Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001832

Physical Location & Seq

Genomic Coordinates Forward (+)

3513202 .. 3515169

Gene Structure 1968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46460

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCTGTCTCTCTTTGCTGCTTATGCAGGCTATACAAAACTGGTGCAGATCAGAAAAGAATGCAGTAATCTAGGATTGGTGTCAATAAGCATTAGCAAGTATTCTAGCTTGAATGTCAAGTATGAAAAACTAGAGAAGGCCACAGATTACTTTAACACCTCAAGAAAAATTGGGGAAGGGGGAGGTGGTACTGTGTTCAAGGGGCCTCTTCCGAGTGGCAAAACCGTAGCTGTGAAGAGATTGTTCTACAATACCAGGAAATGGGTAGATGAGTTCTTCAATGAGGTGAATTTGATCAGTGGAATTCAGCACAAGCACCTAGTGAAGCTTTTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTGCTGGTGTATGAATATGTGCCTAACAGGAGCCTCGATCAATTCCTTTTCGATAAGAACAATGATCAGTTTCTTAACTGGAAGCAGCGGTTTGATATTATTGTCGGAACAGCTGAAGGGATTGCATATCTTCATGAAGGCTCTGAAGTAAGAATAATCCACAGGGACATAAAAAGCAGCAATGTTCTTCTGGATGAGAATCTTAGCCCAAAGATCGCAGACTTTGGCCTTGCTCGGTGTTTTGCTTCCAACAAGTCTCATCTTAGCACCGGCATTGCTGGAACACTAGGTTATATGGCCCCAGAGTATCTTGTTCAAGGGCAACTTACAGAGAAAGCAGACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

235

Amino Acids

26.3

Weight (kDa)

8.61

Isoelectric Point (pI)

25.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	51 - 234	3.1e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	53 - 234	1e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40380 AT5G40380 AT5G40380
fragaria_vesca	FvH4_4g26070 FvH4_5g05520 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060
malus_domestica	MD14G1177300.v1.1 MD17G1031100.v1.1
prunus_persica	Prupe.3G288600_v2.0.a1 Prupe.5G171200_v2.0.a1
pyrus_communis	pycom14g14810 pycom17g02850
rosa_chinensis	RchiOBHm_Chr2g0089301 RchiOBHm_Chr2g0172611 RchiOBHm_Chr7g0193291
rosa_laevigata	RLG00000004281 RLG00000022120 RLG00000022121 RLG00000022125
rosa_multiflora	Rmu_co8025498.1_g000001 Rmu_sc0017093.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079690 Rroxscaffold_2G00079700 Rroxscaffold_3G00262230
rosa_rugosa	Rorug01G0488900 Rorug02G0246100 Rorug02G0560300 Rorug02G0560400 Rorug07G0008700
rosa_samantha	Rh2AG636700 Rh2AG636900 Rh2BG650100 Rh2BG650300 Rh2CG616800 Rh2CG616900 Rh2DG664300 Rh2DG664400 Rh7BG135300 Rh7CG138300 Rh7DG136300
rosa_wichuraiana	Rw2G052660 Rw2G052670 Rw7G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	261
AciI	CCGC	1 cut(s)	448
AcsI	RAATTY	2 cut(s)	289, 303
AcuI	CTGAAG	2 cut(s)	495, 525
AdeI	CACNNNGTG	1 cut(s)	322
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	5 cut(s)	112, 199, 280, 347, 677
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	4 cut(s)	108, 230, 328, 473
AluI	AGCT	4 cut(s)	108, 230, 328, 473
Alw26I	GTCTC	2 cut(s)	12, 621
AoxI	GGCC	5 cut(s)	138, 203, 349, 586, 657
ApeKI	GCWGC	3 cut(s)	17, 445, 537
ApoI	RAATTY	2 cut(s)	289, 303
AspS9I	GGNCC	3 cut(s)	203, 350, 658
AsuHPI	GGTGA	1 cut(s)	298
BbvI	GCAGC	3 cut(s)	4, 457, 549
BciT130I	CCWGG	1 cut(s)	256
BclI	TGATCA	2 cut(s)	294, 424
BcoDI	GTCTC	2 cut(s)	12, 621
BfaI	CTAG	5 cut(s)	71, 105, 131, 320, 647
BisI	GCNGC	3 cut(s)	18, 446, 538
BlsI	GCNGC	3 cut(s)	19, 447, 539
Bme1390I	CCNGG	1 cut(s)	256
BmgT120I	GGNCC	3 cut(s)	203, 350, 658
BmiI	GGNNCC	3 cut(s)	204, 392, 660
BmrFI	CCNGG	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	558
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse118I	RCCGGY	1 cut(s)	629
Bse1I	ACTGG	2 cut(s)	45, 443
Bse3DI	GCAATG	2 cut(s)	547, 633
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	559
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMI	GCAATG	2 cut(s)	547, 633
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	2 cut(s)	45, 443
BseXI	GCAGC	3 cut(s)	4, 457, 549
BsgI	GTGCAG	1 cut(s)	65
BshFI	GGCC	5 cut(s)	140, 205, 351, 588, 659
BsiSI	CCGG	1 cut(s)	630
BslFI	GGGAC	1 cut(s)	539
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	2 cut(s)	12, 621
BsmFI	GGGAC	1 cut(s)	539
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	5 cut(s)	140, 205, 351, 588, 659
Bsp143I	GATC	5 cut(s)	48, 294, 397, 424, 573
BspACI	CCGC	1 cut(s)	448
BspANI	GGCC	5 cut(s)	140, 205, 351, 588, 659
BspCNI	CTCAG	1 cut(s)	346
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	3 cut(s)	204, 392, 660
BsrDI	GCAATG	2 cut(s)	547, 633
BsrFI	RCCGGY	1 cut(s)	629
BsrI	ACTGG	2 cut(s)	45, 443
BssAI	RCCGGY	1 cut(s)	629
BssMI	GATC	5 cut(s)	48, 294, 397, 424, 573
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	193, 226
Bst6I	CTCTTC	2 cut(s)	213, 230
BstC8I	GCNNGC	2 cut(s)	28, 362
BstDEI	CTNAG	3 cut(s)	354, 563, 623
BstF5I	GGATG	1 cut(s)	559
BstKTI	GATC	5 cut(s)	51, 297, 400, 427, 576
BstMAI	GTCTC	2 cut(s)	12, 621
BstMBI	GATC	5 cut(s)	48, 294, 397, 424, 573
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 348, 357
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	254
BstV1I	GCAGC	3 cut(s)	4, 457, 549
BsuRI	GGCC	5 cut(s)	140, 205, 351, 588, 659
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	2 cut(s)	28, 362
CciI	TCATGA	1 cut(s)	493
Cfr10I	RCCGGY	1 cut(s)	629
Cfr13I	GGNCC	3 cut(s)	203, 350, 658
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	1 cut(s)	494
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	3 cut(s)	354, 563, 623
DpnI	GATC	5 cut(s)	50, 296, 399, 426, 575
DpnII	GATC	5 cut(s)	48, 294, 397, 424, 573
DraIII	CACNNNGTG	1 cut(s)	322
Eam1104I	CTCTTC	2 cut(s)	213, 230
EarI	CTCTTC	2 cut(s)	213, 230
Eco57I	CTGAAG	2 cut(s)	495, 525
EcoO109I	RGGNCCY	2 cut(s)	203, 350
EcoRI	GAATTC	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	254
FaeI	CATG	1 cut(s)	497
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FaqI	GGGAC	1 cut(s)	539
FatI	CATG	1 cut(s)	493
FbaI	TGATCA	2 cut(s)	294, 424
Fnu4HI	GCNGC	3 cut(s)	18, 446, 538
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	3 cut(s)	18, 446, 538
FspBI	CTAG	5 cut(s)	71, 105, 131, 320, 647
GluI	GCNGC	3 cut(s)	18, 446, 538
HaeIII	GGCC	5 cut(s)	140, 205, 351, 588, 659
HapII	CCGG	1 cut(s)	630
Hin1II	CATG	1 cut(s)	497
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	1 cut(s)	559
HpaII	CCGG	1 cut(s)	630
HphI	GGTGA	1 cut(s)	298
Hpy188I	TCNGA	4 cut(s)	53, 213, 467, 505
Hpy188III	TCNNGA	3 cut(s)	162, 494, 551
HpyAV	CCTTC	5 cut(s)	130, 170, 341, 470, 491
HpyCH4III	ACNGT	2 cut(s)	193, 226
HpyCH4V	TGCA	4 cut(s)	26, 46, 63, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 348, 357
HpyF3I	CTNAG	3 cut(s)	354, 563, 623
Hsp92II	CATG	1 cut(s)	497
Ksp22I	TGATCA	2 cut(s)	294, 424
Kzo9I	GATC	5 cut(s)	48, 294, 397, 424, 573
LmnI	GCTCC	1 cut(s)	390
Lsp1109I	GCAGC	3 cut(s)	4, 457, 549
MaeI	CTAG	5 cut(s)	71, 105, 131, 320, 647
MalI	GATC	5 cut(s)	50, 296, 399, 426, 575
MboI	GATC	5 cut(s)	48, 294, 397, 424, 573
MboII	GAAGA	5 cut(s)	200, 247, 268, 482, 539
MluCI	AATT	4 cut(s)	168, 289, 303, 401
MmeI	TCCRAC	2 cut(s)	445, 633
MnlI	CCTC	5 cut(s)	169, 176, 216, 277, 404
MseI	TTAA	2 cut(s)	153, 435
MspA1I	CMGCKG	2 cut(s)	448, 473
MspI	CCGG	1 cut(s)	630
MspR9I	CCNGG	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	3 cut(s)	23, 348, 357
NdeII	GATC	5 cut(s)	48, 294, 397, 424, 573
NlaIII	CATG	1 cut(s)	497
NlaIV	GGNNCC	3 cut(s)	204, 392, 660
PagI	TCATGA	1 cut(s)	493
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	559
PflMI	CCANNNNNTGG	1 cut(s)	261
PkrI	GCNGC	3 cut(s)	19, 447, 539
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	3 cut(s)	204, 392, 660
PspPI	GGNCC	3 cut(s)	203, 350, 658
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	153, 435
SatI	GCNGC	3 cut(s)	18, 446, 538
Sau3AI	GATC	5 cut(s)	48, 294, 397, 424, 573
Sau96I	GGNCC	3 cut(s)	203, 350, 658
ScrFI	CCNGG	1 cut(s)	256
SetI	ASST	9 cut(s)	110, 161, 187, 232, 288, 321, 330, 475, 652
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	4 cut(s)	168, 289, 303, 401
SsiI	CCGC	1 cut(s)	448
SspMI	CTAG	5 cut(s)	71, 105, 131, 320, 647
StyD4I	CCNGG	1 cut(s)	254
TaaI	ACNGT	2 cut(s)	193, 226
TaqI	TCGA	2 cut(s)	396, 411
TasI	AATT	4 cut(s)	168, 289, 303, 401
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	2 cut(s)	153, 435
Tru9I	TTAA	2 cut(s)	153, 435
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	3 cut(s)	17, 445, 537
TspDTI	ATGAA	4 cut(s)	138, 387, 482, 510
TspRI	CASTG	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	261
XapI	RAATTY	2 cut(s)	289, 303
XspI	CTAG	5 cut(s)	71, 105, 131, 320, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.