RLG00000022120

cysteine-rich receptor-like protein kinase 43

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
81086640 .. 81089306
2667 bp
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UTR
Exon/CDS
Intron
RLM00000022120

Sequence Viewer

Length: 1662 bp
ATGGAGTTCTTGACGTCCTTGGTTTTGCTCCTCATCATTTCTCTCATACACTTGGTCTTTGGAGACCCTCGAACAGAGCTGGTTGCACGCGCATGCAGCCATACGCGTGCAATTCATACAGCAACTTACCATGTTACCTTCAACAAGGTGGTGGCTGAGATAGATAAAAAAATGCTCCGCAACAAATTTGGGACTGCGGAAGATGGTGTGCCTCCTGACCGGCTTTATATGTTGGCGCAATGCATGACAGATCTTTCCGTCAATGAATGTAAGACGTGCTATGATTTGAGTAAGCATGCCTTGGCTGGTTGCCTTCCTAACACCGGAGGTCGTGCTTTATTTGATGGTTGCTTTATAAGGGCTGAAAATTACAGCTTCTTTGATGAGACATTCCAATATAAAGATTTCAAGTTGGCTGAGCATAATGATGGATTTGCAGTCGCCAAAGATAGCTCAAATGGTTTTACAATGTTTGCTATGGCTAATTGCTGGAGGAGTCTAGACAGTAGTAAGTGTTCTTCATGTGTAGAAAATGCAGCCAACCGTGCAATTTCATGCTTGCCATCGTCTGAGGGCCGTTGCTCAATTCTGGCTGCGTTTTACGTTACTCTGATTATGACTTTGGCAATAACCCTCGAGCCCTCGAAATCAAAGGTTTGCTTATTTGAAGATTTTATATATATGCTGAATCAACATAAATCTGCACTAAAGACTGCCTCATATGTTATTGTTGCGTTGGCCTTGTTGGCCTTGTTCGCATTGATTATTATGCTCGGAATTTGTGCGGGTAAATCTACTTATAGACGAATACCCTACTGTGCTTCCGAGCAGGGCACTTTACATGATGGTAGAGAAATTGCTATAAAACGTATGTTCATAACCGGAAAAATCCAAACTCAAGAGGTGTACAACGAAATTCACATCATTAGCAAAGCTCAACATAAGAACTTGGTTCGCTTCCTTGGCTGTTGCTTCACCAACATCAGCTGCTTCCTTATCTACGAATTCCTAGCAAACAGAAGCCTCGACCTTATATTATTTGACCACGAGAAGAAGGGAGTGTTAGACTGGAAGAAACGGGTCGGAATAATTGTAGGAACAGCAGAAGGTTTGGAGTACCTCCAAAAAGACTGTCCAGTAAGAATAGTTCATCGAGACATCAAAGCTAGCAACATCTTATTAGACCTGAAACATAGACCAAAAATTGCAGATTTTGGACTTGCAAGGTTTTATTCGTCCGACACAAGCTTAAGTAGCACTTTCATTGCTGGCACAATAGGATACATTGCTCCTGAATACCTAGCTCATGAACGTTTAACCGAAAAGGTTGATGTGTATAGCTTTGGGATTCTTTTACTCGAAATCGTCAGTGGAGTTCGGAACAACAATGTTCAGCCCGAAAATCCTTTGCAAACTTTAGTGTGGCACCATGTCCAAAATAATACGATTTCTCGAATTATCGATAAGAGTATGAAGATTGAAGACATTGAAGAAATTAAAAGAGTTGTTCAGGTGGGTCTGTTGTGCACTCAAGAATCACCAGAGTTAAGTCCTACCATGACATCAGTAATTCGAATGCTTATACGAAGAGACTTGGCATTGCCAGCGCCATCAAAGCAACCTTTCCTTGATATTGTAAATATGAAACATCATCATCATTAG

Protein Analysis

554

Amino Acids

62.24

Weight (kDa)

8.17

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 32 - 124 8.6e-12 Salt stress response/antifungal
PK_Tyr_Ser-Thr PF07714 281 - 527 4.1e-39 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 281 - 531 1.9e-38 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
AatII GACGTC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 1425
AccII CGCG 2 cut(s) 90, 106
AciI CCGC 3 cut(s) 178, 197, 785
AclI AACGTT 1 cut(s) 1312
AcsI RAATTY 4 cut(s) 185, 777, 915, 1004
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 2 cut(s) 908, 1118
AfiI CCNNNNNNNGG 1 cut(s) 323
AflII CTTAAG 1 cut(s) 1249
AflIII ACRYGT 1 cut(s) 104
AgsI TTSAA 5 cut(s) 142, 409, 668, 1481, 1490
AjiI CACGTC 1 cut(s) 276
AluBI AGCT 9 cut(s) 79, 375, 453, 935, 987, 1166, 1248, 1304, 1341
AluI AGCT 9 cut(s) 79, 375, 453, 935, 987, 1166, 1248, 1304, 1341
Alw21I GWGCWC 1 cut(s) 1529
Alw26I GTCTC 4 cut(s) 57, 380, 1149, 1584
Alw44I GTGCAC 1 cut(s) 1525
Ama87I CYCGRG 1 cut(s) 635
AoxI GGCC 3 cut(s) 574, 738, 747
ApaLI GTGCAC 1 cut(s) 1525
ApeKI GCWGC 4 cut(s) 96, 536, 593, 987
ApoI RAATTY 4 cut(s) 185, 777, 915, 1004
ArsI GACNNNNNNTTYG 2 cut(s) 1117, 1149
AspLEI GCGC 3 cut(s) 92, 238, 1609
AspS9I GGNCC 1 cut(s) 574
AsuHPI GGTGA 2 cut(s) 967, 1530
AsuII TTCGAA 1 cut(s) 1573
AsuNHI GCTAGC 1 cut(s) 1166
AvaI CYCGRG 1 cut(s) 635
BaeGI GKGCMC 2 cut(s) 836, 1529
BanI GGYRCC 1 cut(s) 1425
BanII GRGCYC 1 cut(s) 642
BarI GAAGNNNNNNTAC 2 cut(s) 502, 534
BauI CACGAG 1 cut(s) 1046
BbsI GAAGAC 1 cut(s) 1488
Bbv12I GWGCWC 1 cut(s) 1529
BbvI GCAGC 4 cut(s) 108, 548, 580, 974
BccI CCATC 6 cut(s) 197, 338, 422, 571, 839, 1618
BceAI ACGGC 1 cut(s) 561
BciVI GTATCC 1 cut(s) 1274
BcoDI GTCTC 4 cut(s) 57, 380, 1149, 1584
BfaI CTAG 4 cut(s) 500, 1010, 1167, 1301
BfoI RGCGCY 1 cut(s) 1610
BfrI CTTAAG 1 cut(s) 1249
BfuI GTATCC 1 cut(s) 1274
BglI GCCNNNNNGGC 1 cut(s) 746
BglII AGATCT 1 cut(s) 250
BisI GCNGC 4 cut(s) 97, 537, 594, 988
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 4 cut(s) 98, 538, 595, 989
BmeT110I CYCGRG 1 cut(s) 635
BmgBI CACGTC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 574
BmiI GGNNCC 1 cut(s) 1427
BmtI GCTAGC 1 cut(s) 1170
BpiI GAAGAC 1 cut(s) 1488
BpmI CTGGAG 1 cut(s) 511
Bpu1102I GCTNAGC 1 cut(s) 417
Bpu14I TTCGAA 1 cut(s) 1573
BpuEI CTTGAG 2 cut(s) 882, 1515
Bsa29I ATCGAT 1 cut(s) 1461
BsaHI GRCGYC 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 3 cut(s) 18, 300, 961
BsaWI WCCGGW 2 cut(s) 323, 881
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse118I RCCGGY 1 cut(s) 219
Bse1I ACTGG 2 cut(s) 1073, 1136
Bse3DI GCAATG 4 cut(s) 245, 1263, 1284, 1598
BseCI ATCGAT 1 cut(s) 1461
BseDI CCNNGG 3 cut(s) 18, 300, 961
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMI GCAATG 4 cut(s) 245, 1263, 1284, 1598
BseMII CTCAG 3 cut(s) 147, 408, 561
BseNI ACTGG 2 cut(s) 1073, 1136
BseRI GAGGAG 2 cut(s) 20, 508
BseSI GKGCMC 2 cut(s) 836, 1529
BseXI GCAGC 4 cut(s) 108, 548, 580, 974
BsgI GTGCAG 1 cut(s) 687
Bsh1236I CGCG 2 cut(s) 90, 106
BshFI GGCC 3 cut(s) 576, 740, 749
BshNI GGYRCC 1 cut(s) 1425
BshVI ATCGAT 1 cut(s) 1461
BsiHKAI GWGCWC 1 cut(s) 1529
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 3 cut(s) 220, 324, 882
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 4 cut(s) 57, 380, 1149, 1584
BsmFI GGGAC 1 cut(s) 205
BsmI GAATGC 1 cut(s) 1581
BsnI GGCC 3 cut(s) 576, 740, 749
Bso31I GGTCTC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 635
Bsp119I TTCGAA 1 cut(s) 1573
Bsp1286I GDGCHC 3 cut(s) 642, 836, 1529
Bsp1407I TGTACA 1 cut(s) 906
Bsp143I GATC 1 cut(s) 250
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 3 cut(s) 178, 197, 785
BspANI GGCC 3 cut(s) 576, 740, 749
BspCNI CTCAG 3 cut(s) 148, 409, 562
BspDI ATCGAT 1 cut(s) 1461
BspFNI CGCG 2 cut(s) 90, 106
BspHI TCATGA 1 cut(s) 1306
BspLI GGNNCC 1 cut(s) 1427
BspOI GCTAGC 1 cut(s) 1170
BspT104I TTCGAA 1 cut(s) 1573
BspT107I GGYRCC 1 cut(s) 1425
BspTI CTTAAG 1 cut(s) 1249
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 4 cut(s) 245, 1263, 1284, 1598
BsrFI RCCGGY 1 cut(s) 219
BsrGI TGTACA 1 cut(s) 906
BsrI ACTGG 2 cut(s) 1073, 1136
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 3 cut(s) 18, 300, 961
BssMI GATC 1 cut(s) 250
BssNI GRCGYC 1 cut(s) 14
BssSI CACGAG 1 cut(s) 1046
BssT1I CCWWGG 3 cut(s) 18, 300, 961
Bst2BI CACGAG 1 cut(s) 1046
Bst4CI ACNGT 4 cut(s) 506, 545, 818, 1133
Bst6I CTCTTC 1 cut(s) 1582
BstACI GRCGYC 1 cut(s) 14
BstAFI CTTAAG 1 cut(s) 1249
BstAUI TGTACA 1 cut(s) 906
BstBI TTCGAA 1 cut(s) 1573
BstC8I GCNNGC 8 cut(s) 88, 94, 108, 297, 560, 1168, 1270, 1605
BstDEI CTNAG 3 cut(s) 156, 417, 570
BstFNI CGCG 2 cut(s) 90, 106
BstH2I RGCGCY 1 cut(s) 1610
BstHHI GCGC 3 cut(s) 92, 238, 1609
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 4 cut(s) 57, 380, 1149, 1584
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 8 cut(s) 96, 545, 746, 755, 963, 1254, 1604, 1615
BstNSI RCATGY 2 cut(s) 96, 299
BstSLI GKGCMC 2 cut(s) 836, 1529
BstUI CGCG 2 cut(s) 90, 106
BstV1I GCAGC 4 cut(s) 108, 548, 580, 974
BstV2I GAAGAC 1 cut(s) 1488
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
Bsu15I ATCGAT 1 cut(s) 1461
BsuI GTATCC 1 cut(s) 1274
BsuRI GGCC 3 cut(s) 576, 740, 749
BsuTUI ATCGAT 1 cut(s) 1461
BtrI CACGTC 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 1375
Cac8I GCNNGC 8 cut(s) 88, 94, 108, 297, 560, 1168, 1270, 1605
CciI TCATGA 1 cut(s) 1306
CfoI GCGC 3 cut(s) 92, 238, 1609
Cfr10I RCCGGY 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 574
ClaI ATCGAT 1 cut(s) 1461
Csp6I GTAC 2 cut(s) 907, 1117
CviQI GTAC 2 cut(s) 907, 1117
DdeI CTNAG 3 cut(s) 156, 417, 570
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 1582
EarI CTCTTC 1 cut(s) 1582
Eco130I CCWWGG 3 cut(s) 18, 300, 961
Eco24I GRGCYC 1 cut(s) 642
Eco31I GGTCTC 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 1004
EcoT14I CCWWGG 3 cut(s) 18, 300, 961
EcoT22I ATGCAT 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 642
ErhI CCWWGG 3 cut(s) 18, 300, 961
FalI AAGNNNNNCTT 6 cut(s) 284, 316, 644, 676, 1243, 1275
FaqI GGGAC 1 cut(s) 205
FauI CCCGC 1 cut(s) 778
FauNDI CATATG 1 cut(s) 721
Fnu4HI GCNGC 4 cut(s) 97, 537, 594, 988
FriOI GRGCYC 1 cut(s) 642
Fsp4HI GCNGC 4 cut(s) 97, 537, 594, 988
FspBI CTAG 4 cut(s) 500, 1010, 1167, 1301
GlaI GCGC 3 cut(s) 91, 237, 1608
GluI GCNGC 4 cut(s) 97, 537, 594, 988
GsuI CTGGAG 1 cut(s) 511
HaeII RGCGCY 1 cut(s) 1610
HaeIII GGCC 3 cut(s) 576, 740, 749
HapII CCGG 3 cut(s) 220, 324, 882
HhaI GCGC 3 cut(s) 92, 238, 1609
Hin1I GRCGYC 1 cut(s) 14
Hin6I GCGC 3 cut(s) 90, 236, 1607
HinP1I GCGC 3 cut(s) 90, 236, 1607
HindIII AAGCTT 1 cut(s) 1246
HinfI GANTC 4 cut(s) 496, 688, 1348, 1535
HpaII CCGG 3 cut(s) 220, 324, 882
HphI GGTGA 2 cut(s) 967, 1530
Hpy166II GTNNAC 2 cut(s) 907, 1527
Hpy188I TCNGA 7 cut(s) 571, 612, 776, 826, 1085, 1240, 1380
Hpy188III TCNNGA 9 cut(s) 10, 215, 500, 899, 1154, 1292, 1307, 1452, 1532
Hpy8I GTNNAC 2 cut(s) 907, 1527
HpyAV CCTTC 4 cut(s) 148, 323, 1048, 1100
HpyCH4III ACNGT 4 cut(s) 506, 545, 818, 1133
HpyCH4IV ACGT 5 cut(s) 14, 275, 603, 868, 1312
HpyF10VI GCNNNNNNNGC 8 cut(s) 96, 545, 746, 755, 963, 1254, 1604, 1615
HpyF3I CTNAG 3 cut(s) 156, 417, 570
HpySE526I ACGT 5 cut(s) 14, 275, 603, 868, 1312
Hsp92I GRCGYC 1 cut(s) 14
HspAI GCGC 3 cut(s) 90, 236, 1607
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 3 cut(s) 33, 180, 1294
Lsp1109I GCAGC 4 cut(s) 108, 548, 580, 974
MaeI CTAG 4 cut(s) 500, 1010, 1167, 1301
MaeII ACGT 5 cut(s) 14, 275, 603, 868, 1312
MaeIII GTNAC 2 cut(s) 133, 604
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 9 cut(s) 212, 510, 680, 1063, 1084, 1486, 1493, 1502, 1599
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 3 cut(s) 642, 836, 1529
MluI ACGCGT 1 cut(s) 104
MlyI GAGTC 1 cut(s) 505
MmeI TCCRAC 2 cut(s) 1063, 1263
Mph1103I ATGCAT 1 cut(s) 245
MseI TTAA 4 cut(s) 1250, 1316, 1497, 1547
MslI CAYNNNNRTG 3 cut(s) 91, 105, 426
MspA1I CMGCKG 1 cut(s) 987
MspCI CTTAAG 1 cut(s) 1249
MspI CCGG 3 cut(s) 220, 324, 882
Mva1269I GAATGC 1 cut(s) 1581
MvnI CGCG 2 cut(s) 90, 106
MwoI GCNNNNNNNGC 8 cut(s) 96, 545, 746, 755, 963, 1254, 1604, 1615
NdeI CATATG 1 cut(s) 721
NdeII GATC 1 cut(s) 250
NheI GCTAGC 1 cut(s) 1166
NlaIV GGNNCC 1 cut(s) 1427
NsiI ATGCAT 1 cut(s) 245
NspI RCATGY 2 cut(s) 96, 299
NspV TTCGAA 1 cut(s) 1573
PaeI GCATGC 2 cut(s) 96, 299
PaeR7I CTCGAG 1 cut(s) 635
PagI TCATGA 1 cut(s) 1306
PctI GAATGC 1 cut(s) 1581
PfeI GAWTC 3 cut(s) 688, 1348, 1535
PkrI GCNGC 4 cut(s) 98, 538, 595, 989
PleI GAGTC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 504
PsiI TTATAA 1 cut(s) 356
Psp1406I AACGTT 1 cut(s) 1312
PspN4I GGNNCC 1 cut(s) 1427
PspPI GGNCC 1 cut(s) 574
PspXI VCTCGAGB 1 cut(s) 635
PsrI GAACNNNNNNTAC 4 cut(s) 499, 531, 1131, 1163
PsuI RGATCY 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 987
RsaI GTAC 2 cut(s) 908, 1118
RsaNI GTAC 2 cut(s) 907, 1117
RseI CAYNNNNRTG 3 cut(s) 91, 105, 426
SaqAI TTAA 4 cut(s) 1250, 1316, 1497, 1547
SatI GCNGC 4 cut(s) 97, 537, 594, 988
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 574
SchI GAGTC 1 cut(s) 505
SduI GDGCHC 3 cut(s) 642, 836, 1529
SfiI GGCCNNNNNGGCC 1 cut(s) 746
Sfr274I CTCGAG 1 cut(s) 635
SfuI TTCGAA 1 cut(s) 1573
SlaI CTCGAG 1 cut(s) 635
SmiMI CAYNNNNRTG 3 cut(s) 91, 105, 426
SmlI CTYRAG 4 cut(s) 635, 897, 1249, 1530
SmoI CTYRAG 4 cut(s) 635, 897, 1249, 1530
SphI GCATGC 2 cut(s) 96, 299
SsiI CCGC 3 cut(s) 178, 197, 785
SspMI CTAG 4 cut(s) 500, 1010, 1167, 1301
StyI CCWWGG 3 cut(s) 18, 300, 961
TaaI ACNGT 4 cut(s) 506, 545, 818, 1133
TaiI ACGT 5 cut(s) 17, 278, 606, 871, 1315
TaqI TCGA 9 cut(s) 70, 636, 644, 1026, 1153, 1359, 1453, 1461, 1573
TatI WGTACW 1 cut(s) 906
TfiI GAWTC 3 cut(s) 688, 1348, 1535
Tru1I TTAA 4 cut(s) 1250, 1316, 1497, 1547
Tru9I TTAA 4 cut(s) 1250, 1316, 1497, 1547
TscAI CASTG 1 cut(s) 1375
TseI GCWGC 4 cut(s) 96, 536, 593, 987
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 1 cut(s) 1375
Vha464I CTTAAG 1 cut(s) 1249
VneI GTGCAC 1 cut(s) 1525
XapI RAATTY 4 cut(s) 185, 777, 915, 1004
XbaI TCTAGA 1 cut(s) 499
XceI RCATGY 2 cut(s) 96, 299
XhoI CTCGAG 1 cut(s) 635
XspI CTAG 4 cut(s) 500, 1010, 1167, 1301
ZraI GACGTC 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.