Rh4CG452400

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0009753
Physical Location & Seq
Forward (+)
68548754 .. 68554344
5591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG452400.1

Sequence Viewer

Length: 1239 bp
ATGATGATGGAAACATCCAATCACTGGCTTTCTTTAATTTATGAATGCAGGAGGGACAGTTTTATCACTCATAGGGCCTTCTGTGATGCACTGGCTCAGGAAAGTGCAAGACATCAACCTAATCTGAGCAGCCTTGGCAGCAACTTATATGGAGGTACCAGCAACACTGGCCTAGCCTTATCTCATCATCACCATCAACAACAAGTTGTGGGTCCTAACATTGATCATCATCACCACAACAATCAATCAACGGCTGCTGACATCTTACGACTCGGAGGCGGCAGCGGCAATGCCCGGACCGGACAGTTCGATCATCTCCTTTCTCCTCCTTCCATGGGGTCGTCTTTTCGTCCGGCGCAATCTTCGGCACCCTTCTTCATTAATCAAGACCAATCTAGCCAGCAATACCATCACGATCAAGAACAGTTGCAGAGCAAACAATTCCATGGACTGATGCAATTTTCTGATCATCAGAACAACAACTCTTCCTCAGGAGGCAATCTGTTTAACCTACCTTTCTTATCAAACAGCAACAACAGCAACAACGCCGGTGGAGCCAATAGTACTAATCTACTGCTTCATCCTGATCACCAGTACAACAGTAATGGCGGTGAAGGCGGGTCGAGTCTCTTCTCAGGTCACATGATGGGTGGAGGCGGTGGTGATCACATGAGCTCCGGCAATGTCTCTTCGCTCTATAGTTCTCAAGTACAAAACAACCATCATGGTGCAGGTGCAGCCGTCTCGCACATGTCCGCCACAGCGCTGCTTCAGAAGGCGGCTCAAATGGGGTCAACTACTTCGAGCAACAATACTTCTGCCTCGCTCCTAAGAAGCTTTGGAAGCACTTCCTCGACTAAATCTGAACGCCCCGCCGCGGCGGCCTCCCTTGTTCCTGCCAATTTAGGCGGCATTTTTGGTGGTGGCAGTGAAAATGAGAACAACCTCCAAGACCTAATGAACTCTTTTGCTGCTGGAGGGAGCTCCTCTATTTTCGGAACCGGGTCATTTGGCAGTGGATTTCATGACGTGGCAAGTAGGGACGAGCCCAAGTTGCCGGCGGTGAGCATAGGAGCCGGGTCTGATAGGTTAACTAGGGATTTTCTTGGTGTTGGTCAGATTGTTAGAAGTATGAGCGGTGGGCAACAACAAACTCAGATCGAGCATATGAGCTCCTTGGATTCAGAGAGCAATGCTGCGCCGTCAACCCAATCTTTTGGAGGAGGTGGGAATTTTTAG

Protein Analysis

412

Amino Acids

43.15

Weight (kDa)

6.17

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2CH-4th_BIRD-IDD PF22992 17 - 43 5e-13 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 722
Acc36I ACCTGC 1 cut(s) 722
Acc65I GGTACC 1 cut(s) 155
AccB1I GGYRCC 2 cut(s) 155, 367
AccB7I CCANNNNNTGG 1 cut(s) 24
AccBSI CCGCTC 1 cut(s) 1137
AccII CGCG 1 cut(s) 878
AcsI RAATTY 1 cut(s) 1231
AcuI CTGAAG 1 cut(s) 755
AfaI GTAC 4 cut(s) 157, 565, 596, 711
AfeI AGCGCT 1 cut(s) 765
AfiI CCNNNNNNNGG 3 cut(s) 24, 335, 877
AflIII ACRYGT 1 cut(s) 750
AjiI CACGTC 1 cut(s) 1030
AluBI AGCT 4 cut(s) 675, 837, 984, 1173
AluI AGCT 4 cut(s) 675, 837, 984, 1173
Alw21I GWGCWC 3 cut(s) 677, 986, 1175
Alw26I GTCTC 3 cut(s) 632, 691, 748
Aor51HI AGCGCT 1 cut(s) 765
AoxI GGCC 3 cut(s) 75, 169, 882
ApeKI GCWGC 8 cut(s) 129, 138, 254, 282, 737, 766, 971, 1196
ApoI RAATTY 1 cut(s) 1231
AseI ATTAAT 1 cut(s) 381
Asp700I GAANNNNTTC 1 cut(s) 847
Asp718I GGTACC 1 cut(s) 155
AspLEI GCGC 3 cut(s) 358, 766, 1201
AspS9I GGNCC 3 cut(s) 75, 212, 297
AsuC2I CCSGG 3 cut(s) 295, 1003, 1078
AsuHPI GGTGA 6 cut(s) 182, 224, 581, 623, 674, 1075
AvaII GGWCC 2 cut(s) 212, 297
AxyI CCTNAGG 1 cut(s) 490
BanI GGYRCC 2 cut(s) 155, 367
BanII GRGCYC 4 cut(s) 677, 986, 1050, 1175
Bbv12I GWGCWC 3 cut(s) 677, 986, 1175
BbvI GCAGC 8 cut(s) 141, 150, 241, 294, 749, 753, 958, 1183
BccI CCATC 4 cut(s) 201, 417, 640, 729
BceAI ACGGC 3 cut(s) 267, 725, 1186
BcgI CGANNNNNNTGC 2 cut(s) 726, 760
BclI TGATCA 4 cut(s) 223, 466, 586, 664
BcnI CCSGG 3 cut(s) 295, 1003, 1078
BcoDI GTCTC 3 cut(s) 632, 691, 748
BfaI CTAG 3 cut(s) 173, 396, 1095
BfmI CTRYAG 1 cut(s) 697
BfoI RGCGCY 1 cut(s) 767
BfuAI ACCTGC 1 cut(s) 722
BglI GCCNNNNNGGC 1 cut(s) 881
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 3 cut(s) 295, 1003, 1078
Bme18I GGWCC 2 cut(s) 212, 297
BmgBI CACGTC 1 cut(s) 1030
BmgT120I GGNCC 3 cut(s) 75, 212, 297
BmiI GGNNCC 6 cut(s) 157, 213, 369, 556, 1000, 1075
BmrFI CCNGG 3 cut(s) 295, 1003, 1078
BmsI GCATC 2 cut(s) 76, 444
BpmI CTGGAG 1 cut(s) 996
Bpu10I CCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 690
BpuMI CCSGG 3 cut(s) 295, 1003, 1078
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 5 cut(s) 133, 333, 445, 876, 1176
BsaWI WCCGGW 1 cut(s) 299
BsaXI ACNNNNNCTCC 4 cut(s) 43, 73, 659, 689
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 335, 877
Bse118I RCCGGY 2 cut(s) 548, 1057
Bse1I ACTGG 4 cut(s) 29, 96, 172, 592
Bse21I CCTNAGG 1 cut(s) 490
Bse3DI GCAATG 3 cut(s) 295, 688, 1198
Bse8I GATNNNNATC 1 cut(s) 228
BseDI CCNNGG 5 cut(s) 133, 333, 445, 876, 1176
BseGI GGATG 2 cut(s) 14, 580
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 3 cut(s) 24, 335, 877
BseMI GCAATG 3 cut(s) 295, 688, 1198
BseMII CTCAG 5 cut(s) 110, 116, 504, 648, 1169
BseNI ACTGG 4 cut(s) 29, 96, 172, 592
BseRI GAGGAG 3 cut(s) 315, 976, 1236
BseXI GCAGC 8 cut(s) 141, 150, 241, 294, 749, 753, 958, 1183
BsgI GTGCAG 2 cut(s) 750, 756
Bsh1236I CGCG 1 cut(s) 878
BshFI GGCC 3 cut(s) 77, 171, 884
BshNI GGYRCC 2 cut(s) 155, 367
BsiHKAI GWGCWC 3 cut(s) 677, 986, 1175
BsiSI CCGG 8 cut(s) 295, 300, 353, 549, 678, 1002, 1058, 1077
BslFI GGGAC 2 cut(s) 68, 1055
BslI CCNNNNNNNGG 3 cut(s) 24, 335, 877
BsmAI GTCTC 3 cut(s) 632, 691, 748
BsmBI CGTCTC 1 cut(s) 748
BsmFI GGGAC 2 cut(s) 68, 1055
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 3 cut(s) 77, 171, 884
Bsp1286I GDGCHC 4 cut(s) 677, 986, 1050, 1175
Bsp143I GATC 7 cut(s) 223, 310, 415, 466, 586, 664, 1158
Bsp19I CCATGG 2 cut(s) 333, 445
BspANI GGCC 3 cut(s) 77, 171, 884
BspCNI CTCAG 5 cut(s) 109, 117, 503, 647, 1168
BspFNI CGCG 1 cut(s) 878
BspHI TCATGA 1 cut(s) 1024
BspLI GGNNCC 6 cut(s) 157, 213, 369, 556, 1000, 1075
BspMI ACCTGC 1 cut(s) 722
BspT107I GGYRCC 2 cut(s) 155, 367
BsrBI CCGCTC 1 cut(s) 1137
BsrDI GCAATG 3 cut(s) 295, 688, 1198
BsrFI RCCGGY 2 cut(s) 548, 1057
BsrI ACTGG 4 cut(s) 29, 96, 172, 592
BssAI RCCGGY 2 cut(s) 548, 1057
BssECI CCNNGG 5 cut(s) 133, 333, 445, 876, 1176
BssMI GATC 7 cut(s) 223, 310, 415, 466, 586, 664, 1158
BssT1I CCWWGG 4 cut(s) 133, 333, 445, 1176
Bst4CI ACNGT 4 cut(s) 59, 306, 426, 602
Bst6I CTCTTC 3 cut(s) 490, 635, 694
BstC8I GCNNGC 2 cut(s) 401, 1059
BstDEI CTNAG 6 cut(s) 96, 125, 490, 634, 830, 1155
BstDSI CCRYGG 3 cut(s) 333, 445, 876
BstF5I GGATG 2 cut(s) 14, 580
BstFNI CGCG 1 cut(s) 878
BstH2I RGCGCY 1 cut(s) 767
BstHHI GCGC 3 cut(s) 358, 766, 1201
BstKTI GATC 7 cut(s) 226, 313, 418, 469, 589, 667, 1161
BstMAI GTCTC 3 cut(s) 632, 691, 748
BstMBI GATC 7 cut(s) 223, 310, 415, 466, 586, 664, 1158
BstNSI RCATGY 1 cut(s) 754
BstSCI CCNGG 3 cut(s) 293, 1001, 1076
BstSFI CTRYAG 1 cut(s) 697
BstUI CGCG 1 cut(s) 878
BstV1I GCAGC 8 cut(s) 141, 150, 241, 294, 749, 753, 958, 1183
BstXI CCANNNNNNTGG 1 cut(s) 1217
Bsu36I CCTNAGG 1 cut(s) 490
BsuRI GGCC 3 cut(s) 77, 171, 884
BtgI CCRYGG 3 cut(s) 333, 445, 876
BtrI CACGTC 1 cut(s) 1030
BtsCI GGATG 2 cut(s) 14, 580
BtsI GCAGTG 2 cut(s) 934, 1021
BtsIMutI CAGTG 5 cut(s) 22, 89, 165, 934, 1021
BveI ACCTGC 1 cut(s) 722
Cac8I GCNNGC 2 cut(s) 401, 1059
CciI TCATGA 1 cut(s) 1024
CfoI GCGC 3 cut(s) 358, 766, 1201
Cfr10I RCCGGY 2 cut(s) 548, 1057
Cfr13I GGNCC 3 cut(s) 75, 212, 297
Cfr42I CCGCGG 1 cut(s) 879
CpoI CGGWCCG 1 cut(s) 297
Csp6I GTAC 4 cut(s) 156, 564, 595, 710
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CspI CGGWCCG 1 cut(s) 297
CviAII CATG 7 cut(s) 334, 446, 643, 670, 725, 751, 1025
CviQI GTAC 4 cut(s) 156, 564, 595, 710
DdeI CTNAG 6 cut(s) 96, 125, 490, 634, 830, 1155
DpnI GATC 7 cut(s) 225, 312, 417, 468, 588, 666, 1160
DpnII GATC 7 cut(s) 223, 310, 415, 466, 586, 664, 1158
Eam1104I CTCTTC 3 cut(s) 490, 635, 694
EarI CTCTTC 3 cut(s) 490, 635, 694
EciI GGCGGA 1 cut(s) 745
Ecl136II GAGCTC 3 cut(s) 675, 984, 1173
Eco130I CCWWGG 4 cut(s) 133, 333, 445, 1176
Eco24I GRGCYC 4 cut(s) 677, 986, 1050, 1175
Eco47I GGWCC 2 cut(s) 212, 297
Eco47III AGCGCT 1 cut(s) 765
Eco53kI GAGCTC 3 cut(s) 675, 984, 1173
Eco57I CTGAAG 1 cut(s) 755
Eco81I CCTNAGG 1 cut(s) 490
EcoICRI GAGCTC 3 cut(s) 675, 984, 1173
EcoO109I RGGNCCY 2 cut(s) 75, 212
EcoT14I CCWWGG 4 cut(s) 133, 333, 445, 1176
EcoT38I GRGCYC 4 cut(s) 677, 986, 1050, 1175
ErhI CCWWGG 4 cut(s) 133, 333, 445, 1176
Esp3I CGTCTC 1 cut(s) 748
FaeI CATG 7 cut(s) 337, 449, 646, 673, 728, 754, 1028
FaqI GGGAC 2 cut(s) 68, 1055
FatI CATG 7 cut(s) 333, 445, 642, 669, 724, 750, 1024
FauI CCCGC 2 cut(s) 611, 880
FauNDI CATATG 1 cut(s) 1167
FbaI TGATCA 4 cut(s) 223, 466, 586, 664
FokI GGATG 1 cut(s) 567
FriOI GRGCYC 4 cut(s) 677, 986, 1050, 1175
FspBI CTAG 3 cut(s) 173, 396, 1095
GlaI GCGC 3 cut(s) 357, 765, 1200
GsuI CTGGAG 1 cut(s) 996
HaeII RGCGCY 1 cut(s) 767
HaeIII GGCC 3 cut(s) 77, 171, 884
HapII CCGG 8 cut(s) 295, 300, 353, 549, 678, 1002, 1058, 1077
HhaI GCGC 3 cut(s) 358, 766, 1201
Hin1II CATG 7 cut(s) 337, 449, 646, 673, 728, 754, 1028
Hin6I GCGC 3 cut(s) 356, 764, 1199
HinP1I GCGC 3 cut(s) 356, 764, 1199
HincII GTYRAC 3 cut(s) 795, 1092, 1206
HindII GTYRAC 3 cut(s) 795, 1092, 1206
HindIII AAGCTT 1 cut(s) 835
HinfI GANTC 3 cut(s) 270, 625, 1181
HpaI GTTAAC 1 cut(s) 1092
HpaII CCGG 8 cut(s) 295, 300, 353, 549, 678, 1002, 1058, 1077
HphI GGTGA 6 cut(s) 182, 224, 581, 623, 674, 1075
Hpy166II GTNNAC 3 cut(s) 795, 1092, 1206
Hpy188III TCNNGA 7 cut(s) 98, 386, 413, 419, 492, 584, 1025
Hpy8I GTNNAC 3 cut(s) 795, 1092, 1206
HpyAV CCTTC 5 cut(s) 88, 339, 382, 608, 769
HpyCH4III ACNGT 4 cut(s) 59, 306, 426, 602
HpyCH4IV ACGT 1 cut(s) 1029
HpyCH4V TGCA 7 cut(s) 48, 89, 107, 430, 457, 731, 737
HpyF3I CTNAG 6 cut(s) 96, 125, 490, 634, 830, 1155
HpySE526I ACGT 1 cut(s) 1029
Hsp92II CATG 7 cut(s) 337, 449, 646, 673, 728, 754, 1028
HspAI GCGC 3 cut(s) 356, 764, 1199
KpnI GGTACC 1 cut(s) 159
KroI GCCGGC 1 cut(s) 1057
KroNI GCCGGC 1 cut(s) 1059
Ksp22I TGATCA 4 cut(s) 223, 466, 586, 664
KspAI GTTAAC 1 cut(s) 1092
KspI CCGCGG 1 cut(s) 879
Kzo9I GATC 7 cut(s) 223, 310, 415, 466, 586, 664, 1158
LmnI GCTCC 7 cut(s) 554, 680, 831, 981, 989, 1073, 1178
Lsp1109I GCAGC 8 cut(s) 141, 150, 241, 294, 749, 753, 958, 1183
LweI GCATC 2 cut(s) 76, 444
MaeI CTAG 3 cut(s) 173, 396, 1095
MaeII ACGT 1 cut(s) 1029
MaeIII GTNAC 1 cut(s) 638
MalI GATC 7 cut(s) 225, 312, 417, 468, 588, 666, 1160
MbiI CCGCTC 1 cut(s) 1137
MboI GATC 7 cut(s) 223, 310, 415, 466, 586, 664, 1158
MboII GAAGA 5 cut(s) 354, 367, 477, 622, 681
MhlI GDGCHC 4 cut(s) 677, 986, 1050, 1175
MluCI AATT 5 cut(s) 36, 440, 458, 901, 1231
MlyI GAGTC 2 cut(s) 264, 634
MroNI GCCGGC 1 cut(s) 1057
MroXI GAANNNNTTC 1 cut(s) 847
MseI TTAA 4 cut(s) 35, 381, 507, 1091
MslI CAYNNNNRTG 1 cut(s) 726
MspA1I CMGCKG 2 cut(s) 285, 878
MspI CCGG 8 cut(s) 295, 300, 353, 549, 678, 1002, 1058, 1077
MspR9I CCNGG 3 cut(s) 295, 1003, 1078
Mva1269I GAATGC 1 cut(s) 50
MvnI CGCG 1 cut(s) 878
NaeI GCCGGC 1 cut(s) 1059
NciI CCSGG 3 cut(s) 295, 1003, 1078
NcoI CCATGG 2 cut(s) 333, 445
NdeI CATATG 1 cut(s) 1167
NdeII GATC 7 cut(s) 223, 310, 415, 466, 586, 664, 1158
NgoMIV GCCGGC 1 cut(s) 1057
NlaIII CATG 7 cut(s) 337, 449, 646, 673, 728, 754, 1028
NlaIV GGNNCC 6 cut(s) 157, 213, 369, 556, 1000, 1075
NmuCI GTSAC 1 cut(s) 638
NspI RCATGY 1 cut(s) 754
PagI TCATGA 1 cut(s) 1024
PaqCI CACCTGC 1 cut(s) 722
PciI ACATGT 1 cut(s) 750
PctI GAATGC 1 cut(s) 50
PdiI GCCGGC 1 cut(s) 1059
PdmI GAANNNNTTC 1 cut(s) 847
PfeI GAWTC 1 cut(s) 1181
PflMI CCANNNNNTGG 1 cut(s) 24
PleI GAGTC 2 cut(s) 264, 633
PpsI GAGTC 2 cut(s) 264, 633
PpuMI RGGWCCY 1 cut(s) 212
PscI ACATGT 1 cut(s) 750
PshBI ATTAAT 1 cut(s) 381
Psp124BI GAGCTC 3 cut(s) 677, 986, 1175
Psp5II RGGWCCY 1 cut(s) 212
PspN4I GGNNCC 6 cut(s) 157, 213, 369, 556, 1000, 1075
PspPI GGNCC 3 cut(s) 75, 212, 297
PspPPI RGGWCCY 1 cut(s) 212
RsaI GTAC 4 cut(s) 157, 565, 596, 711
RsaNI GTAC 4 cut(s) 156, 564, 595, 710
RseI CAYNNNNRTG 1 cut(s) 726
Rsr2I CGGWCCG 1 cut(s) 297
RsrII CGGWCCG 1 cut(s) 297
SacI GAGCTC 3 cut(s) 677, 986, 1175
SacII CCGCGG 1 cut(s) 879
SaqAI TTAA 4 cut(s) 35, 381, 507, 1091
Sau3AI GATC 7 cut(s) 223, 310, 415, 466, 586, 664, 1158
Sau96I GGNCC 3 cut(s) 75, 212, 297
ScaI AGTACT 1 cut(s) 565
SchI GAGTC 2 cut(s) 264, 634
ScrFI CCNGG 3 cut(s) 295, 1003, 1078
SduI GDGCHC 4 cut(s) 677, 986, 1050, 1175
SfaNI GCATC 2 cut(s) 76, 444
SfcI CTRYAG 1 cut(s) 697
Sfr303I CCGCGG 1 cut(s) 879
SgrAI CRCCGGYG 1 cut(s) 548
SgrBI CCGCGG 1 cut(s) 879
SinI GGWCC 2 cut(s) 212, 297
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 705
SmoI CTYRAG 1 cut(s) 705
Sse9I AATT 5 cut(s) 36, 440, 458, 901, 1231
SspMI CTAG 3 cut(s) 173, 396, 1095
SstI GAGCTC 3 cut(s) 677, 986, 1175
StyD4I CCNGG 3 cut(s) 293, 1001, 1076
StyI CCWWGG 4 cut(s) 133, 333, 445, 1176
TaaI ACNGT 4 cut(s) 59, 306, 426, 602
TaiI ACGT 1 cut(s) 1032
TaqI TCGA 5 cut(s) 309, 623, 803, 854, 1161
TasI AATT 5 cut(s) 36, 440, 458, 901, 1231
TatI WGTACW 3 cut(s) 563, 594, 709
TauI GCSGC 7 cut(s) 282, 288, 782, 878, 881, 884, 912
TfiI GAWTC 1 cut(s) 1181
Tru1I TTAA 4 cut(s) 35, 381, 507, 1091
Tru9I TTAA 4 cut(s) 35, 381, 507, 1091
TscAI CASTG 5 cut(s) 29, 96, 172, 934, 1021
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 8 cut(s) 129, 138, 254, 282, 737, 766, 971, 1196
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 5 cut(s) 57, 367, 569, 974, 1013
TspRI CASTG 5 cut(s) 29, 96, 172, 934, 1021
Van91I CCANNNNNTGG 1 cut(s) 24
VpaK11BI GGWCC 2 cut(s) 212, 297
VspI ATTAAT 1 cut(s) 381
XapI RAATTY 1 cut(s) 1231
XceI RCATGY 1 cut(s) 754
XmnI GAANNNNTTC 1 cut(s) 847
XspI CTAG 3 cut(s) 173, 396, 1095
ZrmI AGTACT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.