Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001832

Physical Location & Seq

Genomic Coordinates Forward (+)

86845081 .. 86846407

Gene Structure 1327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG650100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAAGTACCAAATGCTCAGTTTTATCGTCCTGACTATCAATGGAGGCATATCTTCAGTAATCTTATCCAAGGCATTGAATCAAATGGTGCATATTTACGGAAATCAAATGTGTCTACGCATTGCAGCGACAATGCCGAGTTCAATCAGAAATTTAACCAAACAGCAGAGAAAGTTATCAAAAAACTTGTGAAGTTGGCTGAGCATAATGATGGATTTGCAGTCGCCAAAGATAGCTCAAATGGTTTTACAGTGTTTGCTATGGCTAATTGCTGGAGGAGTCTAGACAGTAGTAAGTGTTCTTCATGTGTAGAAAATGCAGCCAACCGTGCAATTTCATGCTTGCCATCGTCTGAGGGCCGTGTGCTCAATTCTGGCTGCGTTTTACGTTACTCTGATTATGACTTTGGCAATAACCCTCGAGCCCTCGAAATCAAAGGTTTGCTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

150

Amino Acids

16.75

Weight (kDa)

8.22

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	42 - 134	1.1e-14	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40380 AT5G40380 AT5G40380
fragaria_vesca	FvH4_4g26070 FvH4_5g05520 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060
malus_domestica	MD14G1177300.v1.1 MD17G1031100.v1.1
prunus_persica	Prupe.3G288600_v2.0.a1 Prupe.5G171200_v2.0.a1
pyrus_communis	pycom14g14810 pycom17g02850
rosa_chinensis	RchiOBHm_Chr2g0089301 RchiOBHm_Chr2g0172611 RchiOBHm_Chr7g0193291
rosa_laevigata	RLG00000004281 RLG00000022120 RLG00000022121 RLG00000022125
rosa_multiflora	Rmu_co8025498.1_g000001 Rmu_sc0017093.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079690 Rroxscaffold_2G00079700 Rroxscaffold_3G00262230
rosa_rugosa	Rorug01G0488900 Rorug02G0246100 Rorug02G0560300 Rorug02G0560400 Rorug07G0008700
rosa_samantha	Rh2AG636700 Rh2AG636900 Rh2BG650100 Rh2BG650300 Rh2CG616800 Rh2CG616900 Rh2DG664300 Rh2DG664400 Rh7BG135300 Rh7CG138300 Rh7DG136300
rosa_wichuraiana	Rw2G052660 Rw2G052670 Rw7G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	40
AfaI	GTAC	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	80, 145
AluBI	AGCT	1 cut(s)	237
AluI	AGCT	1 cut(s)	237
Alw21I	GWGCWC	1 cut(s)	369
Ama87I	CYCGRG	1 cut(s)	420
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	3 cut(s)	126, 320, 378
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	358
AvaI	CYCGRG	1 cut(s)	420
BanII	GRGCYC	1 cut(s)	427
BarI	GAAGNNNNNNTAC	2 cut(s)	286, 318
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	3 cut(s)	138, 332, 365
BccI	CCATC	2 cut(s)	206, 355
BceAI	ACGGC	1 cut(s)	345
BfaI	CTAG	1 cut(s)	284
BisI	GCNGC	3 cut(s)	127, 321, 379
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	3 cut(s)	128, 322, 380
BmeT110I	CYCGRG	1 cut(s)	420
BmgT120I	GGNCC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	295
Bpu1102I	GCTNAGC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	3 cut(s)	32, 192, 345
BseRI	GAGGAG	1 cut(s)	292
BseXI	GCAGC	3 cut(s)	138, 332, 365
BshFI	GGCC	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	420
BsnI	GGCC	1 cut(s)	360
BsoBI	CYCGRG	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	369, 427
Bsp1720I	GCTNAGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	3 cut(s)	31, 193, 346
BsrDI	GCAATG	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	70
Bst4CI	ACNGT	3 cut(s)	253, 290, 329
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	3 cut(s)	18, 201, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	138, 332, 365
BsuRI	GGCC	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	2 cut(s)	306, 339
CviJI	RGCY	7 cut(s)	200, 237, 266, 323, 360, 378, 425
CviKI_1	RGCY	7 cut(s)	200, 237, 266, 323, 360, 378, 425
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	3 cut(s)	18, 201, 354
Eco130I	CCWWGG	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	2 cut(s)	309, 342
FaiI	YATR	7 cut(s)	51, 94, 207, 263, 307, 340, 402
FalI	AAGNNNNNCTT	1 cut(s)	429
FatI	CATG	2 cut(s)	305, 338
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	3 cut(s)	127, 321, 379
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	3 cut(s)	127, 321, 379
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	3 cut(s)	127, 321, 379
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	1 cut(s)	360
Hin1II	CATG	2 cut(s)	309, 342
HinfI	GANTC	2 cut(s)	80, 280
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	3 cut(s)	150, 355, 397
Hpy188III	TCNNGA	2 cut(s)	32, 284
Hpy8I	GTNNAC	1 cut(s)	117
HpyCH4III	ACNGT	3 cut(s)	253, 290, 329
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	5 cut(s)	92, 126, 221, 320, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	3 cut(s)	18, 201, 354
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	2 cut(s)	309, 342
LpnPI	CCDG	3 cut(s)	45, 259, 360
Lsp1109I	GCAGC	3 cut(s)	138, 332, 365
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	1 cut(s)	389
MboII	GAAGA	2 cut(s)	46, 294
MhlI	GDGCHC	2 cut(s)	369, 427
MluCI	AATT	4 cut(s)	152, 268, 333, 370
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	5 cut(s)	39, 270, 349, 429, 437
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	329
NlaIII	CATG	2 cut(s)	309, 342
NmeAIII	GCCGAG	1 cut(s)	163
PaeR7I	CTCGAG	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	128, 322, 380
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	358
PspXI	VCTCGAGB	1 cut(s)	420
PsrI	GAACNNNNNNTAC	2 cut(s)	283, 315
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	127, 321, 379
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	289
SduI	GDGCHC	2 cut(s)	369, 427
SetI	ASST	3 cut(s)	239, 391, 442
Sfr274I	CTCGAG	1 cut(s)	420
SlaI	CTCGAG	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	420
SmoI	CTYRAG	1 cut(s)	420
Sse9I	AATT	4 cut(s)	152, 268, 333, 370
SspMI	CTAG	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	3 cut(s)	253, 290, 329
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	2 cut(s)	421, 429
TasI	AATT	4 cut(s)	152, 268, 333, 370
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	3 cut(s)	126, 320, 378
TspDTI	ATGAA	2 cut(s)	294, 327
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	1 cut(s)	258
XapI	RAATTY	1 cut(s)	152
XbaI	TCTAGA	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	420
XmiI	GTMKAC	1 cut(s)	116
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.