Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010977

Physical Location & Seq

Genomic Coordinates Reverse (-)

80545292 .. 80555800

Gene Structure 10509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG469800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3006 bp

ATGGCGTCGAAGTTCGGGTTGGCCGGCGGGATACCGGAGCGGCGGGTCCGGCCCATTTGGGACGCCATCGATTCTCGCCAATTCAAAAACGCTCTCAAGCTCGTCACCGCTCTCCTCTCCAAGTTTCCCAATTCCCCTTACTGTCTGGCGCTTAAAGCTCTCATCCTGGAAAGGATGGGGAAATCGGAAGAAGCATTGTCGCTTTGCCTCAACGCCAAGGAACATTTGCACAAAAACGACTCCGTTTTGATGGACGATCTCACTCTCAGCACCTTGCAAATCGTCTTCCAACGCCTCGATCACTTGGAAATGGCAACCAGTTGTTACGAATATGCTTGCGGTAAATTTCCGAGCAATTTGGAGCTGATGATGGGGCTCTTTAACTGCTATGTTCGCGAATACTCGTTTGTCAAGCAGCAACAGACAGCTATAAGAATGTACAAACTTGTTGGCGAGGAGAGGTTTTTGCTCTGGGCTGTGTGTAGCATCCAGTTACAGGTGTTTTGTGGAAACGGAGGAGAAAAGCTGCTACTCTTAGCTGAAGGCTTAGTGAAGAAGCATGTTGCCTCTCATAGCTTGCATGAGCCTGAAGCTCTCATGGTCTATATTTCCATATTGGAACAACAAGCAAAGTATGGGGATGCTTTGGAGATTCTCTCTGGTAAATTAGGATCGCTTTTACTGGTTGAAGTTGATAAGCTACGCATACAGGGGAGGCTGCTTGCTCGGGTGGGTGACTACGCTGCTGCCGCCATAATATTTCAAAAAATTCTCGAACTATGTCCTGATGATTGGGAATGTTTCCTACATTATCTAGGGTGTTTGCTGGAGGATGACAGCAATTGGTGCAATAGGGCCATAACAGATCCAATTCATCCTCCGAAATTTGTCGAGTGCAAGATTTCAAACTTGACAGATGAAGTGTTTGATTCTCGTATGTCAAATGCATCAGAATTTGTACAAAAGTTACAAGGAAATACTGGCAATAATTTTGCAAGGTGTCCGTACTTGGCAAATATTGAAATTGAAAGGAGAAAGTGCTTACATGGCAAGGGGGATGATGGCAAGTTAATGGAGGCTCTAATCCAGTACTTTTTTGGGTTTGGTCACTTGGCCTGCTTCACTTCTGATGTTGAGATGTTTCTTGAAGTCTTAACTCCTGATAAGAAGGCAGAACTCTTGGGGAAGTTAAGGGAAAGTTCTGCCTCCATTTCAGCTGTGCCAGCAAAAGTACTTGGGCAGTCAATAACACTCTTTAAAATTCAAGAACTGATCGGAAACATGTCCAAGCTTACTGTTGTTGAACTTGAGGGCTCTGTTGTGCAGATGGTGGAGATGTACTGTAAAAACCTACCACTTTCAAAGGACTTGGATTCTCAAGAGAGTATGCATGGGGAAGAGCTGCTATCACTAGCTTGCAATGTATTGATTCAGTTATACTGGCGCACCAGGAATGTTGGCTACTTTGTTGAGGCAATCATGTTGTTGGAGTTTGGCTTGACTATACGAAGACATGTATGGCAGTACAAGATCTTGTTGCTGCATTTGTATTCCCACTTGGGTGCCCTTTCTCTGGCATATGAATGGTTCAAATCACTCGATGTTAAAAATATCTTGATGGAAACTGTGTCACACCACATTTTACCCCAGATGCTGGTGTCTCCCCTCTGGGTAGATATAAATAATCTGCTAAAGGATTATCTCAAGTTTATGGATGACCATTTGAGAGAATCAGCGGATCTTACGTTTCTTGCCTATCGCCATAGAAATTACTCAAAAGTAATTGAATTTGTCCAGTTTAAAGAGCGACTACAACATTCTAATCAGTATCTAGTGGCGAGGGTTGAAGGACCCATTCTTCAGTTAAAGCAGAATGCAGTTAACATTGAAGAGGAGGAGGCGGTTCTTGAAAGCTTGAAATGTGGTATTCACTTTGTTGAACTCTCTAATGAGATTGGATCCAAGTCTCTGACCTTCAATGAAGATTTGCAGTCACGCCCCTGGTGGGCACCAACTTCAGAGAGAAACTATCTTTTAGGTCCTTATGAAGGAGTATCATACTATCCCAGAGAGAACTCGATGACAGAAAGGGAGGCAAATGTACGGAGCATAATTGAGAGGAAATCTCTTCTTCCTCGGATGATTTATCTGTCCATACAGAGCGCTTCAACTTCACTCAAGGAAAATCTGGAAGTCAATGGGTCAGTGTCTGACCCTAAAATCCCCTCAGAGCTGAAGATTTTGCTTGAGCGATATGCAAAGATGTTGGGATATTCATTCACTGATGCAATAGAAGTGGTCTTGGGAGTTTCTGGTGGCCAAAAGTCTTTTGAGGTCTTTGGTTCGGACTTGATTGACTGGATAAACTTTTCTGTGTTTCTGAATGCATGGAACTTGAGTTCCCATGAGATTGGGCTGGCAAATGGCCGTTGTGCGGATTCTATATTGGAGAAGTATGTTTCAGATAAAGTTAGCTCCATGGAGACTCTAATTACCTCTCCTTGGGTTGATCTTCCAATTCTGGTACAGTTAGTTACAGAATCGTTGGCCTGGCATGGTCTTGTAATTCAATCTTGTGTTCGTTCATGTTTCCCATCGGGAAAGAAGAAGAAGAAAACTGGATTTGCAGATCAGTCCTGTCTGTCTCGTATCCGTGATTCAGTCTTGTCTTTATGCAATACTCTAGAAAAGGTTAGGAAATGGTTAAAAGAACAGATCAACAGGCCAGAGGATGAAAATATGGAGACTCTACTTTCCTCTTTGCGGAAGAAAGAACAGATCGGGGGACCTGGACAGGTTTTCCAGATTATAGAAACTTTTACCTCATCAATACATGACACAGAGCTTGGTGAGAGAATTTCCCAATCATTGAAGTCTTGGAGTCATGTTGATGTTGCAAGGAAGATAGTTGCTGGGAAGTGTACAGTACTGTCCGAGTTTCTCCGAATTTGTGATTCGAAATCAAAGTTGTTTCAAGCACTGAAACAGCAGATAGCTCAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0005911 GO:0006464 GO:0006473 GO:0006474 GO:0006807 GO:0006810 GO:0006897 GO:0006909 GO:0006911 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010324 GO:0010467 GO:0016043 GO:0016192 GO:0017196 GO:0018193 GO:0018206 GO:0019538 GO:0030054 GO:0031248 GO:0031365 GO:0031414 GO:0031416 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051604 GO:0055044 GO:0061024 GO:0071704 GO:0071840 GO:0098657 GO:0099024 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NatB_MDM20

Protein Analysis

1001

Amino Acids

113.59

Weight (kDa)

6.17

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NatB_MDM20	PF09797	307 - 625	4.1e-57	N-acetyltransferase B complex (NatB) non catalytic subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58450 AT5G58450
fragaria_vesca	FvH4_3g39760
malus_domestica	MD03G1056500.v1.1 MD11G1058300.v1.1
prunus_persica	Prupe.6G048400_v2.0.a1
pyrus_communis	pycom03g04480 pycom11g04830
rosa_chinensis	RchiOBHm_Chr5g0071641
rosa_laevigata	RLG00000036235
rosa_multiflora	Rmu_sc0005745.1_g000032
rosa_roxburghii	Rroxscaffold_1G00009550
rosa_rugosa	Rorug05G0413800 Rorug05G0413800 Rorug05G0413800
rosa_samantha	Rh5AG469800 Rh5BG489100 Rh5CG513100 Rh5DG499700
rosa_wichuraiana	Rw5G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1562, 2008
AccB7I	CCANNNNNTGG	1 cut(s)	1654
AccBSI	CCGCTC	2 cut(s)	40, 110
AccII	CGCG	1 cut(s)	396
AclWI	GGATC	5 cut(s)	679, 860, 1746, 1953, 1966
AcoI	YGGCCR	3 cut(s)	21, 2317, 2425
AcsI	RAATTY	8 cut(s)	344, 768, 884, 953, 1260, 1787, 2856, 2946
AcuI	CTGAAG	5 cut(s)	561, 609, 1844, 2001, 2255
AcyI	GRCGYC	2 cut(s)	5, 63
AfeI	AGCGCT	1 cut(s)	2164
AfiI	CCNNNNNNNGG	8 cut(s)	496, 1573, 1654, 2005, 2048, 2434, 2502, 2763
AflIII	ACRYGT	2 cut(s)	1281, 1513
AjnI	CCWGG	5 cut(s)	165, 1448, 2000, 2549, 2788
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AleI	CACNNNNGTG	1 cut(s)	1560
AloI	GAACNNNNNNTCC	4 cut(s)	2383, 2384, 2415, 2416
Alw26I	GTCTC	5 cut(s)	1665, 1971, 2477, 2649, 2738
AlwI	GGATC	5 cut(s)	679, 860, 1746, 1953, 1966
AlwNI	CAGNNNCTG	2 cut(s)	1654, 2210
Ama87I	CYCGRG	1 cut(s)	726
Aor51HI	AGCGCT	1 cut(s)	2164
AoxI	GGCC	8 cut(s)	21, 50, 855, 1113, 2317, 2425, 2547, 2723
ApeKI	GCWGC	7 cut(s)	415, 526, 718, 743, 746, 1402, 1540
ApoI	RAATTY	8 cut(s)	344, 768, 884, 953, 1260, 1787, 2856, 2946
AspLEI	GCGC	3 cut(s)	151, 1446, 2165
AspS9I	GGNCC	6 cut(s)	46, 51, 855, 1850, 2039, 2786
AsuHPI	GGTGA	3 cut(s)	97, 746, 2861
AsuII	TTCGAA	1 cut(s)	2957
AvaI	CYCGRG	1 cut(s)	726
AvaII	GGWCC	4 cut(s)	46, 1850, 2039, 2786
BaeGI	GKGCMC	2 cut(s)	1567, 2011
BalI	TGGCCA	1 cut(s)	2319
BamHI	GGATCC	1 cut(s)	1958
BanI	GGYRCC	2 cut(s)	1562, 2008
BanII	GRGCYC	2 cut(s)	378, 1316
BbsI	GAAGAC	2 cut(s)	277, 1516
BbvI	GCAGC	7 cut(s)	427, 513, 705, 730, 733, 1389, 1527
BccI	CCATC	8 cut(s)	74, 169, 244, 364, 1055, 1321, 1612, 2602
BceAI	ACGGC	1 cut(s)	2412
BciT130I	CCWGG	5 cut(s)	167, 1450, 2002, 2551, 2790
BciVI	GTATCC	2 cut(s)	24, 2660
BcoDI	GTCTC	5 cut(s)	1665, 1971, 2477, 2649, 2738
BfaI	CTAG	4 cut(s)	815, 1412, 1832, 2684
BfoI	RGCGCY	2 cut(s)	152, 2166
BfuI	GTATCC	2 cut(s)	24, 2660
BglII	AGATCT	1 cut(s)	1530
BisI	GCNGC	9 cut(s)	41, 416, 527, 719, 744, 747, 750, 1403, 1541
BlsI	GCNGC	9 cut(s)	42, 417, 528, 720, 745, 748, 751, 1404, 1542
BmcAI	AGTACT	3 cut(s)	1091, 1233, 2928
Bme1390I	CCNGG	5 cut(s)	167, 1450, 2002, 2551, 2790
Bme18I	GGWCC	4 cut(s)	46, 1850, 2039, 2786
BmeT110I	CYCGRG	1 cut(s)	726
BmgT120I	GGNCC	6 cut(s)	46, 51, 855, 1850, 2039, 2786
BmiI	GGNNCC	6 cut(s)	47, 1564, 1852, 1960, 2010, 2787
BmrFI	CCNGG	5 cut(s)	167, 1450, 2002, 2551, 2790
BmsI	GCATC	5 cut(s)	495, 631, 956, 1641, 2275
BpiI	GAAGAC	2 cut(s)	277, 1516
BplI	GAGNNNNNCTC	4 cut(s)	641, 673, 2110, 2142
BpmI	CTGGAG	1 cut(s)	848
Bpu14I	TTCGAA	1 cut(s)	2957
BpuEI	CTTGAG	8 cut(s)	80, 1328, 1362, 1688, 2162, 2267, 2416, 2982
Bsa29I	ATCGAT	1 cut(s)	69
BsaHI	GRCGYC	2 cut(s)	5, 63
BsaJI	CCNNGG	5 cut(s)	216, 2000, 2135, 2478, 2501
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	8 cut(s)	496, 1573, 1654, 2005, 2048, 2434, 2502, 2763
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	9 cut(s)	318, 490, 687, 985, 1087, 1445, 1795, 2363, 2623
Bse3DI	GCAATG	1 cut(s)	1426
BseBI	CCWGG	5 cut(s)	167, 1450, 2002, 2551, 2790
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	5 cut(s)	216, 2000, 2135, 2478, 2501
BseLI	CCNNNNNNNGG	8 cut(s)	496, 1573, 1654, 2005, 2048, 2434, 2502, 2763
BseMI	GCAATG	1 cut(s)	1426
BseMII	CTCAG	2 cut(s)	280, 2241
BseNI	ACTGG	9 cut(s)	318, 490, 687, 985, 1087, 1445, 1795, 2363, 2623
BseRI	GAGGAG	5 cut(s)	104, 470, 531, 1907, 1910
BseSI	GKGCMC	2 cut(s)	1567, 2011
BseXI	GCAGC	7 cut(s)	427, 513, 705, 730, 733, 1389, 1527
BseYI	CCCAGC	1 cut(s)	2912
BsgI	GTGCAG	1 cut(s)	1343
Bsh1236I	CGCG	1 cut(s)	396
BshFI	GGCC	8 cut(s)	23, 52, 857, 1115, 2319, 2427, 2549, 2725
BshNI	GGYRCC	2 cut(s)	1562, 2008
BshVI	ATCGAT	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	3 cut(s)	24, 35, 49
BslFI	GGGAC	2 cut(s)	74, 2799
BslI	CCNNNNNNNGG	8 cut(s)	496, 1573, 1654, 2005, 2048, 2434, 2502, 2763
BsmAI	GTCTC	5 cut(s)	1665, 1971, 2477, 2649, 2738
BsmFI	GGGAC	2 cut(s)	74, 2799
BsmI	GAATGC	2 cut(s)	1879, 2389
BsnI	GGCC	8 cut(s)	23, 52, 857, 1115, 2319, 2427, 2549, 2725
BsoBI	CYCGRG	1 cut(s)	726
Bsp119I	TTCGAA	1 cut(s)	2957
Bsp1286I	GDGCHC	4 cut(s)	378, 1316, 1567, 2011
Bsp1407I	TGTACA	3 cut(s)	438, 958, 2921
Bsp19I	CCATGG	1 cut(s)	2478
Bsp68I	TCGCGA	1 cut(s)	396
BspANI	GGCC	8 cut(s)	23, 52, 857, 1115, 2319, 2427, 2549, 2725
BspCNI	CTCAG	2 cut(s)	279, 2240
BspDI	ATCGAT	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	396
BspLI	GGNNCC	6 cut(s)	47, 1564, 1852, 1960, 2010, 2787
BspPI	GGATC	5 cut(s)	679, 860, 1746, 1953, 1966
BspQI	GCTCTTC	1 cut(s)	1392
BspT104I	TTCGAA	1 cut(s)	2957
BspT107I	GGYRCC	2 cut(s)	1562, 2008
BsrBI	CCGCTC	2 cut(s)	40, 110
BsrDI	GCAATG	1 cut(s)	1426
BsrFI	RCCGGY	1 cut(s)	23
BsrGI	TGTACA	3 cut(s)	438, 958, 2921
BsrI	ACTGG	9 cut(s)	318, 490, 687, 985, 1087, 1445, 1795, 2363, 2623
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	5 cut(s)	216, 2000, 2135, 2478, 2501
BssNI	GRCGYC	2 cut(s)	5, 63
BssT1I	CCWWGG	3 cut(s)	216, 2478, 2501
Bst2UI	CCWGG	5 cut(s)	167, 1450, 2002, 2551, 2790
Bst4CI	ACNGT	7 cut(s)	143, 1297, 1343, 1627, 2529, 2926, 2931
Bst6I	CTCTTC	3 cut(s)	1392, 1884, 2133
BstACI	GRCGYC	2 cut(s)	5, 63
BstAPI	GCANNNNNTGC	1 cut(s)	846
BstAUI	TGTACA	3 cut(s)	438, 958, 2921
BstBI	TTCGAA	1 cut(s)	2957
BstC8I	GCNNGC	8 cut(s)	25, 337, 578, 723, 1117, 1224, 1417, 2418
BstDEI	CTNAG	4 cut(s)	266, 535, 547, 2227
BstDSI	CCRYGG	1 cut(s)	2478
BstENI	CCTNNNNNAGG	1 cut(s)	2046
BstFNI	CGCG	1 cut(s)	396
BstH2I	RGCGCY	2 cut(s)	152, 2166
BstHHI	GCGC	3 cut(s)	151, 1446, 2165
BstMAI	GTCTC	5 cut(s)	1665, 1971, 2477, 2649, 2738
BstMWI	GCNNNNNNNGC	7 cut(s)	49, 155, 393, 749, 846, 1047, 1223
BstNI	CCWGG	5 cut(s)	167, 1450, 2002, 2551, 2790
BstNSI	RCATGY	3 cut(s)	563, 1285, 1517
BstSCI	CCNGG	5 cut(s)	165, 1448, 2000, 2549, 2788
BstSLI	GKGCMC	2 cut(s)	1567, 2011
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	7 cut(s)	427, 513, 705, 730, 733, 1389, 1527
BstV2I	GAAGAC	2 cut(s)	277, 1516
BstX2I	RGATCY	4 cut(s)	865, 1530, 1738, 1958
BstXI	CCANNNNNNTGG	1 cut(s)	2411
BstYI	RGATCY	4 cut(s)	865, 1530, 1738, 1958
Bsu15I	ATCGAT	1 cut(s)	69
BsuI	GTATCC	2 cut(s)	24, 2660
BsuRI	GGCC	8 cut(s)	23, 52, 857, 1115, 2319, 2427, 2549, 2725
BsuTUI	ATCGAT	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	2478
BtsIMutI	CAGTG	3 cut(s)	2211, 2280, 2978
BtuMI	TCGCGA	1 cut(s)	396
Cac8I	GCNNGC	8 cut(s)	25, 337, 578, 723, 1117, 1224, 1417, 2418
CaiI	CAGNNNCTG	2 cut(s)	1654, 2210
CfoI	GCGC	3 cut(s)	151, 1446, 2165
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	6 cut(s)	46, 51, 855, 1850, 2039, 2786
ClaI	ATCGAT	1 cut(s)	69
CseI	GACGC	1 cut(s)	71
CspCI	CAANNNNNGTGG	2 cut(s)	2277, 2312
DdeI	CTNAG	4 cut(s)	266, 535, 547, 2227
DraI	TTTAAA	2 cut(s)	1258, 1801
EaeI	YGGCCR	3 cut(s)	21, 2317, 2425
Eam1104I	CTCTTC	3 cut(s)	1392, 1884, 2133
EarI	CTCTTC	3 cut(s)	1392, 1884, 2133
Eco130I	CCWWGG	3 cut(s)	216, 2478, 2501
Eco24I	GRGCYC	2 cut(s)	378, 1316
Eco47I	GGWCC	4 cut(s)	46, 1850, 2039, 2786
Eco47III	AGCGCT	1 cut(s)	2164
Eco57I	CTGAAG	5 cut(s)	561, 609, 1844, 2001, 2255
Eco88I	CYCGRG	1 cut(s)	726
EcoNI	CCTNNNNNAGG	1 cut(s)	2046
EcoO109I	RGGNCCY	3 cut(s)	1850, 2039, 2786
EcoRII	CCWGG	5 cut(s)	165, 1448, 2000, 2549, 2788
EcoT14I	CCWWGG	3 cut(s)	216, 2478, 2501
EcoT22I	ATGCAT	3 cut(s)	949, 1392, 2389
EcoT38I	GRGCYC	2 cut(s)	378, 1316
ErhI	CCWWGG	3 cut(s)	216, 2478, 2501
FaqI	GGGAC	2 cut(s)	74, 2799
FauI	CCCGC	2 cut(s)	20, 36
FauNDI	CATATG	1 cut(s)	1579
Fnu4HI	GCNGC	9 cut(s)	41, 416, 527, 719, 744, 747, 750, 1403, 1541
FriOI	GRGCYC	2 cut(s)	378, 1316
Fsp4HI	GCNGC	9 cut(s)	41, 416, 527, 719, 744, 747, 750, 1403, 1541
FspBI	CTAG	4 cut(s)	815, 1412, 1832, 2684
GlaI	GCGC	3 cut(s)	150, 1445, 2164
GluI	GCNGC	9 cut(s)	41, 416, 527, 719, 744, 747, 750, 1403, 1541
GsaI	CCCAGC	1 cut(s)	2916
GsuI	CTGGAG	1 cut(s)	848
HaeII	RGCGCY	2 cut(s)	152, 2166
HaeIII	GGCC	8 cut(s)	23, 52, 857, 1115, 2319, 2427, 2549, 2725
HapII	CCGG	3 cut(s)	24, 35, 49
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	3 cut(s)	151, 1446, 2165
Hin1I	GRCGYC	2 cut(s)	5, 63
Hin6I	GCGC	3 cut(s)	149, 1444, 2163
HinP1I	GCGC	3 cut(s)	149, 1444, 2163
HincII	GTYRAC	1 cut(s)	1882
HindII	GTYRAC	1 cut(s)	1882
HindIII	AAGCTT	2 cut(s)	1289, 1912
HpaI	GTTAAC	1 cut(s)	1882
HpaII	CCGG	3 cut(s)	24, 35, 49
HphI	GGTGA	3 cut(s)	97, 746, 2861
Hpy166II	GTNNAC	2 cut(s)	1882, 2922
Hpy8I	GTNNAC	2 cut(s)	1882, 2922
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	5 cut(s)	536, 1162, 1841, 1984, 2042
HpyCH4III	ACNGT	7 cut(s)	143, 1297, 1343, 1627, 2529, 2926, 2931
HpyCH4IV	ACGT	1 cut(s)	1745
HpyF10VI	GCNNNNNNNGC	7 cut(s)	49, 155, 393, 749, 846, 1047, 1223
HpyF3I	CTNAG	4 cut(s)	266, 535, 547, 2227
HpySE526I	ACGT	1 cut(s)	1745
Hsp92I	GRCGYC	2 cut(s)	5, 63
HspAI	GCGC	3 cut(s)	149, 1444, 2163
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
KspAI	GTTAAC	1 cut(s)	1882
LguI	GCTCTTC	1 cut(s)	1392
LmnI	GCTCC	4 cut(s)	37, 361, 2106, 2480
Lsp1109I	GCAGC	7 cut(s)	427, 513, 705, 730, 733, 1389, 1527
LweI	GCATC	5 cut(s)	495, 631, 956, 1641, 2275
MaeI	CTAG	4 cut(s)	815, 1412, 1832, 2684
MaeII	ACGT	1 cut(s)	1745
MaeIII	GTNAC	9 cut(s)	103, 323, 492, 734, 966, 1106, 1629, 1992, 2533
MbiI	CCGCTC	2 cut(s)	40, 110
MfeI	CAATTG	1 cut(s)	841
MflI	RGATCY	4 cut(s)	865, 1530, 1738, 1958
MhlI	GDGCHC	4 cut(s)	378, 1316, 1567, 2011
MlsI	TGGCCA	1 cut(s)	2319
MluNI	TGGCCA	1 cut(s)	2319
MlyI	GAGTC	4 cut(s)	233, 2479, 2740, 2890
MmeI	TCCRAC	2 cut(s)	313, 1467
Mox20I	TGGCCA	1 cut(s)	2319
Mph1103I	ATGCAT	3 cut(s)	949, 1392, 2389
MroNI	GCCGGC	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	2319
MslI	CAYNNNNRTG	3 cut(s)	1560, 1582, 2889
Msp20I	TGGCCA	1 cut(s)	2319
MspA1I	CMGCKG	2 cut(s)	1217, 1736
MspI	CCGG	3 cut(s)	24, 35, 49
MspR9I	CCNGG	5 cut(s)	167, 1450, 2002, 2551, 2790
MunI	CAATTG	1 cut(s)	841
Mva1269I	GAATGC	2 cut(s)	1879, 2389
MvaI	CCWGG	5 cut(s)	167, 1450, 2002, 2551, 2790
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	7 cut(s)	49, 155, 393, 749, 846, 1047, 1223
NaeI	GCCGGC	1 cut(s)	25
NcoI	CCATGG	1 cut(s)	2478
NdeI	CATATG	1 cut(s)	1579
NgoMIV	GCCGGC	1 cut(s)	23
NlaIV	GGNNCC	6 cut(s)	47, 1564, 1852, 1960, 2010, 2787
NmuCI	GTSAC	5 cut(s)	103, 734, 1106, 1629, 1992
NruI	TCGCGA	1 cut(s)	396
NsiI	ATGCAT	3 cut(s)	949, 1392, 2389
NspI	RCATGY	3 cut(s)	563, 1285, 1517
NspV	TTCGAA	1 cut(s)	2957
OliI	CACNNNNGTG	1 cut(s)	1560
PciI	ACATGT	2 cut(s)	1281, 1513
PciSI	GCTCTTC	1 cut(s)	1392
PctI	GAATGC	2 cut(s)	1879, 2389
PdiI	GCCGGC	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	1654
PfoI	TCCNGGA	1 cut(s)	165
PkrI	GCNGC	9 cut(s)	42, 417, 528, 720, 745, 748, 751, 1404, 1542
PleI	GAGTC	4 cut(s)	233, 2479, 2740, 2889
PpsI	GAGTC	4 cut(s)	233, 2479, 2740, 2889
PpuMI	RGGWCCY	3 cut(s)	1850, 2039, 2786
PscI	ACATGT	2 cut(s)	1281, 1513
Psp5II	RGGWCCY	3 cut(s)	1850, 2039, 2786
Psp6I	CCWGG	5 cut(s)	165, 1448, 2000, 2549, 2788
PspFI	CCCAGC	1 cut(s)	2912
PspGI	CCWGG	5 cut(s)	165, 1448, 2000, 2549, 2788
PspN4I	GGNNCC	6 cut(s)	47, 1564, 1852, 1960, 2010, 2787
PspPI	GGNCC	6 cut(s)	46, 51, 855, 1850, 2039, 2786
PspPPI	RGGWCCY	3 cut(s)	1850, 2039, 2786
PstNI	CAGNNNCTG	2 cut(s)	1654, 2210
PsuI	RGATCY	4 cut(s)	865, 1530, 1738, 1958
PvuII	CAGCTG	1 cut(s)	1217
RruI	TCGCGA	1 cut(s)	396
RseI	CAYNNNNRTG	3 cut(s)	1560, 1582, 2889
SapI	GCTCTTC	1 cut(s)	1392
SatI	GCNGC	9 cut(s)	41, 416, 527, 719, 744, 747, 750, 1403, 1541
Sau96I	GGNCC	6 cut(s)	46, 51, 855, 1850, 2039, 2786
ScaI	AGTACT	3 cut(s)	1091, 1233, 2928
SchI	GAGTC	4 cut(s)	233, 2479, 2740, 2890
ScrFI	CCNGG	5 cut(s)	167, 1450, 2002, 2551, 2790
SduI	GDGCHC	4 cut(s)	378, 1316, 1567, 2011
SfaNI	GCATC	5 cut(s)	495, 631, 956, 1641, 2275
SfuI	TTCGAA	1 cut(s)	2957
SinI	GGWCC	4 cut(s)	46, 1850, 2039, 2786
SmiMI	CAYNNNNRTG	3 cut(s)	1560, 1582, 2889
SmlI	CTYRAG	8 cut(s)	95, 1307, 1377, 1703, 2177, 2246, 2395, 2997
SmoI	CTYRAG	8 cut(s)	95, 1307, 1377, 1703, 2177, 2246, 2395, 2997
SspI	AATATT	2 cut(s)	759, 1018
SspMI	CTAG	4 cut(s)	815, 1412, 1832, 2684
StyD4I	CCNGG	5 cut(s)	165, 1448, 2000, 2549, 2788
StyI	CCWWGG	3 cut(s)	216, 2478, 2501
TaaI	ACNGT	7 cut(s)	143, 1297, 1343, 1627, 2529, 2926, 2931
TaiI	ACGT	1 cut(s)	1748
TaqI	TCGA	8 cut(s)	8, 69, 297, 774, 891, 1599, 2078, 2957
TatI	WGTACW	8 cut(s)	438, 958, 1089, 1231, 1338, 1524, 2921, 2926
TauI	GCSGC	2 cut(s)	43, 752
TscAI	CASTG	3 cut(s)	2211, 2287, 2985
TseFI	GTSAC	5 cut(s)	103, 734, 1106, 1629, 1992
TseI	GCWGC	7 cut(s)	415, 526, 718, 743, 746, 1402, 1540
Tsp45I	GTSAC	5 cut(s)	103, 734, 1106, 1629, 1992
TspDTI	ATGAA	8 cut(s)	863, 933, 1596, 1995, 2061, 2265, 2574, 2748
TspGWI	ACGGA	5 cut(s)	232, 528, 993, 2119, 2642
TspRI	CASTG	3 cut(s)	2211, 2287, 2985
Van91I	CCANNNNNTGG	1 cut(s)	1654
VpaK11BI	GGWCC	4 cut(s)	46, 1850, 2039, 2786
XagI	CCTNNNNNAGG	1 cut(s)	2046
XapI	RAATTY	8 cut(s)	344, 768, 884, 953, 1260, 1787, 2856, 2946
XbaI	TCTAGA	1 cut(s)	2683
XceI	RCATGY	3 cut(s)	563, 1285, 1517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1094
XspI	CTAG	4 cut(s)	815, 1412, 1832, 2684
ZrmI	AGTACT	3 cut(s)	1091, 1233, 2928
Zsp2I	ATGCAT	3 cut(s)	949, 1392, 2389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.