Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001832

Physical Location & Seq

Genomic Coordinates Forward (+)

86170592 .. 86171481

Gene Structure 890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG636900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGAGTTTATCAGAGCTCATCACCAAACACCACTGGGGCACCCATTTCTTTAACTCCACGACCCCCATGTACGGCCTAGCGGAATGCTACAACGACCTGTCGCACACTGATTGTCTTCTCTGCTACGCCGCCAGCCGCACCGAGATCCCCCGCTGCCTCCCTTCCCTCTCCGCCCGCATCTTTCTCGACGGCTGCTTCCTCCGCTACGACAACTACAGCTTCTACTCCGAAGCTTCAGTCCCCGCAGTCGACTCCGTCGTCTGCGGCCAAGAAGAGGCGGCGGACGCGGCGGTGTTTAAGGAGAACGTTGCGGAGGTGATTGAGAGGGTTAAGAGGTCCGCGGCGGAGAATGGGGGGTTTGGGGTAGGGGAAGTGGGTGGGGAGGTGTATGCTTTGGGGCAGTGCTGGAAGACGGTGGATGGTGATGGGTGTAGGGAGTGTTTGGAGAAGGGAGGTGAGGCGGTGAGAGGGTGTGGGTTGAAGACAGAAGGCAAGGCTTTGAATGCTGGATGTTACTTGAGGTATTCGACTCGGAAGTTCTATAATGACGAGGGGGAAGCAGAGCACGAGCATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

193

Amino Acids

21.16

Weight (kDa)

4.91

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	15 - 73	1.4e-10	Salt stress response/antifungal
Stress-antifung	PF01657	89 - 178	1.3e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40380 AT5G40380 AT5G40380
fragaria_vesca	FvH4_4g26070 FvH4_5g05520 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060
malus_domestica	MD14G1177300.v1.1 MD17G1031100.v1.1
prunus_persica	Prupe.3G288600_v2.0.a1 Prupe.5G171200_v2.0.a1
pyrus_communis	pycom14g14810 pycom17g02850
rosa_chinensis	RchiOBHm_Chr2g0089301 RchiOBHm_Chr2g0172611 RchiOBHm_Chr7g0193291
rosa_laevigata	RLG00000004281 RLG00000022120 RLG00000022121 RLG00000022125
rosa_multiflora	Rmu_co8025498.1_g000001 Rmu_sc0017093.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079690 Rroxscaffold_2G00079700 Rroxscaffold_3G00262230
rosa_rugosa	Rorug01G0488900 Rorug02G0246100 Rorug02G0560300 Rorug02G0560400 Rorug07G0008700
rosa_samantha	Rh2AG636700 Rh2AG636900 Rh2BG650100 Rh2BG650300 Rh2CG616800 Rh2CG616900 Rh2DG664300 Rh2DG664400 Rh7BG135300 Rh7CG138300 Rh7DG136300
rosa_wichuraiana	Rw2G052660 Rw2G052670 Rw7G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	2 cut(s)	290, 344
AclI	AACGTT	1 cut(s)	309
AclWI	GGATC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	2 cut(s)	74, 277
AgsI	TTSAA	2 cut(s)	484, 505
AluBI	AGCT	3 cut(s)	19, 222, 236
AluI	AGCT	3 cut(s)	19, 222, 236
Alw21I	GWGCWC	2 cut(s)	21, 570
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	2 cut(s)	76, 268
ApeKI	GCWGC	2 cut(s)	156, 195
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
AspS9I	GGNCC	1 cut(s)	339
AsuHPI	GGTGA	5 cut(s)	16, 331, 437, 470, 478
AvaII	GGWCC	1 cut(s)	339
BaeGI	GKGCMC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	21
BauI	CACGAG	1 cut(s)	569
BbsI	GAAGAC	3 cut(s)	110, 419, 491
Bbv12I	GWGCWC	2 cut(s)	21, 570
BbvI	GCAGC	2 cut(s)	143, 182
BccI	CCATC	2 cut(s)	416, 422
BceAI	ACGGC	2 cut(s)	91, 208
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	217
BisI	GCNGC	8 cut(s)	132, 139, 157, 196, 268, 282, 291, 345
BlsI	GCNGC	8 cut(s)	133, 140, 158, 197, 269, 283, 292, 346
Bme18I	GGWCC	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	43
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	46
BpiI	GAAGAC	3 cut(s)	110, 419, 491
BpuEI	CTTGAG	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 277
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	2 cut(s)	427, 518
BseLI	CCNNNNNNNGG	2 cut(s)	74, 277
BseNI	ACTGG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	143, 182
Bsh1236I	CGCG	2 cut(s)	290, 344
BshFI	GGCC	2 cut(s)	78, 270
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	2 cut(s)	21, 570
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	74, 277
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	2 cut(s)	92, 511
BsnI	GGCC	2 cut(s)	78, 270
Bsp1286I	GDGCHC	3 cut(s)	21, 44, 570
Bsp143I	GATC	1 cut(s)	147
BspANI	GGCC	2 cut(s)	78, 270
BspFNI	CGCG	2 cut(s)	290, 344
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	569
Bst2BI	CACGAG	1 cut(s)	569
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	136, 178
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	427, 518
BstFNI	CGCG	2 cut(s)	290, 344
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 287, 290, 506
BstSFI	CTRYAG	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	2 cut(s)	290, 344
BstV1I	GCAGC	2 cut(s)	143, 182
BstV2I	GAAGAC	3 cut(s)	110, 419, 491
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	78, 270
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	427, 518
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	3 cut(s)	34, 108, 410
Cac8I	GCNNGC	2 cut(s)	136, 178
Cfr13I	GGNCC	1 cut(s)	339
Cfr42I	CCGCGG	1 cut(s)	345
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	2 cut(s)	70, 575
CviJI	RGCY	8 cut(s)	19, 78, 138, 195, 222, 236, 270, 500
CviKI_1	RGCY	8 cut(s)	19, 78, 138, 195, 222, 236, 270, 500
CviQI	GTAC	1 cut(s)	73
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
EciI	GGCGGA	3 cut(s)	163, 299, 362
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	339
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	2 cut(s)	73, 578
FaiI	YATR	4 cut(s)	71, 393, 546, 576
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	69, 574
FauI	CCCGC	3 cut(s)	161, 185, 253
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	8 cut(s)	132, 139, 157, 196, 268, 282, 291, 345
FokI	GGATG	2 cut(s)	434, 525
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	8 cut(s)	132, 139, 157, 196, 268, 282, 291, 345
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	8 cut(s)	132, 139, 157, 196, 268, 282, 291, 345
HaeIII	GGCC	2 cut(s)	78, 270
HgaI	GACGC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	73, 578
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	2 cut(s)	254, 532
HphI	GGTGA	5 cut(s)	16, 331, 437, 470, 478
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	16, 232, 537
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	2 cut(s)	194, 263
HpyAV	CCTTC	3 cut(s)	174, 445, 485
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	1 cut(s)	309
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 287, 290, 506
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	73, 578
KspI	CCGCGG	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	147
LpnPI	CCDG	5 cut(s)	22, 113, 148, 394, 495
Lsp1109I	GCAGC	2 cut(s)	143, 182
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	4 cut(s)	110, 287, 424, 496
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	3 cut(s)	21, 44, 570
MlyI	GAGTC	2 cut(s)	248, 526
MseI	TTAA	3 cut(s)	54, 300, 333
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	2 cut(s)	156, 344
Mva1269I	GAATGC	2 cut(s)	92, 511
MvnI	CGCG	2 cut(s)	290, 344
MwoI	GCNNNNNNNGC	4 cut(s)	204, 287, 290, 506
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	2 cut(s)	73, 578
NlaIV	GGNNCC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PctI	GAATGC	2 cut(s)	92, 511
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	8 cut(s)	133, 140, 158, 197, 269, 283, 292, 346
PleI	GAGTC	2 cut(s)	248, 526
PpsI	GAGTC	2 cut(s)	248, 526
Psp124BI	GAGCTC	1 cut(s)	21
Psp1406I	AACGTT	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	147
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	573
SacI	GAGCTC	1 cut(s)	21
SacII	CCGCGG	1 cut(s)	345
SalI	GTCGAC	1 cut(s)	251
SaqAI	TTAA	3 cut(s)	54, 300, 333
SatI	GCNGC	8 cut(s)	132, 139, 157, 196, 268, 282, 291, 345
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	339
SchI	GAGTC	2 cut(s)	248, 526
SduI	GDGCHC	3 cut(s)	21, 44, 570
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	1 cut(s)	217
Sfr303I	CCGCGG	1 cut(s)	345
SgrBI	CCGCGG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	189, 252, 530
TauI	GCSGC	6 cut(s)	134, 141, 270, 284, 293, 347
Tru1I	TTAA	3 cut(s)	54, 300, 333
Tru9I	TTAA	3 cut(s)	54, 300, 333
TscAI	CASTG	3 cut(s)	41, 115, 410
TseI	GCWGC	2 cut(s)	156, 195
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	3 cut(s)	41, 115, 410
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.