Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8025498.1

Orthogroup ID

OG0001832

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 443

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8025498.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 442 bp

atgcataccaaaacctcaacatggctcttcttcttcatcttcatcttcttctcgcttttctacctttttctctgtgatcccagaacctcggaagctggcctctactgcggagctgccaagccaccaccaaacgctagcttcattccaacttttgtcgcagaaatggggagtttatcagagctcatcaccaaacaccactggggcacccatttctttaactccacgacccccatgtacggcctagcggaatgctacaacgacctgtcgcacactgattgtcttctctgctacgccgccagccgcaccgagatcccccgctgcctcccctccctctccgcccgcatctttctcgacggctgcttcctccgctacgacaactacagcttctactccgaagcttcagtccccgcagtcgactccgtcgtctgcggccaagaagagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

147

Amino Acids

16.63

Weight (kDa)

5.23

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40380 AT5G40380 AT5G40380
fragaria_vesca	FvH4_4g26070 FvH4_5g05520 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060
malus_domestica	MD14G1177300.v1.1 MD17G1031100.v1.1
prunus_persica	Prupe.3G288600_v2.0.a1 Prupe.5G171200_v2.0.a1
pyrus_communis	pycom14g14810 pycom17g02850
rosa_chinensis	RchiOBHm_Chr2g0089301 RchiOBHm_Chr2g0172611 RchiOBHm_Chr7g0193291
rosa_laevigata	RLG00000004281 RLG00000022120 RLG00000022121 RLG00000022125
rosa_multiflora	Rmu_co8025498.1_g000001 Rmu_sc0017093.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079690 Rroxscaffold_2G00079700 Rroxscaffold_3G00262230
rosa_rugosa	Rorug01G0488900 Rorug02G0246100 Rorug02G0560300 Rorug02G0560400 Rorug07G0008700
rosa_samantha	Rh2AG636700 Rh2AG636900 Rh2BG650100 Rh2BG650300 Rh2CG616800 Rh2CG616900 Rh2DG664300 Rh2DG664400 Rh7BG135300 Rh7CG138300 Rh7DG136300
rosa_wichuraiana	Rw2G052660 Rw2G052670 Rw7G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
AccB1I	GGYRCC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	414
AclWI	GGATC	2 cut(s)	71, 304
AcoI	YGGCCR	1 cut(s)	430
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	21, 236, 439
AluBI	AGCT	6 cut(s)	95, 113, 138, 181, 384, 398
AluI	AGCT	6 cut(s)	95, 113, 138, 181, 384, 398
Alw21I	GWGCWC	1 cut(s)	183
AlwI	GGATC	2 cut(s)	71, 304
AoxI	GGCC	3 cut(s)	97, 238, 430
ApeKI	GCWGC	3 cut(s)	113, 318, 357
ArsI	GACNNNNNNTTYG	2 cut(s)	387, 419
AsuHPI	GGTGA	1 cut(s)	178
AsuNHI	GCTAGC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	3 cut(s)	100, 305, 344
BceAI	ACGGC	2 cut(s)	253, 370
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BfaI	CTAG	2 cut(s)	135, 242
BfmI	CTRYAG	1 cut(s)	379
BisI	GCNGC	6 cut(s)	114, 294, 301, 319, 358, 430
BlsI	GCNGC	6 cut(s)	115, 295, 302, 320, 359, 431
BmiI	GGNNCC	1 cut(s)	205
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	1 cut(s)	351
BmtI	GCTAGC	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 236, 439
Bse1I	ACTGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	87
BseLI	CCNNNNNNNGG	3 cut(s)	21, 236, 439
BseNI	ACTGG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	3 cut(s)	100, 305, 344
BshFI	GGCC	3 cut(s)	99, 240, 432
BshNI	GGYRCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	3 cut(s)	21, 236, 439
BsmFI	GGGAC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	3 cut(s)	99, 240, 432
Bsp1286I	GDGCHC	2 cut(s)	183, 206
Bsp143I	GATC	2 cut(s)	76, 309
BspANI	GGCC	3 cut(s)	99, 240, 432
BspLI	GGNNCC	1 cut(s)	205
BspOI	GCTAGC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	71, 304
BspQI	GCTCTTC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	2 cut(s)	76, 309
Bst6I	CTCTTC	2 cut(s)	32, 432
BstC8I	GCNNGC	4 cut(s)	97, 136, 298, 340
BstKTI	GATC	2 cut(s)	79, 312
BstMBI	GATC	2 cut(s)	76, 309
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 366
BstSFI	CTRYAG	1 cut(s)	379
BstSLI	GKGCMC	1 cut(s)	206
BstV1I	GCAGC	3 cut(s)	100, 305, 344
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
BsuRI	GGCC	3 cut(s)	99, 240, 432
BtsIMutI	CAGTG	2 cut(s)	196, 270
Cac8I	GCNNGC	4 cut(s)	97, 136, 298, 340
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	2 cut(s)	21, 232
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	2 cut(s)	78, 311
DpnII	GATC	2 cut(s)	76, 309
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	2 cut(s)	32, 432
EarI	CTCTTC	2 cut(s)	32, 432
EciI	GGCGGA	1 cut(s)	325
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	384
EcoICRI	GAGCTC	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	2 cut(s)	24, 235
FaiI	YATR	3 cut(s)	6, 22, 233
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	2 cut(s)	20, 231
FauI	CCCGC	3 cut(s)	323, 347, 415
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	6 cut(s)	114, 294, 301, 319, 358, 430
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	6 cut(s)	114, 294, 301, 319, 358, 430
FspBI	CTAG	2 cut(s)	135, 242
GluI	GCNGC	6 cut(s)	114, 294, 301, 319, 358, 430
HaeIII	GGCC	3 cut(s)	99, 240, 432
Hin1II	CATG	2 cut(s)	24, 235
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	1 cut(s)	416
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	3 cut(s)	91, 178, 394
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	2 cut(s)	356, 425
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 366
Hsp92II	CATG	2 cut(s)	24, 235
Kzo9I	GATC	2 cut(s)	76, 309
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	5 cut(s)	81, 94, 184, 275, 310
Lsp1109I	GCAGC	3 cut(s)	100, 305, 344
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	2 cut(s)	135, 242
MalI	GATC	2 cut(s)	78, 311
MboI	GATC	2 cut(s)	76, 309
MboII	GAAGA	7 cut(s)	19, 22, 25, 31, 37, 40, 272
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	2 cut(s)	183, 206
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	8 cut(s)	25, 97, 110, 332, 337, 341, 374, 433
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	318
Mva1269I	GAATGC	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	105, 366
NdeII	GATC	2 cut(s)	76, 309
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	24, 235
NlaIV	GGNNCC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PctI	GAATGC	1 cut(s)	254
PflFI	GACNNNGTC	1 cut(s)	419
PkrI	GCNGC	6 cut(s)	115, 295, 302, 320, 359, 431
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	309
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SacI	GAGCTC	1 cut(s)	183
SalI	GTCGAC	1 cut(s)	413
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	6 cut(s)	114, 294, 301, 319, 358, 430
Sau3AI	GATC	2 cut(s)	76, 309
SchI	GAGTC	1 cut(s)	410
SduI	GDGCHC	2 cut(s)	183, 206
SfaNI	GCATC	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	379
SspMI	CTAG	2 cut(s)	135, 242
SstI	GAGCTC	1 cut(s)	183
TaqI	TCGA	2 cut(s)	351, 414
TauI	GCSGC	3 cut(s)	296, 303, 432
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	2 cut(s)	203, 277
TseI	GCWGC	3 cut(s)	113, 318, 357
TspDTI	ATGAA	3 cut(s)	25, 31, 130
TspGWI	ACGGA	1 cut(s)	409
TspRI	CASTG	2 cut(s)	203, 277
Tth111I	GACNNNGTC	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	2 cut(s)	135, 242
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.