CTNAG	4 cut(s)	422, 695, 755, 1057
BstF5I	GGATG	2 cut(s)	262, 691
BstFNI	CGCG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	1115
BstKTI	GATC	5 cut(s)	81, 402, 953, 979, 994
BstMAI	GTCTC	5 cut(s)	363, 753, 1063, 1132, 1145
BstMBI	GATC	5 cut(s)	78, 399, 950, 976, 991
BstMWI	GCNNNNNNNGC	6 cut(s)	54, 135, 374, 1061, 1088, 1119
BstSFI	CTRYAG	3 cut(s)	148, 606, 946
BstSLI	GKGCMC	1 cut(s)	1049
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	4 cut(s)	74, 113, 355, 681
BstV2I	GAAGAC	2 cut(s)	254, 1167
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuRI	GGCC	5 cut(s)	9, 491, 720, 791, 1055
BtsCI	GGATG	2 cut(s)	262, 691
BtsIMutI	CAGTG	1 cut(s)	906
Cac8I	GCNNGC	5 cut(s)	67, 109, 379, 1005, 1093
CciI	TCATGA	1 cut(s)	625
CfoI	GCGC	1 cut(s)	1115
Cfr10I	RCCGGY	2 cut(s)	761, 1003
Cfr13I	GGNCC	1 cut(s)	790
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	3 cut(s)	4, 540, 799
CviAII	CATG	1 cut(s)	626
CviQI	GTAC	3 cut(s)	4, 540, 799
DdeI	CTNAG	4 cut(s)	422, 695, 755, 1057
DpnI	GATC	5 cut(s)	80, 401, 952, 978, 993
DpnII	GATC	5 cut(s)	78, 399, 950, 976, 991
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
EciI	GGCGGA	2 cut(s)	216, 917
Eco147I	AGGCCT	1 cut(s)	1055
Eco31I	GGTCTC	1 cut(s)	1063
Eco57I	CTGAAG	2 cut(s)	723, 1104
Eco88I	CYCGRG	2 cut(s)	511, 860
Esp3I	CGTCTC	2 cut(s)	1132, 1145
FaeI	CATG	1 cut(s)	629
FalI	AAGNNNNNCTT	2 cut(s)	801, 833
FaqI	GGGAC	2 cut(s)	158, 671
FatI	CATG	1 cut(s)	625
FauI	CCCGC	2 cut(s)	92, 184
Fnu4HI	GCNGC	8 cut(s)	63, 70, 88, 127, 199, 213, 369, 670
FokI	GGATG	2 cut(s)	269, 698
Fsp4HI	GCNGC	8 cut(s)	63, 70, 88, 127, 199, 213, 369, 670
FspBI	CTAG	5 cut(s)	11, 482, 722, 854, 1188
GlaI	GCGC	1 cut(s)	1114
GluI	GCNGC	8 cut(s)	63, 70, 88, 127, 199, 213, 369, 670
HaeIII	GGCC	5 cut(s)	9, 491, 720, 791, 1055
HapII	CCGG	2 cut(s)	762, 1004
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	1115
Hin1I	GRCGYC	1 cut(s)	1154
Hin1II	CATG	1 cut(s)	629
Hin6I	GCGC	1 cut(s)	1113
HinP1I	GCGC	1 cut(s)	1113
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HindIII	AAGCTT	2 cut(s)	165, 424
HinfI	GANTC	4 cut(s)	312, 691, 917, 1172
HpaII	CCGG	2 cut(s)	762, 1004
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	3 cut(s)	297, 967, 1047
Hpy188I	TCNGA	7 cut(s)	163, 404, 599, 742, 756, 848, 1171
Hpy188III	TCNNGA	7 cut(s)	119, 513, 626, 683, 860, 862, 995
Hpy8I	GTNNAC	3 cut(s)	297, 967, 1047
Hpy99I	CGWCG	2 cut(s)	125, 194
HpyAV	CCTTC	7 cut(s)	190, 280, 300, 481, 521, 623, 901
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	4 cut(s)	189, 834, 969, 1154
HpyCH4V	TGCA	5 cut(s)	377, 397, 414, 710, 1047
HpyF10VI	GCNNNNNNNGC	6 cut(s)	54, 135, 374, 1061, 1088, 1119
HpyF3I	CTNAG	4 cut(s)	422, 695, 755, 1057
HpySE526I	ACGT	4 cut(s)	189, 834, 969, 1154
Hsp92I	GRCGYC	1 cut(s)	1154
Hsp92II	CATG	1 cut(s)	629
HspAI	GCGC	1 cut(s)	1113
KroI	GCCGGC	1 cut(s)	1003
KroNI	GCCGGC	1 cut(s)	1005
Kzo9I	GATC	5 cut(s)	78, 399, 950, 976, 991
LmnI	GCTCC	2 cut(s)	335, 1100
Lsp1109I	GCAGC	4 cut(s)	74, 113, 355, 681
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	5 cut(s)	11, 482, 722, 854, 1188
MaeII	ACGT	4 cut(s)	189, 834, 969, 1154
MalI	GATC	5 cut(s)	80, 401, 952, 978, 993
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	5 cut(s)	78, 399, 950, 976, 991
MboII	GAAGA	6 cut(s)	259, 614, 671, 1019, 1097, 1167
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	2 cut(s)	761, 1049
MluCI	AATT	3 cut(s)	324, 705, 1032
MlyI	GAGTC	1 cut(s)	1181
MmeI	TCCRAC	1 cut(s)	577
MroNI	GCCGGC	1 cut(s)	1003
MseI	TTAA	3 cut(s)	222, 504, 1139
MspA1I	CMGCKG	2 cut(s)	87, 605
MspI	CCGG	2 cut(s)	762, 1004
MunI	CAATTG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	6 cut(s)	54, 135, 374, 1061, 1088, 1119
NaeI	GCCGGC	1 cut(s)	1005
NdeII	GATC	5 cut(s)	78, 399, 950, 976, 991
NgoMIV	GCCGGC	1 cut(s)	1003
NlaIII	CATG	1 cut(s)	629
NlaIV	GGNNCC	1 cut(s)	792
PaeR7I	CTCGAG	2 cut(s)	511, 860
PagI	TCATGA	1 cut(s)	625
PceI	AGGCCT	1 cut(s)	1055
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdiI	GCCGGC	1 cut(s)	1005
PfeI	GAWTC	3 cut(s)	312, 691, 917
PflFI	GACNNNGTC	1 cut(s)	188
PkrI	GCNGC	8 cut(s)	64, 71, 89, 128, 200, 214, 370, 671
PleI	GAGTC	1 cut(s)	1180
PpsI	GAGTC	1 cut(s)	1180
PspN4I	GGNNCC	1 cut(s)	792
PspPI	GGNCC	1 cut(s)	790
PsrI	GAACNNNNNNTAC	2 cut(s)	1008, 1040
PsuI	RGATCY	1 cut(s)	78
PsyI	GACNNNGTC	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	3 cut(s)	5, 541, 800
RsaNI	GTAC	3 cut(s)	4, 540, 799
SaqAI	TTAA	3 cut(s)	222, 504, 1139
SatI	GCNGC	8 cut(s)	63, 70, 88, 127, 199, 213, 369, 670
Sau3AI	GATC	5 cut(s)	78, 399, 950, 976, 991
Sau96I	GGNCC	1 cut(s)	790
SchI	GAGTC	1 cut(s)	1181
SduI	GDGCHC	2 cut(s)	761, 1049
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	3 cut(s)	148, 606, 946
Sfr274I	CTCGAG	2 cut(s)	511, 860
SlaI	CTCGAG	2 cut(s)	511, 860
SmlI	CTYRAG	3 cut(s)	460, 511, 860
SmoI	CTYRAG	3 cut(s)	460, 511, 860
Sse9I	AATT	3 cut(s)	324, 705, 1032
SseBI	AGGCCT	1 cut(s)	1055
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	5 cut(s)	11, 482, 722, 854, 1188
StuI	AGGCCT	1 cut(s)	1055
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	4 cut(s)	192, 837, 972, 1157
TaqI	TCGA	4 cut(s)	120, 183, 512, 861
TasI	AATT	3 cut(s)	324, 705, 1032
TauI	GCSGC	4 cut(s)	65, 72, 201, 215
TfiI	GAWTC	3 cut(s)	312, 691, 917
Tru1I	TTAA	3 cut(s)	222, 504, 1139
Tru9I	TTAA	3 cut(s)	222, 504, 1139
TscAI	CASTG	1 cut(s)	913
TseI	GCWGC	4 cut(s)	87, 126, 368, 669
TspDTI	ATGAA	4 cut(s)	489, 567, 614, 642
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	913
Tth111I	GACNNNGTC	1 cut(s)	188
VneI	GTGCAC	1 cut(s)	1045
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1189
XhoI	CTCGAG	2 cut(s)	511, 860
XspI	CTAG	5 cut(s)	11, 482, 722, 854, 1188
ZraI	GACGTC	1 cut(s)	1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.