AT5G40380

(RECEPTOR-like protein kinase) 42

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
16151522 .. 16155215
3694 bp
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UTR
Exon/CDS
Intron
AT5G40380.3

Sequence Viewer

Length: 1956 bp
ATGCGTTGCCTCACAAAAACAAGATCGTTTCATTATGTCATCATTTTTTATTCCTTCTTCTTTTTACCGTTCTTGTCGTCCTCCTCCGACGATCAAAGAACCACCGTCTCCGGTCTTTTCTGTGGCGGACGTAGCAAATCCTCCGCAGATCCAAACTACATCCCAACTTTCGTCGAAGATATGCATTCACTATCTCTAAAACTAACTACACGCCGTTTCGCAACTGAATCATTAAACTCCACTACATCTATCTACGCTCTGATCCAATGCCACGACGATCTCTCACCGTCCGATTGTCAGCTCTGTTACGCGATTGCACGCACCCGCATCCCTCGTTGTCTCCCTTCTTCCTCCGCAAGAATCTTCCTCGACGGTTGTTTCCTCCGTTACGAAACTTACGAGTTTTACGATGAATCAGTCTCCGATGCGTCGGATAGTTTTTCTTGTAGCAACGACACCGTTTTGGATCCTCGGTTCGGGTTTCAAGTTTCGGAAACTGCGGCGAGAGTCGCGGTTAGAAAAGGAGGGTTTGGAGTCGCCGGAGAGAATGGAGTACACGCTCTTGCTCAGTGTTGGGAGAGTTTGGGGAAAGAAGATTGTAGGGTTTGTTTGGAGAAAGCTGTTAAAGAAGTGAAACGCTGCGTTTCGAGGAGAGAAGGAAGAGCTATGAATACAGGATGTTATCTTAGATACTCTGATCATAAATTCTATAATGGTGATGGACATCATAAATTTCATGTGCTTTTTAACAAAGGAGTCATCGTTGCTATTGTCTTGACAACGTCAGCATTCGTCATGCTCATCCTCTTGGCAACGTATGTCATTATGACAAAAGTATCAAAGACTAAACAAGAAAAAAGAAACTTAGGTTTGGTTTCGAGAAAATTCAACAACTCAAAGACGAAGTTCAAGTACGAGACTCTAGAGAAGGCAACAGATTACTTCAGTCACAAGAAAATGCTAGGGCAAGGAGGAAATGGCACCGTTTTCTTAGGAATCCTTCCAAATGGTAAGAACGTGGCTGTGAAAAGATTAGTGTTTAACACAAGAGACTGGGTAGAAGAATTCTTCAACGAAGTGAATCTAATTAGTGGAATCCAACATAAGAACCTCGTCAAGCTTCTTGGTTGTAGCATTGAAGGACCGGAGAGTCTCTTGGTCTATGAGTACGTGCCTAACAAAAGCCTCGACCAATTTCTCTTTGATGAGAGTCAAAGCAAGGTCTTAAACTGGAGCCAGAGGCTAAACATAATCCTTGGAACAGCGGAGGGACTGGCTTACCTACACGGTGGATCTCCCGTGAGGATTATTCATCGTGACATCAAAACCAGTAATGTTCTTCTAGACGACCAGCTCAATCCTAAGATCGCTGATTTCGGTTTGGCTCGATGTTTTGGTCTGGACAAAACTCATCTTAGCACCGGCATCGCAGGAACTCTAGGTTACATGGCTCCAGAGTATGTTGTTAGAGGACAGTTAACGGAGAAAGCAGACGTTTATAGCTTCGGAGTTCTTGTTCTCGAGATTGCTTGTGGAACAAGAATCAATGCTTTCGTACCAGAGACAGGTCACCTCCTACAAAGAGTCTGGAACCTTTATACACTGAATAGACTGGTCGAAGCTCTTGACCCATGTCTAAAAGATGAGTTTCTTCAAGTGCAAGGCAGCGAAGCTGAAGCTTGTAAAGTTCTTCGTGTGGGATTGTTATGCACACAAGCTTCTCCGTCGCTAAGACCGTCGATGGAAGAAGTGATCCGTATGCTAACCGAGAGAGATTACCCGATTCCATCTCCAACCAGTCCTCCCTTCTTGAGGGTTAGCTCTCTAACTACAGACCTAGAGGGCAGTAGTACTATATCTCATAGCACCAATAGTACTACGACGTTTAACACGATGGTCAAAACCGATCAAGCTTCTTATACTTCTTCAGAATCTTCTACTACTCGTACAATCTAA

Protein Analysis

651

Amino Acids

72.71

Weight (kDa)

8.39

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 56 - 133 8.3e-13 Salt stress response/antifungal
Stress-antifung PF01657 176 - 233 6.5e-11 Salt stress response/antifungal
Pkinase PF00069 316 - 469 2.8e-29 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 317 - 465 2.4e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1149
AccB1I GGYRCC 1 cut(s) 980
AccII CGCG 2 cut(s) 311, 512
AciI CCGC 7 cut(s) 126, 144, 325, 354, 500, 512, 1265
AclWI GGATC 6 cut(s) 143, 256, 461, 474, 1300, 1747
AcsI RAATTY 4 cut(s) 704, 731, 884, 1064
AcuI CTGAAG 3 cut(s) 928, 1695, 1911
AfaI GTAC 7 cut(s) 555, 914, 1169, 1557, 1852, 1876, 1948
AfiI CCNNNNNNNGG 3 cut(s) 476, 1565, 1812
AgsI TTSAA 6 cut(s) 485, 889, 910, 1072, 1139, 1655
AloI GAACNNNNNNTCC 4 cut(s) 458, 490, 1500, 1532
Alw26I GTCTC 7 cut(s) 112, 344, 424, 911, 1044, 1157, 1556
AlwI GGATC 6 cut(s) 143, 256, 461, 474, 1300, 1747
Ama87I CYCGRG 1 cut(s) 1520
ApeKI GCWGC 2 cut(s) 639, 1665
ApoI RAATTY 4 cut(s) 704, 731, 884, 1064
AspS9I GGNCC 1 cut(s) 1142
AsuHPI GGTGA 3 cut(s) 276, 728, 1562
AvaI CYCGRG 1 cut(s) 1520
AvaII GGWCC 1 cut(s) 1142
BaeI ACNNNNGTAYC 2 cut(s) 819, 852
BamHI GGATCC 1 cut(s) 466
BanI GGYRCC 1 cut(s) 980
BarI GAAGNNNNNNTAC 2 cut(s) 896, 928
BbvI GCAGC 2 cut(s) 626, 1677
BccI CCATC 4 cut(s) 713, 1735, 1795, 1888
BceAI ACGGC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 1408, 1442
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 7 cut(s) 112, 344, 424, 911, 1044, 1157, 1556
BfaI CTAG 5 cut(s) 923, 962, 1343, 1439, 1838
BfmI CTRYAG 1 cut(s) 1830
BisI GCNGC 3 cut(s) 501, 640, 1666
BlsI GCNGC 3 cut(s) 502, 641, 1667
BmcAI AGTACT 2 cut(s) 1852, 1876
Bme18I GGWCC 1 cut(s) 1142
BmeT110I CYCGRG 1 cut(s) 1520
BmgT120I GGNCC 1 cut(s) 1142
BmiI GGNNCC 5 cut(s) 468, 982, 1235, 1452, 1592
BmrI ACTGGG 1 cut(s) 1063
BmsI GCATC 3 cut(s) 336, 415, 1434
BmuI ACTGGG 1 cut(s) 1063
BoxI GACNNNNGTC 1 cut(s) 1632
BpmI CTGGAG 2 cut(s) 1252, 1437
BpuEI CTTGAG 1 cut(s) 1831
BsaAI YACGTR 1 cut(s) 1171
BsaBI GATNNNNATC 1 cut(s) 723
BsaJI CCNNGG 2 cut(s) 470, 1255
BsaWI WCCGGW 2 cut(s) 110, 1144
BsaXI ACNNNNNCTCC 6 cut(s) 747, 777, 1500, 1530, 1786, 1816
Bsc4I CCNNNNNNNGG 3 cut(s) 476, 1565, 1812
Bse118I RCCGGY 1 cut(s) 1421
Bse1I ACTGG 6 cut(s) 1058, 1235, 1278, 1329, 1617, 1797
Bse8I GATNNNNATC 1 cut(s) 723
BseDI CCNNGG 2 cut(s) 470, 1255
BseGI GGATG 4 cut(s) 159, 327, 683, 801
BseJI GATNNNNATC 1 cut(s) 723
BseLI CCNNNNNNNGG 3 cut(s) 476, 1565, 1812
BseMII CTCAG 1 cut(s) 581
BseNI ACTGG 6 cut(s) 1058, 1235, 1278, 1329, 1617, 1797
BseRI GAGGAG 2 cut(s) 73, 664
BseXI GCAGC 2 cut(s) 626, 1677
Bsh1236I CGCG 2 cut(s) 311, 512
BshNI GGYRCC 1 cut(s) 980
BsiHKCI CYCGRG 1 cut(s) 1520
BsiSI CCGG 4 cut(s) 111, 540, 1145, 1422
BslFI GGGAC 1 cut(s) 1284
BslI CCNNNNNNNGG 3 cut(s) 476, 1565, 1812
BsmAI GTCTC 7 cut(s) 112, 344, 424, 911, 1044, 1157, 1556
BsmBI CGTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 1284
BsmI GAATGC 2 cut(s) 184, 788
BsoBI CYCGRG 1 cut(s) 1520
BspACI CCGC 7 cut(s) 126, 144, 325, 354, 500, 512, 1265
BspCNI CTCAG 1 cut(s) 580
BspFNI CGCG 2 cut(s) 311, 512
BspLI GGNNCC 5 cut(s) 468, 982, 1235, 1452, 1592
BspPI GGATC 6 cut(s) 143, 256, 461, 474, 1300, 1747
BspQI GCTCTTC 1 cut(s) 655
BspT107I GGYRCC 1 cut(s) 980
BsrFI RCCGGY 1 cut(s) 1421
BsrI ACTGG 6 cut(s) 1058, 1235, 1278, 1329, 1617, 1797
BssAI RCCGGY 1 cut(s) 1421
BssECI CCNNGG 2 cut(s) 470, 1255
BssT1I CCWWGG 1 cut(s) 1255
Bst4CI ACNGT 9 cut(s) 69, 106, 288, 374, 460, 985, 1289, 1476, 1737
Bst6I CTCTTC 1 cut(s) 655
BstBAI YACGTR 1 cut(s) 1171
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 7 cut(s) 567, 686, 865, 991, 1362, 1415, 1730
BstEII GGTNACC 1 cut(s) 1568
BstENI CCTNNNNNAGG 1 cut(s) 1810
BstF5I GGATG 4 cut(s) 159, 327, 683, 801
BstFNI CGCG 2 cut(s) 311, 512
BstMAI GTCTC 7 cut(s) 112, 344, 424, 911, 1044, 1157, 1556
BstMWI GCNNNNNNNGC 2 cut(s) 132, 509
BstPAI GACNNNNGTC 1 cut(s) 1632
BstPI GGTNACC 1 cut(s) 1568
BstSFI CTRYAG 1 cut(s) 1830
BstUI CGCG 2 cut(s) 311, 512
BstV1I GCAGC 2 cut(s) 626, 1677
BstX2I RGATCY 3 cut(s) 148, 466, 1292
BstYI RGATCY 3 cut(s) 148, 466, 1292
BtgZI GCGATG 1 cut(s) 1411
BtsCI GGATG 4 cut(s) 159, 327, 683, 801
BtsIMutI CAGTG 2 cut(s) 575, 1601
Cac8I GCNNGC 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 1421
Cfr13I GGNCC 1 cut(s) 1142
CseI GACGC 1 cut(s) 417
Csp6I GTAC 7 cut(s) 554, 913, 1168, 1556, 1851, 1875, 1947
CviAII CATG 4 cut(s) 737, 796, 1447, 1632
CviQI GTAC 7 cut(s) 554, 913, 1168, 1556, 1851, 1875, 1947
DdeI CTNAG 7 cut(s) 567, 686, 865, 991, 1362, 1415, 1730
DrdI GACNNNNNNGTC 1 cut(s) 1149
DseDI GACNNNNNNGTC 1 cut(s) 1149
Eam1104I CTCTTC 1 cut(s) 655
EarI CTCTTC 1 cut(s) 655
EciI GGCGGA 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 1255
Eco47I GGWCC 1 cut(s) 1142
Eco57I CTGAAG 3 cut(s) 928, 1695, 1911
Eco88I CYCGRG 1 cut(s) 1520
Eco91I GGTNACC 1 cut(s) 1568
EcoNI CCTNNNNNAGG 1 cut(s) 1810
EcoO65I GGTNACC 1 cut(s) 1568
EcoRI GAATTC 1 cut(s) 1064
EcoT14I CCWWGG 1 cut(s) 1255
EcoT22I ATGCAT 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 1255
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 4 cut(s) 740, 799, 1450, 1635
FaqI GGGAC 1 cut(s) 1284
FatI CATG 4 cut(s) 736, 795, 1446, 1631
FauI CCCGC 1 cut(s) 332
FbaI TGATCA 1 cut(s) 697
Fnu4HI GCNGC 3 cut(s) 501, 640, 1666
FokI GGATG 4 cut(s) 146, 314, 690, 788
Fsp4HI GCNGC 3 cut(s) 501, 640, 1666
FspBI CTAG 5 cut(s) 923, 962, 1343, 1439, 1838
GluI GCNGC 3 cut(s) 501, 640, 1666
GsuI CTGGAG 2 cut(s) 1252, 1437
HapII CCGG 4 cut(s) 111, 540, 1145, 1422
HgaI GACGC 1 cut(s) 417
Hin1II CATG 4 cut(s) 740, 799, 1450, 1635
HincII GTYRAC 1 cut(s) 1479
HindII GTYRAC 1 cut(s) 1479
HindIII AAGCTT 4 cut(s) 1118, 1677, 1716, 1911
HpaI GTTAAC 1 cut(s) 1479
HpaII CCGG 4 cut(s) 111, 540, 1145, 1422
HphI GGTGA 3 cut(s) 276, 728, 1562
Hpy166II GTNNAC 2 cut(s) 556, 1479
Hpy188I TCNGA 9 cut(s) 88, 261, 292, 424, 433, 493, 697, 1508, 1930
Hpy8I GTNNAC 2 cut(s) 556, 1479
Hpy99I CGWCG 8 cut(s) 92, 176, 278, 374, 433, 1729, 1741, 1885
HpyAV CCTTC 7 cut(s) 64, 354, 650, 922, 1010, 1133, 1816
HpyCH4III ACNGT 9 cut(s) 69, 106, 288, 374, 460, 985, 1289, 1476, 1737
HpyCH4IV ACGT 7 cut(s) 130, 782, 815, 1017, 1170, 1494, 1883
HpyCH4V TGCA 4 cut(s) 184, 317, 1660, 1710
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 509
HpyF3I CTNAG 7 cut(s) 567, 686, 865, 991, 1362, 1415, 1730
HpySE526I ACGT 7 cut(s) 130, 782, 815, 1017, 1170, 1494, 1883
Hsp92II CATG 4 cut(s) 740, 799, 1450, 1635
Ksp22I TGATCA 1 cut(s) 697
KspAI GTTAAC 1 cut(s) 1479
LguI GCTCTTC 1 cut(s) 655
LmnI GCTCC 2 cut(s) 1233, 1456
Lsp1109I GCAGC 2 cut(s) 626, 1677
LweI GCATC 3 cut(s) 336, 415, 1434
MaeI CTAG 5 cut(s) 923, 962, 1343, 1439, 1838
MaeII ACGT 7 cut(s) 130, 782, 815, 1017, 1170, 1494, 1883
MaeIII GTNAC 6 cut(s) 305, 386, 947, 1316, 1442, 1568
MflI RGATCY 3 cut(s) 148, 466, 1292
MluCI AATT 6 cut(s) 704, 731, 884, 1064, 1086, 1193
MlyI GAGTC 7 cut(s) 516, 543, 765, 913, 1159, 1219, 1593
MmeI TCCRAC 4 cut(s) 111, 411, 1123, 1817
Mph1103I ATGCAT 1 cut(s) 186
MseI TTAA 7 cut(s) 233, 624, 747, 1041, 1226, 1478, 1887
MspA1I CMGCKG 1 cut(s) 1265
MspI CCGG 4 cut(s) 111, 540, 1145, 1422
Mva1269I GAATGC 2 cut(s) 184, 788
MvnI CGCG 2 cut(s) 311, 512
MwoI GCNNNNNNNGC 2 cut(s) 132, 509
NlaIII CATG 4 cut(s) 740, 799, 1450, 1635
NlaIV GGNNCC 5 cut(s) 468, 982, 1235, 1452, 1592
NmuCI GTSAC 3 cut(s) 947, 1316, 1568
NsiI ATGCAT 1 cut(s) 186
PaeR7I CTCGAG 1 cut(s) 1520
PciSI GCTCTTC 1 cut(s) 655
PcsI WCGNNNNNNNCGW 4 cut(s) 396, 405, 1733, 1889
PctI GAATGC 2 cut(s) 184, 788
PfeI GAWTC 9 cut(s) 227, 360, 413, 996, 1081, 1095, 1542, 1783, 1931
PflFI GACNNNGTC 1 cut(s) 781
PkrI GCNGC 3 cut(s) 502, 641, 1667
PleI GAGTC 7 cut(s) 515, 542, 764, 913, 1158, 1218, 1592
PpsI GAGTC 7 cut(s) 515, 542, 764, 913, 1158, 1218, 1592
Ppu21I YACGTR 1 cut(s) 1171
PshAI GACNNNNGTC 1 cut(s) 1632
PspEI GGTNACC 1 cut(s) 1568
PspN4I GGNNCC 5 cut(s) 468, 982, 1235, 1452, 1592
PspPI GGNCC 1 cut(s) 1142
PsuI RGATCY 3 cut(s) 148, 466, 1292
PsyI GACNNNGTC 1 cut(s) 781
RsaI GTAC 7 cut(s) 555, 914, 1169, 1557, 1852, 1876, 1948
RsaNI GTAC 7 cut(s) 554, 913, 1168, 1556, 1851, 1875, 1947
SapI GCTCTTC 1 cut(s) 655
SaqAI TTAA 7 cut(s) 233, 624, 747, 1041, 1226, 1478, 1887
SatI GCNGC 3 cut(s) 501, 640, 1666
Sau96I GGNCC 1 cut(s) 1142
ScaI AGTACT 2 cut(s) 1852, 1876
SchI GAGTC 7 cut(s) 516, 543, 765, 913, 1159, 1219, 1593
SfaNI GCATC 3 cut(s) 336, 415, 1434
SfcI CTRYAG 1 cut(s) 1830
Sfr274I CTCGAG 1 cut(s) 1520
SinI GGWCC 1 cut(s) 1142
SlaI CTCGAG 1 cut(s) 1520
SmlI CTYRAG 2 cut(s) 1520, 1810
SmoI CTYRAG 2 cut(s) 1520, 1810
Sse9I AATT 6 cut(s) 704, 731, 884, 1064, 1086, 1193
SsiI CCGC 7 cut(s) 126, 144, 325, 354, 500, 512, 1265
SspMI CTAG 5 cut(s) 923, 962, 1343, 1439, 1838
StyI CCWWGG 1 cut(s) 1255
TaaI ACNGT 9 cut(s) 69, 106, 288, 374, 460, 985, 1289, 1476, 1737
TaiI ACGT 7 cut(s) 133, 785, 818, 1020, 1173, 1497, 1886
TaqI TCGA 9 cut(s) 174, 369, 647, 878, 1188, 1387, 1521, 1617, 1739
TasI AATT 6 cut(s) 704, 731, 884, 1064, 1086, 1193
TatI WGTACW 3 cut(s) 553, 1850, 1874
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 9 cut(s) 227, 360, 413, 996, 1081, 1095, 1542, 1783, 1931
Tru1I TTAA 7 cut(s) 233, 624, 747, 1041, 1226, 1478, 1887
Tru9I TTAA 7 cut(s) 233, 624, 747, 1041, 1226, 1478, 1887
TscAI CASTG 2 cut(s) 575, 1608
TseFI GTSAC 3 cut(s) 947, 1316, 1568
TseI GCWGC 2 cut(s) 639, 1665
Tsp45I GTSAC 3 cut(s) 947, 1316, 1568
TspDTI ATGAA 5 cut(s) 20, 426, 683, 725, 1301
TspGWI ACGGA 4 cut(s) 374, 1496, 1713, 1745
TspRI CASTG 2 cut(s) 575, 1608
Tth111I GACNNNGTC 1 cut(s) 781
VpaK11BI GGWCC 1 cut(s) 1142
XagI CCTNNNNNAGG 1 cut(s) 1810
XapI RAATTY 4 cut(s) 704, 731, 884, 1064
XbaI TCTAGA 2 cut(s) 922, 1342
XhoI CTCGAG 1 cut(s) 1520
XspI CTAG 5 cut(s) 923, 962, 1343, 1439, 1838
ZrmI AGTACT 2 cut(s) 1852, 1876
Zsp2I ATGCAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.