Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001832

Physical Location & Seq

Genomic Coordinates Forward (+)

68602080 .. 68609652

Gene Structure 7573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0560300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2559 bp

ATGCTGATTCCAAGCCTCTCGCTTCCCGCTCCCGCCAAATTGCCTCCGCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCCGACACCACCAAGACCCAAACTTTGAGCCTCTCCACCGCCGTCTGATCACCCAAATCAATGTCGGCCATCTCCGCAACGCAATCTCCACCCTCGATCTCATGGCCCTCCGCGGCTCCCACCCTGGCCTCCCCACCTACTCCCTCCTCCTCAAGTCCTGCCTCCGCTCCCGCAACTTCCACCTCGGGAAGCTCGTCCACGCGCTGCTGACTCAGTCCCCACTCGACCCCGACTCTGTCATTCTCAACTCCTTGATTAGCCTCTACTCGAAATCGGGAGACTTTCAAAAGGCGCGATCGATCTTTCAAACTATGGGAGAGAAGAGAAATTTGGTGTCTTGGAGTGCGATGGTGTCGTGTTTCGCGAACAACGGCATGTCGTTGGAGGCGGTTTCGGCGTTTGTTGATATGCTTGAGGAGGGGTTTTACCCGAACGAGTTTTGCTTTGCGTCGGTTGTTCGGGCGTGTTCGAATTCGGAGCATGTTGGGATTGGGAAGGTGGTTTTCGGGTCGGTGATTAAAACTGGGTATCTTGAGTCGGATGTGTGTGTTGGGTCTTCGTTGATTGACATGTTTGCCAAGGGCGGTGGGGACTTAAGGGATGCATATAAGGTGTTTGAGAAAATGGCTGAGAGGGATGTGGTGACTTGGAGCTTGATGATCACTAGGTTTGCGCAGATGGGTGATCCGAGAAAGGCGGTTGAGTTGTATATGGATATGTTGTCAAATGGGCTAATGCCGGACCAGTTTACAATGAGTGGTGTTGTGTCGGCTTGTACAAAGTTGGGGTCGTTGGCGTTGGGGCAGCAGTTGCATTCGTGGGCTGTACGGTCTCGGTTGGGTTTGGATCACTGCGTTGGGTGTTGTTTGGTGGACATGTATGCCAAGTGTGGAGGTGGTGGGTCGAGGAAGGTGTTTGATCGGATGCGAGAGCATAGTGTTATGTCATGGACTGCTGTTATCACTGGATATGTGCAGAGTGGAGGGGGCAATGAGGAAGCTGTCAAGCTATTTGTTGAAATGATCTCGTGTGGTCATGTTTCGCCGAATCATTTCACGTTTGCTAGCATTCTGAAGGCTTGTGCAAACCTTTCTGATCTGCGTAAGGGAGAGCAAGTTCACTCCCTTGCAGTGAAACTTGGTCTTGCATCGGTTAATTGTGTGGGGAATTCACTTATTAGCATGTATGCAAAGTCTGGCCAGGTGGAAGATGCGCGGAAAGCTTTTGATCTTCTGTATGAGAAGAATTTGATATCTTATAATACAATCGTTGATGCATATGCCAAGCATCTAGACACAGAAGAAGCCTTTGGACTTCTCCATGAAGTCGAGAATACCGGACTTGGGGCTAGTGCTTTCACATTTGCTAGTCTCTTGAGCGGAGCTGCCAGCCTTTGTGCAGTTGATAAGGGCGAGCAAATACATTCCCGGATTATAAAATCAGGATTTGAGTCAAACCAAAGCATTTGCAATGCCTTGGTTTCTATGTATTCCAGGTGTGGAAACATAGACGCTGCTTTTCAAGTGTTTAATGAGATGGAAGATTGGAATGTTATATCATGGACTTCAATGATCACAGGTTTTGCAAAACATGGTTATGCGGCTAGAGCTGTGGGACTGTTTAACCAAATGCTTGAGGCTGGGTTAAAACCGAATGAGATCACATATATTGCTGTTTTATCAGCATGTAGCCATGCCGGTTTGATTTCTGAGGGGTGGAAACACTTGAAGGAAATGCACCAACAACATGGTATTGTCCCAAAAATGGAACACTATGCATGTATGGTTGATTTATTGGGCCGCTCAGGATCCCTTGTAGAAGCCATTGAGTTTATTAACTCAATGCCTTTTGAAGCTGATGCACTAATCTGGCGAACATTTCTTGGAGCATGCCGAGTGCATGGTGACATTGAGCTTGGGAAACATGCGGCAAAGATGATTATTAAGCAGAACCCACACGATTCAGCGGCATATAGCTTACTATCAAATTTGTATGCTTCCACAGGTCAGTGGGAAGAAGTAGCAAATATAAGAAAAAATATGAAAGAGAAAGCTTTGGTCAAAGAAGCAGGTTCTAGCTGGATAGAGGTGAAGAATAAGATGCACAAGTTCCATGTTGGAGATACTTCGCACCCAAAAGCACGGGAGATTTATGATGAACTGGACCAATTGGGTTCAAAGATAAAGAAATTGGGTTACGTCCCCGATACAGATTTTGTACTTCATCAGGTGGAAGAGGAGCAAAAGGAATATTATTTGTTTCAGCACAGTGAGAAATTAGCAGTGGCATTTGGTCTTATAAGCACATCAAAATCGAAACCCATAAGAGTATTCAAGAATCTCCGTGTTTGTGGAGATTGTCACACTGCAATTAAGTATATTTCAAAAGCCACGGGAAGAGAAATAGTGGTAAGGGATTCAAATCGGTTTCATCAGTTCAAGGATGGGACATGTTCTTGCAATGACTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

852

Amino Acids

93.87

Weight (kDa)

7.36

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	138 - 185	4.4e-06	PPR repeat family
PPR_2	PF13041	240 - 288	5e-10	PPR repeat family
PPR	PF01535	243 - 273	9.8e-06	PPR repeat
PPR_2	PF13041	341 - 391	7.3e-08	PPR repeat family
PPR_2	PF13041	444 - 490	1.8e-06	PPR repeat family
PPR_2	PF13041	514 - 546	2.7e-06	PPR repeat family
PPR_2	PF13041	545 - 592	1.6e-11	PPR repeat family
PPR	PF01535	547 - 577	2e-06	PPR repeat
E_motif	PF20431	662 - 724	2.9e-16	E motif
Eplus_motif	PF20430	730 - 752	8.7e-07	E+ motif
DYW_deaminase	PF14432	760 - 852	1.7e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0001832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40380 AT5G40380 AT5G40380
fragaria_vesca	FvH4_4g26070 FvH4_5g05520 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060
malus_domestica	MD14G1177300.v1.1 MD17G1031100.v1.1
prunus_persica	Prupe.3G288600_v2.0.a1 Prupe.5G171200_v2.0.a1
pyrus_communis	pycom14g14810 pycom17g02850
rosa_chinensis	RchiOBHm_Chr2g0089301 RchiOBHm_Chr2g0172611 RchiOBHm_Chr7g0193291
rosa_laevigata	RLG00000004281 RLG00000022120 RLG00000022121 RLG00000022125
rosa_multiflora	Rmu_co8025498.1_g000001 Rmu_sc0017093.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079690 Rroxscaffold_2G00079700 Rroxscaffold_3G00262230
rosa_rugosa	Rorug01G0488900 Rorug02G0246100 Rorug02G0560300 Rorug02G0560400 Rorug07G0008700
rosa_samantha	Rh2AG636700 Rh2AG636900 Rh2BG650100 Rh2BG650300 Rh2CG616800 Rh2CG616900 Rh2DG664300 Rh2DG664400 Rh7BG135300 Rh7CG138300 Rh7DG136300
rosa_wichuraiana	Rw2G052660 Rw2G052670 Rw7G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1344, 1520, 2384
Acc16I	TGCGCA	1 cut(s)	759
Acc36I	ACCTGC	1 cut(s)	2144
AccBSI	CCGCTC	4 cut(s)	29, 252, 1464, 1887
AccII	CGCG	5 cut(s)	198, 287, 379, 449, 1300
AclWI	GGATC	4 cut(s)	764, 939, 1887, 1900
AcoI	YGGCCR	2 cut(s)	151, 1282
AcsI	RAATTY	5 cut(s)	412, 556, 1252, 1330, 2071
AcuI	CTGAAG	1 cut(s)	1178
AfaI	GTAC	3 cut(s)	862, 912, 2304
AfiI	CCNNNNNNNGG	2 cut(s)	1428, 1849
AflII	CTTAAG	1 cut(s)	679
AflIII	ACRYGT	3 cut(s)	654, 960, 2534
AjnI	CCWGG	3 cut(s)	208, 1284, 1577
AjuI	GAANNNNNNNTTGG	4 cut(s)	398, 430, 1377, 1409
AloI	GAACNNNNNNTCC	2 cut(s)	1185, 1217
Alw26I	GTCTC	3 cut(s)	357, 921, 1460
AlwI	GGATC	4 cut(s)	764, 939, 1887, 1900
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	5 cut(s)	151, 189, 211, 1282, 1882
ApeKI	GCWGC	4 cut(s)	289, 889, 1469, 1598
ApoI	RAATTY	5 cut(s)	412, 556, 1252, 1330, 2071
ArsI	GACNNNNNNTTYG	4 cut(s)	92, 124, 857, 889
Asp700I	GAANNNNTTC	1 cut(s)	1136
AspLEI	GCGC	4 cut(s)	289, 379, 760, 1300
AspS9I	GGNCC	4 cut(s)	190, 826, 1882, 2248
AsuC2I	CCSGG	1 cut(s)	1513
AsuHPI	GGTGA	6 cut(s)	127, 610, 739, 779, 2000, 2185
AsuII	TTCGAA	1 cut(s)	554
AsuNHI	GCTAGC	1 cut(s)	1148
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	826, 2248
BalI	TGGCCA	1 cut(s)	1284
BamHI	GGATCC	1 cut(s)	1892
BauI	CACGAG	1 cut(s)	1111
BbsI	GAAGAC	1 cut(s)	633
BbvI	GCAGC	4 cut(s)	276, 901, 1456, 1585
BccI	CCATC	5 cut(s)	162, 427, 757, 1615, 2522
BceAI	ACGGC	2 cut(s)	111, 472
BciT130I	CCWGG	3 cut(s)	210, 1286, 1579
BclI	TGATCA	3 cut(s)	132, 744, 1656
BcnI	CCSGG	1 cut(s)	1513
BcoDI	GTCTC	3 cut(s)	357, 921, 1460
BfaI	CTAG	7 cut(s)	750, 1149, 1376, 1434, 1452, 1689, 2160
BfrI	CTTAAG	1 cut(s)	679
BfuAI	ACCTGC	1 cut(s)	2144
BisI	GCNGC	9 cut(s)	199, 290, 890, 1470, 1599, 1686, 1885, 2013, 2052
BlsI	GCNGC	9 cut(s)	200, 291, 891, 1471, 1600, 1687, 1886, 2014, 2053
Bme1390I	CCNGG	4 cut(s)	210, 1286, 1513, 1579
Bme18I	GGWCC	2 cut(s)	826, 2248
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	4 cut(s)	190, 826, 1882, 2248
BmiI	GGNNCC	2 cut(s)	202, 1894
BmrFI	CCNGG	4 cut(s)	210, 1286, 1513, 1579
BmrI	ACTGGG	1 cut(s)	618
BmsI	GCATC	8 cut(s)	676, 999, 1241, 1285, 1348, 1381, 1933, 2175
BmtI	GCTAGC	1 cut(s)	1152
BmuI	ACTGGG	1 cut(s)	618
BpiI	GAAGAC	1 cut(s)	633
Bpu10I	CCTNAGC	1 cut(s)	1888
Bpu14I	TTCGAA	1 cut(s)	554
BpuEI	CTTGAG	5 cut(s)	221, 518, 638, 1480, 1739
BpuMI	CCSGG	1 cut(s)	1513
Bsa29I	ATCGAT	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	2505
BsaI	GGTCTC	1 cut(s)	921
BsaJI	CCNNGG	6 cut(s)	196, 208, 268, 663, 1560, 2475
BsaWI	WCCGGW	1 cut(s)	1421
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 1185, 1215
Bsc4I	CCNNNNNNNGG	2 cut(s)	1428, 1849
Bse118I	RCCGGY	1 cut(s)	1781
Bse1I	ACTGG	5 cut(s)	613, 829, 1054, 2250, 2558
Bse3DI	GCAATG	3 cut(s)	1081, 1561, 2551
Bse8I	GATNNNNATC	1 cut(s)	2505
BseBI	CCWGG	3 cut(s)	210, 1286, 1579
BseCI	ATCGAT	1 cut(s)	383
BseDI	CCNNGG	6 cut(s)	196, 208, 268, 663, 1560, 2475
BseGI	GGATG	5 cut(s)	631, 691, 727, 1014, 2533
BseJI	GATNNNNATC	1 cut(s)	2505
BseLI	CCNNNNNNNGG	2 cut(s)	1428, 1849
BseMI	GCAATG	3 cut(s)	1081, 1561, 2551
BseMII	CTCAG	4 cut(s)	311, 705, 1785, 1902
BseNI	ACTGG	5 cut(s)	613, 829, 1054, 2250, 2558
BseRI	GAGGAG	4 cut(s)	221, 224, 515, 2336
BseXI	GCAGC	4 cut(s)	276, 901, 1456, 1585
BseYI	CCCAGC	1 cut(s)	1724
BsgI	GTGCAG	2 cut(s)	1079, 1503
Bsh1236I	CGCG	5 cut(s)	198, 287, 379, 449, 1300
Bsh1285I	CGRYCG	1 cut(s)	383
BshFI	GGCC	5 cut(s)	153, 191, 213, 1284, 1884
BshVI	ATCGAT	1 cut(s)	383
BsiEI	CGRYCG	1 cut(s)	383
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	4 cut(s)	824, 1422, 1513, 1782
BslFI	GGGAC	6 cut(s)	286, 689, 1713, 1826, 2270, 2545
BslI	CCNNNNNNNGG	2 cut(s)	1428, 1849
BsmAI	GTCTC	3 cut(s)	357, 921, 1460
BsmFI	GGGAC	6 cut(s)	286, 689, 1713, 1826, 2270, 2545
BsmI	GAATGC	2 cut(s)	898, 1152
BsnI	GGCC	5 cut(s)	153, 191, 213, 1284, 1884
Bso31I	GGTCTC	1 cut(s)	921
BsoBI	CYCGRG	1 cut(s)	269
Bsp119I	TTCGAA	1 cut(s)	554
Bsp1407I	TGTACA	1 cut(s)	860
Bsp68I	TCGCGA	1 cut(s)	449
BspANI	GGCC	5 cut(s)	153, 191, 213, 1284, 1884
BspCNI	CTCAG	4 cut(s)	310, 706, 1786, 1901
BspDI	ATCGAT	1 cut(s)	383
BspFNI	CGCG	5 cut(s)	198, 287, 379, 449, 1300
BspLI	GGNNCC	2 cut(s)	202, 1894
BspMI	ACCTGC	1 cut(s)	2144
BspOI	GCTAGC	1 cut(s)	1152
BspPI	GGATC	4 cut(s)	764, 939, 1887, 1900
BspT104I	TTCGAA	1 cut(s)	554
BspTI	CTTAAG	1 cut(s)	679
BspTNI	GGTCTC	1 cut(s)	921
BsrBI	CCGCTC	4 cut(s)	29, 252, 1464, 1887
BsrDI	GCAATG	3 cut(s)	1081, 1561, 2551
BsrFI	RCCGGY	1 cut(s)	1781
BsrGI	TGTACA	1 cut(s)	860
BsrI	ACTGG	5 cut(s)	613, 829, 1054, 2250, 2558
BssAI	RCCGGY	1 cut(s)	1781
BssECI	CCNNGG	6 cut(s)	196, 208, 268, 663, 1560, 2475
BssSI	CACGAG	1 cut(s)	1111
BssT1I	CCWWGG	2 cut(s)	663, 1560
Bst2BI	CACGAG	1 cut(s)	1111
Bst2UI	CCWGG	3 cut(s)	210, 1286, 1579
Bst4CI	ACNGT	3 cut(s)	915, 1704, 2354
Bst6I	CTCTTC	4 cut(s)	58, 401, 2313, 2476
BstAFI	CTTAAG	1 cut(s)	679
BstAPI	GCANNNNNTGC	1 cut(s)	895
BstAUI	TGTACA	1 cut(s)	860
BstBI	TTCGAA	1 cut(s)	554
BstC8I	GCNNGC	4 cut(s)	1150, 1474, 1499, 1975
BstDEI	CTNAG	4 cut(s)	297, 714, 1794, 1888
BstDSI	CCRYGG	2 cut(s)	196, 2475
BstF5I	GGATG	5 cut(s)	631, 691, 727, 1014, 2533
BstFNI	CGCG	5 cut(s)	198, 287, 379, 449, 1300
BstHHI	GCGC	4 cut(s)	289, 379, 760, 1300
BstMAI	GTCTC	3 cut(s)	357, 921, 1460
BstMCI	CGRYCG	1 cut(s)	383
BstMWI	GCNNNNNNNGC	5 cut(s)	159, 479, 895, 1304, 1691
BstNI	CCWGG	3 cut(s)	210, 1286, 1579
BstSCI	CCNGG	4 cut(s)	208, 1284, 1511, 1577
BstUI	CGCG	5 cut(s)	198, 287, 379, 449, 1300
BstV1I	GCAGC	4 cut(s)	276, 901, 1456, 1585
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	1 cut(s)	1892
BstXI	CCANNNNNNTGG	1 cut(s)	1832
BstYI	RGATCY	1 cut(s)	1892
Bsu15I	ATCGAT	1 cut(s)	383
BsuRI	GGCC	5 cut(s)	153, 191, 213, 1284, 1884
BsuTUI	ATCGAT	1 cut(s)	383
BtgI	CCRYGG	2 cut(s)	196, 2475
BtgZI	GCGATG	1 cut(s)	446
BtsCI	GGATG	5 cut(s)	631, 691, 727, 1014, 2533
BtsI	GCAGTG	4 cut(s)	934, 1221, 2373, 2448
BtsIMutI	CAGTG	7 cut(s)	934, 1047, 1221, 2099, 2359, 2373, 2448
BtuMI	TCGCGA	1 cut(s)	449
BveI	ACCTGC	1 cut(s)	2144
Cac8I	GCNNGC	4 cut(s)	1150, 1474, 1499, 1975
CfoI	GCGC	4 cut(s)	289, 379, 760, 1300
Cfr10I	RCCGGY	1 cut(s)	1781
Cfr13I	GGNCC	4 cut(s)	190, 826, 1882, 2248
Cfr42I	CCGCGG	1 cut(s)	199
ClaI	ATCGAT	1 cut(s)	383
CseI	GACGC	2 cut(s)	522, 1604
Csp6I	GTAC	3 cut(s)	861, 911, 2303
CspCI	CAANNNNNGTGG	2 cut(s)	652, 687
CviQI	GTAC	3 cut(s)	861, 911, 2303
DdeI	CTNAG	4 cut(s)	297, 714, 1794, 1888
EaeI	YGGCCR	2 cut(s)	151, 1282
Eam1104I	CTCTTC	4 cut(s)	58, 401, 2313, 2476
EarI	CTCTTC	4 cut(s)	58, 401, 2313, 2476
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	663, 1560
Eco31I	GGTCTC	1 cut(s)	921
Eco32I	GATATC	1 cut(s)	1338
Eco47I	GGWCC	2 cut(s)	826, 2248
Eco57I	CTGAAG	1 cut(s)	1178
Eco88I	CYCGRG	1 cut(s)	269
EcoRI	GAATTC	2 cut(s)	556, 1252
EcoRII	CCWGG	3 cut(s)	208, 1284, 1577
EcoRV	GATATC	1 cut(s)	1338
EcoT14I	CCWWGG	2 cut(s)	663, 1560
EcoT22I	ATGCAT	3 cut(s)	691, 1363, 1864
ErhI	CCWWGG	2 cut(s)	663, 1560
FaqI	GGGAC	6 cut(s)	286, 689, 1713, 1826, 2270, 2545
FauI	CCCGC	3 cut(s)	34, 40, 263
FauNDI	CATATG	1 cut(s)	1363
FbaI	TGATCA	3 cut(s)	132, 744, 1656
Fnu4HI	GCNGC	9 cut(s)	199, 290, 890, 1470, 1599, 1686, 1885, 2013, 2052
FokI	GGATG	5 cut(s)	638, 698, 734, 1021, 2540
Fsp4HI	GCNGC	9 cut(s)	199, 290, 890, 1470, 1599, 1686, 1885, 2013, 2052
FspBI	CTAG	7 cut(s)	750, 1149, 1376, 1434, 1452, 1689, 2160
FspI	TGCGCA	1 cut(s)	759
GlaI	GCGC	4 cut(s)	288, 378, 759, 1299
GluI	GCNGC	9 cut(s)	199, 290, 890, 1470, 1599, 1686, 1885, 2013, 2052
GsaI	CCCAGC	1 cut(s)	1728
HaeIII	GGCC	5 cut(s)	153, 191, 213, 1284, 1884
HapII	CCGG	4 cut(s)	824, 1422, 1513, 1782
HgaI	GACGC	2 cut(s)	522, 1604
HhaI	GCGC	4 cut(s)	289, 379, 760, 1300
Hin6I	GCGC	4 cut(s)	287, 377, 758, 1298
HinP1I	GCGC	4 cut(s)	287, 377, 758, 1298
HindIII	AAGCTT	2 cut(s)	1305, 2136
HinfI	GANTC	9 cut(s)	7, 295, 317, 620, 1132, 1535, 2045, 2422, 2501
HpaII	CCGG	4 cut(s)	824, 1422, 1513, 1782
HphI	GGTGA	6 cut(s)	127, 610, 739, 779, 2000, 2185
Hpy166II	GTNNAC	4 cut(s)	283, 834, 958, 1204
Hpy188I	TCNGA	9 cut(s)	89, 132, 562, 625, 774, 1008, 1158, 1180, 1795
Hpy8I	GTNNAC	4 cut(s)	283, 834, 958, 1204
Hpy99I	CGWCG	1 cut(s)	538
HpyAV	CCTTC	4 cut(s)	574, 988, 1153, 1807
HpyCH4III	ACNGT	3 cut(s)	915, 1704, 2354
HpyCH4IV	ACGT	2 cut(s)	1142, 2283
HpyF10VI	GCNNNNNNNGC	5 cut(s)	159, 479, 895, 1304, 1691
HpyF3I	CTNAG	4 cut(s)	297, 714, 1794, 1888
HpySE526I	ACGT	2 cut(s)	1142, 2283
HspAI	GCGC	4 cut(s)	287, 377, 758, 1298
Ksp22I	TGATCA	3 cut(s)	132, 744, 1656
KspI	CCGCGG	1 cut(s)	199
LmnI	GCTCC	8 cut(s)	34, 206, 257, 562, 735, 1466, 1970, 2323
Lsp1109I	GCAGC	4 cut(s)	276, 901, 1456, 1585
LweI	GCATC	8 cut(s)	676, 999, 1241, 1285, 1348, 1381, 1933, 2175
MaeI	CTAG	7 cut(s)	750, 1149, 1376, 1434, 1452, 1689, 2160
MaeII	ACGT	2 cut(s)	1142, 2283
MaeIII	GTNAC	4 cut(s)	727, 1988, 2279, 2444
MbiI	CCGCTC	4 cut(s)	29, 252, 1464, 1887
MfeI	CAATTG	1 cut(s)	2252
MflI	RGATCY	1 cut(s)	1892
MlsI	TGGCCA	1 cut(s)	1284
MluNI	TGGCCA	1 cut(s)	1284
MlyI	GAGTC	4 cut(s)	289, 311, 629, 1544
MmeI	TCCRAC	4 cut(s)	112, 447, 603, 2182
Mox20I	TGGCCA	1 cut(s)	1284
Mph1103I	ATGCAT	3 cut(s)	691, 1363, 1864
MroXI	GAANNNNTTC	1 cut(s)	1136
MscI	TGGCCA	1 cut(s)	1284
MseI	TTAA	9 cut(s)	603, 680, 1239, 1614, 1707, 1730, 1920, 2028, 2457
MslI	CAYNNNNRTG	1 cut(s)	1680
Msp20I	TGGCCA	1 cut(s)	1284
MspA1I	CMGCKG	2 cut(s)	198, 2051
MspCI	CTTAAG	1 cut(s)	679
MspI	CCGG	4 cut(s)	824, 1422, 1513, 1782
MspR9I	CCNGG	4 cut(s)	210, 1286, 1513, 1579
MunI	CAATTG	1 cut(s)	2252
Mva1269I	GAATGC	2 cut(s)	898, 1152
MvaI	CCWGG	3 cut(s)	210, 1286, 1579
MvnI	CGCG	5 cut(s)	198, 287, 379, 449, 1300
MwoI	GCNNNNNNNGC	5 cut(s)	159, 479, 895, 1304, 1691
NciI	CCSGG	1 cut(s)	1513
NdeI	CATATG	1 cut(s)	1363
NheI	GCTAGC	1 cut(s)	1148
NlaIV	GGNNCC	2 cut(s)	202, 1894
NmeAIII	GCCGAG	1 cut(s)	2003
NmuCI	GTSAC	3 cut(s)	727, 1988, 2444
NruI	TCGCGA	1 cut(s)	449
NsbI	TGCGCA	1 cut(s)	759
NsiI	ATGCAT	3 cut(s)	691, 1363, 1864
NspV	TTCGAA	1 cut(s)	554
PaeI	GCATGC	1 cut(s)	1977
PciI	ACATGT	3 cut(s)	654, 960, 2534
PcsI	WCGNNNNNNNCGW	2 cut(s)	276, 446
PctI	GAATGC	2 cut(s)	898, 1152
PdmI	GAANNNNTTC	1 cut(s)	1136
PfeI	GAWTC	5 cut(s)	7, 1132, 2045, 2422, 2501
PflFI	GACNNNGTC	2 cut(s)	298, 320
PfoI	TCCNGGA	1 cut(s)	1511
PkrI	GCNGC	9 cut(s)	200, 291, 891, 1471, 1600, 1687, 1886, 2014, 2053
Ple19I	CGATCG	1 cut(s)	383
PleI	GAGTC	4 cut(s)	289, 311, 628, 1543
PpsI	GAGTC	4 cut(s)	289, 311, 628, 1543
PscI	ACATGT	3 cut(s)	654, 960, 2534
PsiI	TTATAA	3 cut(s)	1344, 1520, 2384
Psp6I	CCWGG	3 cut(s)	208, 1284, 1577
PspFI	CCCAGC	1 cut(s)	1724
PspGI	CCWGG	3 cut(s)	208, 1284, 1577
PspN4I	GGNNCC	2 cut(s)	202, 1894
PspPI	GGNCC	4 cut(s)	190, 826, 1882, 2248
PsuI	RGATCY	1 cut(s)	1892
PsyI	GACNNNGTC	2 cut(s)	298, 320
PvuI	CGATCG	1 cut(s)	383
RruI	TCGCGA	1 cut(s)	449
RsaI	GTAC	3 cut(s)	862, 912, 2304
RsaNI	GTAC	3 cut(s)	861, 911, 2303
RseI	CAYNNNNRTG	1 cut(s)	1680
SacII	CCGCGG	1 cut(s)	199
SaqAI	TTAA	9 cut(s)	603, 680, 1239, 1614, 1707, 1730, 1920, 2028, 2457
SatI	GCNGC	9 cut(s)	199, 290, 890, 1470, 1599, 1686, 1885, 2013, 2052
Sau96I	GGNCC	4 cut(s)	190, 826, 1882, 2248
SchI	GAGTC	4 cut(s)	289, 311, 629, 1544
ScrFI	CCNGG	4 cut(s)	210, 1286, 1513, 1579
SfaNI	GCATC	8 cut(s)	676, 999, 1241, 1285, 1348, 1381, 1933, 2175
Sfr303I	CCGCGG	1 cut(s)	199
SfuI	TTCGAA	1 cut(s)	554
SgrBI	CCGCGG	1 cut(s)	199
SinI	GGWCC	2 cut(s)	826, 2248
SmiMI	CAYNNNNRTG	1 cut(s)	1680
SmlI	CTYRAG	6 cut(s)	236, 497, 617, 679, 1459, 1718
SmoI	CTYRAG	6 cut(s)	236, 497, 617, 679, 1459, 1718
SphI	GCATGC	1 cut(s)	1977
SspI	AATATT	1 cut(s)	2336
SspMI	CTAG	7 cut(s)	750, 1149, 1376, 1434, 1452, 1689, 2160
StyD4I	CCNGG	4 cut(s)	208, 1284, 1511, 1577
StyI	CCWWGG	2 cut(s)	663, 1560
TaaI	ACNGT	3 cut(s)	915, 1704, 2354
TaiI	ACGT	2 cut(s)	1145, 2286
TaqI	TCGA	8 cut(s)	180, 309, 353, 383, 554, 989, 1413, 2399
TatI	WGTACW	2 cut(s)	860, 2302
TauI	GCSGC	5 cut(s)	201, 1688, 1887, 2015, 2054
TfiI	GAWTC	5 cut(s)	7, 1132, 2045, 2422, 2501
Tru1I	TTAA	9 cut(s)	603, 680, 1239, 1614, 1707, 1730, 1920, 2028, 2457
Tru9I	TTAA	9 cut(s)	603, 680, 1239, 1614, 1707, 1730, 1920, 2028, 2457
TscAI	CASTG	7 cut(s)	941, 1054, 1221, 2099, 2359, 2373, 2455
TseFI	GTSAC	3 cut(s)	727, 1988, 2444
TseI	GCWGC	4 cut(s)	289, 889, 1469, 1598
Tsp45I	GTSAC	3 cut(s)	727, 1988, 2444
TspDTI	ATGAA	5 cut(s)	1422, 2141, 2256, 2297, 2504
TspGWI	ACGGA	1 cut(s)	2417
TspRI	CASTG	7 cut(s)	941, 1054, 1221, 2099, 2359, 2373, 2455
Tth111I	GACNNNGTC	2 cut(s)	298, 320
Vha464I	CTTAAG	1 cut(s)	679
VpaK11BI	GGWCC	2 cut(s)	826, 2248
XapI	RAATTY	5 cut(s)	412, 556, 1252, 1330, 2071
XbaI	TCTAGA	1 cut(s)	1375
XmnI	GAANNNNTTC	1 cut(s)	1136
XspI	CTAG	7 cut(s)	750, 1149, 1376, 1434, 1452, 1689, 2160
Zsp2I	ATGCAT	3 cut(s)	691, 1363, 1864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.