Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001832

Physical Location & Seq

Genomic Coordinates Forward (+)

10072536 .. 10075608

Gene Structure 3073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG135300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGCGATTCCCAATCCCAAAACTTCATTGTTCAACATGGGTTTTCCTCATAATCTTTGTCTTCTTCTTCTCCACTTCCAAATCAGATCCTCGAATCTCCAAAGCCGGTCAGTTCTGCGGAAATTCCACCCACACCTCTGACAGCAACTTCATTCCCAACTTCATAGACGCCATGGAATCCATCTCCAACAGTGTCAACGAGAAACAATGGGGAGAATACAGCATCACCTCACCGGCTCCAAAACTATACGCCTTTGCCCAATGCCATTCCGATCTCTCCCCAAAAGACTGCTCTACTTGTTTCGCAATTTCGAGAACCAAGCTCCCCAAATGCCTCCCTTCAACCTCAGCTCGCATCTACCTCGACGGTTGCTTCCTCGCTTACAATGACCATGACTTTTCGGGCCAGGCCCTCGACGAAGATCACAGGAATGTGAAATGTGGGAGTCCAGTCGATTTTTCGAAAGATAATTACATGAAGGAGGGGTTTCACCTCAAGGTAAGGGATGTGATTGGTAACTTGACGAAGAAGGCTGACGGGAATGAAGGGTTTGCTTTGATGGGGCAGAGAGGTGGAGTTGAAAGTGTTTATGCATTGGCCCAGTGCTGGAGGACCATCAGCGATAAAGGGTGTAGAGATTGTTTGGAAGAAGCTGGGAAGATTCTCGGGGGATGCTTGCCTGGGAAGCAAGGTAGGGCTATGCTGGCAGGGTGTTATATGAGGTACTCTACCGAGAGATTTTATGACATTGAAGAAGAAGAAGCAAATGGAAATGCTGATCTGTGGCATGTTCTAGCTGTCATTATAGCTGGAATGGTCATTTCTGTTTTGTCTCTCTTTGGGTTTATAATGGCCTACCGGAAATTACAAAAAATGACAGGAGTGGACAAATACTCAATTGGGATATCAACTTCTCCACACAAGAACAGCTTGAATTTCAAGAAGAACCATGTTTTCATCGAGGGTTCACACTCAGTTCTTTATTCTGTTTATAAGCACTATAGGGCCAATACTATTACTGAATCTGTTGATGCCATGTTGAAAGGTGAGTACTCCGAAAGAGAGGCGTCAAATGTAGTTCAAATTGGGCTTCTGTGCACGCAAGCTTCTCTTGCACTGAGACCATCCATGTCCGAGGTAGTTCACATGCTGACCGATAAAGAATGTAGCATTCCTTCACCGAAACAGCCTCCGTTCTTGAATGCCAGCATACTTAATTCGGATTCCTCTAGATCTACATTGAGCTATTTGTCGAAAGAGGGAGGAGAGTCTCTAAAGTCCGCCGATCTAGCCAGCTTGGAATCAAATTGTATTCAAACAATGGAAGCATCTGAACCAAGAGTTGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

450

Amino Acids

49.78

Weight (kDa)

6.64

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	39 - 130	1.5e-13	Salt stress response/antifungal
Stress-antifung	PF01657	156 - 244	5.3e-13	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40380 AT5G40380 AT5G40380
fragaria_vesca	FvH4_4g26070 FvH4_5g05520 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060 FvH4_6g51060
malus_domestica	MD14G1177300.v1.1 MD17G1031100.v1.1
prunus_persica	Prupe.3G288600_v2.0.a1 Prupe.5G171200_v2.0.a1
pyrus_communis	pycom14g14810 pycom17g02850
rosa_chinensis	RchiOBHm_Chr2g0089301 RchiOBHm_Chr2g0172611 RchiOBHm_Chr7g0193291
rosa_laevigata	RLG00000004281 RLG00000022120 RLG00000022121 RLG00000022125
rosa_multiflora	Rmu_co8025498.1_g000001 Rmu_sc0017093.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079690 Rroxscaffold_2G00079700 Rroxscaffold_3G00262230
rosa_rugosa	Rorug01G0488900 Rorug02G0246100 Rorug02G0560300 Rorug02G0560400 Rorug07G0008700
rosa_samantha	Rh2AG636700 Rh2AG636900 Rh2BG650100 Rh2BG650300 Rh2CG616800 Rh2CG616900 Rh2DG664300 Rh2DG664400 Rh7BG135300 Rh7CG138300 Rh7DG136300
rosa_wichuraiana	Rw2G052660 Rw2G052670 Rw7G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	848, 993
AciI	CCGC	2 cut(s)	117, 1281
AclWI	GGATC	1 cut(s)	80
AcsI	RAATTY	2 cut(s)	121, 934
AcyI	GRCGYC	2 cut(s)	168, 1067
AfaI	GTAC	2 cut(s)	725, 1052
AfiI	CCNNNNNNNGG	1 cut(s)	606
AjnI	CCWGG	2 cut(s)	405, 679
AluBI	AGCT	9 cut(s)	322, 350, 653, 797, 809, 930, 1106, 1245, 1296
AluI	AGCT	9 cut(s)	322, 350, 653, 797, 809, 930, 1106, 1245, 1296
Alw21I	GWGCWC	1 cut(s)	1100
Alw26I	GTCTC	3 cut(s)	837, 1114, 1275
Alw44I	GTGCAC	1 cut(s)	1096
AlwI	GGATC	1 cut(s)	80
Ama87I	CYCGRG	1 cut(s)	665
AoxI	GGCC	5 cut(s)	403, 408, 597, 852, 1005
ApaLI	GTGCAC	1 cut(s)	1096
ApoI	RAATTY	2 cut(s)	121, 934
AspS9I	GGNCC	5 cut(s)	403, 409, 598, 612, 1005
AsuHPI	GGTGA	5 cut(s)	217, 222, 482, 1058, 1170
AsuII	TTCGAA	1 cut(s)	461
AvaI	CYCGRG	1 cut(s)	665
AvaII	GGWCC	1 cut(s)	612
BaeGI	GKGCMC	1 cut(s)	1100
BarI	GAAGNNNNNNTAC	2 cut(s)	1159, 1191
BbsI	GAAGAC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	1100
BbvCI	CCTCAGC	1 cut(s)	346
BccI	CCATC	4 cut(s)	188, 553, 623, 1132
BcgI	CGANNNNNNTGC	2 cut(s)	343, 377
BciT130I	CCWGG	2 cut(s)	407, 681
BcoDI	GTCTC	3 cut(s)	837, 1114, 1275
BfaI	CTAG	3 cut(s)	794, 1230, 1289
BfmI	CTRYAG	1 cut(s)	1000
BglII	AGATCT	1 cut(s)	1232
BmcAI	AGTACT	1 cut(s)	1052
Bme1390I	CCNGG	2 cut(s)	407, 681
Bme18I	GGWCC	1 cut(s)	612
BmeT110I	CYCGRG	1 cut(s)	665
BmgT120I	GGNCC	5 cut(s)	403, 409, 598, 612, 1005
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	2 cut(s)	407, 681
BmrI	ACTGGG	1 cut(s)	595
BmsI	GCATC	5 cut(s)	231, 363, 662, 1021, 1337
BmuI	ACTGGG	1 cut(s)	595
BpiI	GAAGAC	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	628
Bpu10I	CCTNAGC	1 cut(s)	346
Bpu14I	TTCGAA	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	479
BsaHI	GRCGYC	2 cut(s)	168, 1067
BsaI	GGTCTC	1 cut(s)	1114
BsaJI	CCNNGG	3 cut(s)	171, 680, 1134
BsaWI	WCCGGW	1 cut(s)	858
Bsc4I	CCNNNNNNNGG	1 cut(s)	606
Bse118I	RCCGGY	2 cut(s)	104, 232
Bse1I	ACTGG	2 cut(s)	449, 601
BseBI	CCWGG	2 cut(s)	407, 681
BseDI	CCNNGG	3 cut(s)	171, 680, 1134
BseGI	GGATG	3 cut(s)	511, 677, 1124
BseLI	CCNNNNNNNGG	1 cut(s)	606
BseMII	CTCAG	3 cut(s)	360, 987, 1109
BseNI	ACTGG	2 cut(s)	449, 601
BseRI	GAGGAG	1 cut(s)	1278
BseSI	GKGCMC	1 cut(s)	1100
BseYI	CCCAGC	1 cut(s)	653
BshFI	GGCC	5 cut(s)	405, 410, 599, 854, 1007
BsiHKAI	GWGCWC	1 cut(s)	1100
BsiHKCI	CYCGRG	1 cut(s)	665
BsiSI	CCGG	3 cut(s)	105, 233, 859
BslI	CCNNNNNNNGG	1 cut(s)	606
BsmAI	GTCTC	3 cut(s)	837, 1114, 1275
BsmI	GAATGC	2 cut(s)	1170, 1207
BsnI	GGCC	5 cut(s)	405, 410, 599, 854, 1007
Bso31I	GGTCTC	1 cut(s)	1114
BsoBI	CYCGRG	1 cut(s)	665
Bsp119I	TTCGAA	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	1100
Bsp143I	GATC	6 cut(s)	85, 271, 421, 778, 1232, 1285
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	2 cut(s)	117, 1281
BspANI	GGCC	5 cut(s)	405, 410, 599, 854, 1007
BspCNI	CTCAG	3 cut(s)	359, 986, 1110
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	80
BspT104I	TTCGAA	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	1114
BsrFI	RCCGGY	2 cut(s)	104, 232
BsrI	ACTGG	2 cut(s)	449, 601
BssAI	RCCGGY	2 cut(s)	104, 232
BssECI	CCNNGG	3 cut(s)	171, 680, 1134
BssMI	GATC	6 cut(s)	85, 271, 421, 778, 1232, 1285
BssNI	GRCGYC	2 cut(s)	168, 1067
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	2 cut(s)	407, 681
Bst4CI	ACNGT	2 cut(s)	191, 368
BstACI	GRCGYC	2 cut(s)	168, 1067
BstBI	TTCGAA	1 cut(s)	461
BstC8I	GCNNGC	7 cut(s)	352, 677, 705, 1100, 1104, 1207, 1294
BstDEI	CTNAG	3 cut(s)	346, 973, 1118
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	3 cut(s)	511, 677, 1124
BstKTI	GATC	6 cut(s)	88, 274, 424, 781, 1235, 1288
BstMAI	GTCTC	3 cut(s)	837, 1114, 1275
BstMBI	GATC	6 cut(s)	85, 271, 421, 778, 1232, 1285
BstMWI	GCNNNNNNNGC	4 cut(s)	685, 704, 1112, 1289
BstNI	CCWGG	2 cut(s)	407, 681
BstNSI	RCATGY	2 cut(s)	791, 1150
BstSCI	CCNGG	2 cut(s)	405, 679
BstSFI	CTRYAG	1 cut(s)	1000
BstSLI	GKGCMC	1 cut(s)	1100
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	2 cut(s)	85, 1232
BstYI	RGATCY	2 cut(s)	85, 1232
BsuRI	GGCC	5 cut(s)	405, 410, 599, 854, 1007
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	511, 677, 1124
BtsIMutI	CAGTG	3 cut(s)	196, 608, 1115
Cac8I	GCNNGC	7 cut(s)	352, 677, 705, 1100, 1104, 1207, 1294
Cfr10I	RCCGGY	2 cut(s)	104, 232
Cfr13I	GGNCC	5 cut(s)	403, 409, 598, 612, 1005
CseI	GACGC	2 cut(s)	176, 1056
Csp6I	GTAC	2 cut(s)	724, 1051
CviAII	CATG	9 cut(s)	36, 172, 392, 475, 788, 950, 1036, 1129, 1147
CviQI	GTAC	2 cut(s)	724, 1051
DdeI	CTNAG	3 cut(s)	346, 973, 1118
DpnI	GATC	6 cut(s)	87, 273, 423, 780, 1234, 1287
DpnII	GATC	6 cut(s)	85, 271, 421, 778, 1232, 1285
EciI	GGCGGA	1 cut(s)	1270
Eco130I	CCWWGG	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	1114
Eco32I	GATATC	1 cut(s)	906
Eco47I	GGWCC	1 cut(s)	612
Eco88I	CYCGRG	1 cut(s)	665
EcoO109I	RGGNCCY	1 cut(s)	409
EcoRII	CCWGG	2 cut(s)	405, 679
EcoRV	GATATC	1 cut(s)	906
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	9 cut(s)	39, 175, 395, 478, 791, 953, 1039, 1132, 1150
FalI	AAGNNNNNCTT	4 cut(s)	914, 946, 1095, 1127
FatI	CATG	9 cut(s)	35, 171, 391, 474, 787, 949, 1035, 1128, 1146
FokI	GGATG	3 cut(s)	518, 684, 1111
FspBI	CTAG	3 cut(s)	794, 1230, 1289
GsaI	CCCAGC	1 cut(s)	657
GsuI	CTGGAG	1 cut(s)	628
HaeIII	GGCC	5 cut(s)	405, 410, 599, 854, 1007
HapII	CCGG	3 cut(s)	105, 233, 859
HgaI	GACGC	2 cut(s)	176, 1056
Hin1I	GRCGYC	2 cut(s)	168, 1067
Hin1II	CATG	9 cut(s)	39, 175, 395, 478, 791, 953, 1039, 1132, 1150
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	1104
HinfI	GANTC	9 cut(s)	6, 93, 176, 445, 661, 1022, 1223, 1268, 1301
HpaII	CCGG	3 cut(s)	105, 233, 859
HphI	GGTGA	5 cut(s)	217, 222, 482, 1058, 1170
Hpy166II	GTNNAC	5 cut(s)	196, 886, 968, 1098, 1144
Hpy188I	TCNGA	7 cut(s)	85, 139, 271, 1057, 1135, 1222, 1333
Hpy188III	TCNNGA	4 cut(s)	312, 940, 1198, 1230
Hpy8I	GTNNAC	5 cut(s)	196, 886, 968, 1098, 1144
Hpy99I	CGWCG	2 cut(s)	368, 419
HpyAV	CCTTC	5 cut(s)	348, 472, 523, 539, 1185
HpyCH4III	ACNGT	2 cut(s)	191, 368
HpyCH4V	TGCA	3 cut(s)	593, 1098, 1115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	685, 704, 1112, 1289
HpyF3I	CTNAG	3 cut(s)	346, 973, 1118
Hsp92I	GRCGYC	2 cut(s)	168, 1067
Hsp92II	CATG	9 cut(s)	39, 175, 395, 478, 791, 953, 1039, 1132, 1150
Kzo9I	GATC	6 cut(s)	85, 271, 421, 778, 1232, 1285
LmnI	GCTCC	2 cut(s)	241, 327
LweI	GCATC	5 cut(s)	231, 363, 662, 1021, 1337
MaeI	CTAG	3 cut(s)	794, 1230, 1289
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	6 cut(s)	87, 273, 423, 780, 1234, 1287
MboI	GATC	6 cut(s)	85, 271, 421, 778, 1232, 1285
MfeI	CAATTG	1 cut(s)	897
MflI	RGATCY	2 cut(s)	85, 1232
MhlI	GDGCHC	1 cut(s)	1100
MluCI	AATT	9 cut(s)	121, 306, 469, 863, 897, 934, 1083, 1216, 1306
MlyI	GAGTC	2 cut(s)	454, 1277
MmeI	TCCRAC	1 cut(s)	210
Mph1103I	ATGCAT	1 cut(s)	595
MseI	TTAA	1 cut(s)	1215
MslI	CAYNNNNRTG	1 cut(s)	429
MspI	CCGG	3 cut(s)	105, 233, 859
MspR9I	CCNGG	2 cut(s)	407, 681
MunI	CAATTG	1 cut(s)	897
Mva1269I	GAATGC	2 cut(s)	1170, 1207
MvaI	CCWGG	2 cut(s)	407, 681
MwoI	GCNNNNNNNGC	4 cut(s)	685, 704, 1112, 1289
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	6 cut(s)	85, 271, 421, 778, 1232, 1285
NlaIII	CATG	9 cut(s)	39, 175, 395, 478, 791, 953, 1039, 1132, 1150
NlaIV	GGNNCC	1 cut(s)	237
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	2 cut(s)	791, 1150
NspV	TTCGAA	1 cut(s)	461
PctI	GAATGC	2 cut(s)	1170, 1207
PfeI	GAWTC	7 cut(s)	6, 93, 176, 661, 1022, 1223, 1301
PleI	GAGTC	2 cut(s)	453, 1276
PpsI	GAGTC	2 cut(s)	453, 1276
PsiI	TTATAA	2 cut(s)	848, 993
Psp6I	CCWGG	2 cut(s)	405, 679
PspFI	CCCAGC	1 cut(s)	653
PspGI	CCWGG	2 cut(s)	405, 679
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	5 cut(s)	403, 409, 598, 612, 1005
PsuI	RGATCY	2 cut(s)	85, 1232
RsaI	GTAC	2 cut(s)	725, 1052
RsaNI	GTAC	2 cut(s)	724, 1051
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	1215
Sau3AI	GATC	6 cut(s)	85, 271, 421, 778, 1232, 1285
Sau96I	GGNCC	5 cut(s)	403, 409, 598, 612, 1005
ScaI	AGTACT	1 cut(s)	1052
SchI	GAGTC	2 cut(s)	454, 1277
ScrFI	CCNGG	2 cut(s)	407, 681
SduI	GDGCHC	1 cut(s)	1100
SfaNI	GCATC	5 cut(s)	231, 363, 662, 1021, 1337
SfcI	CTRYAG	1 cut(s)	1000
SfuI	TTCGAA	1 cut(s)	461
SinI	GGWCC	1 cut(s)	612
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	9 cut(s)	121, 306, 469, 863, 897, 934, 1083, 1216, 1306
SsiI	CCGC	2 cut(s)	117, 1281
SspMI	CTAG	3 cut(s)	794, 1230, 1289
StyD4I	CCNGG	2 cut(s)	405, 679
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	191, 368
TaqI	TCGA	8 cut(s)	91, 311, 363, 414, 453, 461, 960, 1253
TaqII	GACCGA	1 cut(s)	1169
TasI	AATT	9 cut(s)	121, 306, 469, 863, 897, 934, 1083, 1216, 1306
TatI	WGTACW	1 cut(s)	1050
TfiI	GAWTC	7 cut(s)	6, 93, 176, 661, 1022, 1223, 1301
Tru1I	TTAA	1 cut(s)	1215
Tru9I	TTAA	1 cut(s)	1215
TscAI	CASTG	3 cut(s)	196, 608, 1122
TspDTI	ATGAA	6 cut(s)	14, 139, 151, 491, 558, 946
TspGWI	ACGGA	1 cut(s)	1182
TspRI	CASTG	3 cut(s)	196, 608, 1122
VneI	GTGCAC	1 cut(s)	1096
VpaK11BI	GGWCC	1 cut(s)	612
XapI	RAATTY	2 cut(s)	121, 934
XbaI	TCTAGA	1 cut(s)	1229
XceI	RCATGY	2 cut(s)	791, 1150
XspI	CTAG	3 cut(s)	794, 1230, 1289
ZrmI	AGTACT	1 cut(s)	1052
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.