Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001832

Physical Location & Seq

Genomic Coordinates Reverse (-)

2674578 .. 2675081

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00079700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCTTGTAGAGGATACATTGCTCCTGAATACCTAGCTCATGGACGTTTAACCGAAAAGGTTGATGTGTATAGCTTTGGGATTCTTTTACTCGAAATCGTCAGTGGAGTTCGGAACAACAATGTTCAGCCCGAAATTCCTCTGCAAACTTTAGTCACTGATGTGTGGCACCATGTCCAAAATAATACGATTTCTCGAATTATCGATAAGAGTATGAAGATTGAAGACATTGAAGAAATTAAAAGAGTTGTTCAGGTGGGTCTGTTGTGCACTCAAGAATCACCAGAGTTACGTCCTACCATGACATCAGTAATTCGAACGCTTATACGAAGAGACTTGGCATTGCCAGCGCCATCAAAGCCACCTTTCCTTGATATTGTAAATATGAAACATCATCATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

134

Amino Acids

15.31

Weight (kDa)

7.06

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 106	2.6e-07	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 108	4.1e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40380 AT5G40380 AT5G40380
fragaria_vesca	FvH4_4g26070 FvH4_5g05520 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060
malus_domestica	MD14G1177300.v1.1 MD17G1031100.v1.1
prunus_persica	Prupe.3G288600_v2.0.a1 Prupe.5G171200_v2.0.a1
pyrus_communis	pycom14g14810 pycom17g02850
rosa_chinensis	RchiOBHm_Chr2g0089301 RchiOBHm_Chr2g0172611 RchiOBHm_Chr7g0193291
rosa_laevigata	RLG00000004281 RLG00000022120 RLG00000022121 RLG00000022125
rosa_multiflora	Rmu_co8025498.1_g000001 Rmu_sc0017093.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079690 Rroxscaffold_2G00079700 Rroxscaffold_3G00262230
rosa_rugosa	Rorug01G0488900 Rorug02G0246100 Rorug02G0560300 Rorug02G0560400 Rorug07G0008700
rosa_samantha	Rh2AG636700 Rh2AG636900 Rh2BG650100 Rh2BG650300 Rh2CG616800 Rh2CG616900 Rh2DG664300 Rh2DG664400 Rh7BG135300 Rh7CG138300 Rh7DG136300
rosa_wichuraiana	Rw2G052660 Rw2G052670 Rw7G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	224, 233
AleI	CACNNNNGTG	1 cut(s)	161
AluBI	AGCT	2 cut(s)	38, 75
AluI	AGCT	2 cut(s)	38, 75
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	327
Alw44I	GTGCAC	1 cut(s)	268
ApaLI	GTGCAC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	352
AsuHPI	GGTGA	1 cut(s)	273
AsuII	TTCGAA	1 cut(s)	316
BaeGI	GKGCMC	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	272
BccI	CCATC	1 cut(s)	361
BciVI	GTATCC	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	35
BfoI	RGCGCY	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	258
Bsa29I	ATCGAT	1 cut(s)	204
Bse3DI	GCAATG	2 cut(s)	18, 341
BseCI	ATCGAT	1 cut(s)	204
BseMI	GCAATG	2 cut(s)	18, 341
BseSI	GKGCMC	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	168
BshVI	ATCGAT	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	327
Bsp119I	TTCGAA	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	272
BspDI	ATCGAT	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	170
BspT104I	TTCGAA	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	168
BsrDI	GCAATG	2 cut(s)	18, 341
Bst6I	CTCTTC	1 cut(s)	325
BstBI	TTCGAA	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	348
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	352
BstMAI	GTCTC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 358
BstSLI	GKGCMC	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	8
BsuTUI	ATCGAT	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	109, 156
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	352
ClaI	ATCGAT	1 cut(s)	204
CviAII	CATG	3 cut(s)	41, 173, 301
CviJI	RGCY	5 cut(s)	5, 38, 75, 130, 361
CviKI_1	RGCY	5 cut(s)	5, 38, 75, 130, 361
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
FaeI	CATG	3 cut(s)	44, 176, 304
FaiI	YATR	7 cut(s)	42, 72, 174, 215, 302, 326, 386
FatI	CATG	3 cut(s)	40, 172, 300
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	351
HaeII	RGCGCY	1 cut(s)	353
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	3 cut(s)	44, 176, 304
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	2 cut(s)	82, 278
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	3 cut(s)	26, 195, 275
Hpy8I	GTNNAC	1 cut(s)	270
HpyCH4IV	ACGT	2 cut(s)	46, 292
HpyCH4V	TGCA	2 cut(s)	145, 270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 358
HpySE526I	ACGT	2 cut(s)	46, 292
Hsp92II	CATG	3 cut(s)	44, 176, 304
HspAI	GCGC	1 cut(s)	350
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	4 cut(s)	39, 239, 297, 360
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	2 cut(s)	46, 292
MaeIII	GTNAC	2 cut(s)	154, 288
MboII	GAAGA	4 cut(s)	229, 236, 245, 342
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	4 cut(s)	135, 198, 237, 312
MnlI	CCTC	2 cut(s)	5, 150
MseI	TTAA	2 cut(s)	50, 240
MslI	CAYNNNNRTG	1 cut(s)	161
MwoI	GCNNNNNNNGC	2 cut(s)	347, 358
NlaIII	CATG	3 cut(s)	44, 176, 304
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	154
NspV	TTCGAA	1 cut(s)	316
OliI	CACNNNNGTG	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	82, 278
PspN4I	GGNNCC	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	50, 240
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	8 cut(s)	36, 40, 49, 63, 77, 258, 295, 367
SfuI	TTCGAA	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
Sse9I	AATT	4 cut(s)	135, 198, 237, 312
SspMI	CTAG	1 cut(s)	35
TaiI	ACGT	2 cut(s)	49, 295
TaqI	TCGA	4 cut(s)	93, 196, 204, 316
TasI	AATT	4 cut(s)	135, 198, 237, 312
TfiI	GAWTC	2 cut(s)	82, 278
Tru1I	TTAA	2 cut(s)	50, 240
Tru9I	TTAA	2 cut(s)	50, 240
TscAI	CASTG	2 cut(s)	109, 163
TseFI	GTSAC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	230, 401
TspRI	CASTG	2 cut(s)	109, 163
VneI	GTGCAC	1 cut(s)	268
XapI	RAATTY	1 cut(s)	135
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.