Rh5BG034500

Ubiquitin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0019549
Physical Location & Seq
Reverse (-)
2409105 .. 2411499
2395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG034500.1

Sequence Viewer

Length: 1167 bp
ATGTTATTTTGTTTATTGCAGATGCAAATTTTCGTGAAGACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTCTGACACCATTGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTAGCTGACTACAACATCCAAAAGGAGTCAACCCTCCACTTGGTTCTTCGTCTGCGTGGTGGTATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATCACTCTTGAGGTTGAGAGCTCTGACACCATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCAGACTATAACATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCTTGGAGGTTGAGAGCTCAGACACCATTGACAACGTAAAGGCTAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAGCAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTGCAGACTATAACATCCAGAAGGAATCCACCCTTCATTTGGTGCTTCGTCTCCGTGGGGGTATGCAAATTTTTGTGAAGACCTTGACTGGAAAGACCATCACCTTGGAGGTGGAGAGCTCAGACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAGCAGAGGCTTATCTTTGCAGGAAAGCAGCTCGAGGATGGCCGGACCCTTGCTGATTATAACATCCAGAAGGAATCCACCCTTCATTTGGTGCTCCGTCTTCGTGGTGGTATGCAGATTTTTGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCTCAGACACCATTGATAATGTGAAGGCTAAGATTCAAGACAAGGAGGGGATCCCACCAGACCAGCAGAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTTGCAGACTACAACATCCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGTCTCCGTGGTGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

388

Amino Acids

43.55

Weight (kDa)

6.99

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 8 - 78 8.7e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 10 - 81 1.1e-31 Ubiquitin family
Rad60-SLD PF11976 84 - 154 8.7e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 86 - 157 1.1e-31 Ubiquitin family
Rad60-SLD PF11976 160 - 230 8.7e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 162 - 233 1.1e-31 Ubiquitin family
Rad60-SLD PF11976 236 - 306 8.7e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 238 - 309 1.1e-31 Ubiquitin family
Rad60-SLD PF11976 312 - 382 8.7e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 314 - 385 1.1e-31 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65350
fragaria_vesca FvH4_6g15622
prunus_persica Prupe.6G238900_v2.0.a1
pyrus_communis pycom05g31060
rosa_chinensis RchiOBHm_Chr3g0469291
rosa_samantha Rh5BG034500 Rh5CG290800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 882
AccI GTMKAC 1 cut(s) 1127
AciI CCGC 1 cut(s) 637
AclI AACGTT 1 cut(s) 96
AclWI GGATC 6 cut(s) 103, 331, 559, 787, 1033, 1046
AcoI YGGCCR 3 cut(s) 178, 634, 862
AcsI RAATTY 3 cut(s) 27, 126, 711
AdeI CACNNNGTG 1 cut(s) 457
AfaI GTAC 1 cut(s) 1096
AgsI TTSAA 1 cut(s) 1025
AjnI CCWGG 3 cut(s) 111, 339, 795
Alw21I GWGCWC 5 cut(s) 308, 536, 764, 918, 992
Alw26I GTCTC 3 cut(s) 470, 698, 1154
AlwI GGATC 6 cut(s) 103, 331, 559, 787, 1033, 1046
AlwNI CAGNNNCTG 1 cut(s) 148
Ama87I CYCGRG 2 cut(s) 854, 1082
AoxI GGCC 5 cut(s) 102, 178, 330, 634, 862
ApeKI GCWGC 6 cut(s) 142, 166, 394, 622, 850, 1078
ApoI RAATTY 3 cut(s) 27, 126, 711
Asp700I GAANNNNTTC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 867
AsuHPI GGTGA 6 cut(s) 37, 52, 508, 736, 964, 1127
AvaI CYCGRG 2 cut(s) 854, 1082
AvaII GGWCC 1 cut(s) 867
BamHI GGATCC 1 cut(s) 1038
BanII GRGCYC 4 cut(s) 308, 536, 764, 992
BbsI GAAGAC 5 cut(s) 44, 69, 728, 914, 971
Bbv12I GWGCWC 5 cut(s) 308, 536, 764, 918, 992
BbvI GCAGC 6 cut(s) 154, 178, 406, 634, 862, 1090
BccI CCATC 8 cut(s) 170, 293, 521, 626, 749, 854, 977, 1082
BcgI CGANNNNNNTGC 2 cut(s) 1063, 1097
BciT130I CCWGG 3 cut(s) 113, 341, 797
BciVI GTATCC 2 cut(s) 593, 821
BcoDI GTCTC 3 cut(s) 470, 698, 1154
BfaI CTAG 1 cut(s) 188
BfuI GTATCC 2 cut(s) 593, 821
BglII AGATCT 1 cut(s) 255
BisI GCNGC 7 cut(s) 143, 167, 395, 623, 637, 851, 1079
BlsI GCNGC 7 cut(s) 144, 168, 396, 624, 638, 852, 1080
Bme1390I CCNGG 3 cut(s) 113, 341, 797
Bme18I GGWCC 1 cut(s) 867
BmeT110I CYCGRG 2 cut(s) 854, 1082
BmgT120I GGNCC 1 cut(s) 867
BmiI GGNNCC 2 cut(s) 869, 1040
BmrFI CCNGG 3 cut(s) 113, 341, 797
BmsI GCATC 1 cut(s) 12
BpiI GAAGAC 5 cut(s) 44, 69, 728, 914, 971
BpuEI CTTGAG 6 cut(s) 86, 191, 314, 419, 647, 998
BsaJI CCNNGG 5 cut(s) 469, 519, 697, 747, 1153
BsaWI WCCGGW 1 cut(s) 275
Bse118I RCCGGY 3 cut(s) 47, 386, 1070
Bse1I ACTGG 2 cut(s) 508, 736
BseBI CCWGG 3 cut(s) 113, 341, 797
BseDI CCNNGG 5 cut(s) 469, 519, 697, 747, 1153
BseGI GGATG 9 cut(s) 181, 201, 429, 637, 657, 865, 885, 1093, 1113
BseMII CTCAG 3 cut(s) 549, 777, 1005
BseNI ACTGG 2 cut(s) 508, 736
BseXI GCAGC 6 cut(s) 154, 178, 406, 634, 862, 1090
Bsh1285I CGRYCG 1 cut(s) 409
BshFI GGCC 5 cut(s) 104, 180, 332, 636, 864
BsiEI CGRYCG 1 cut(s) 409
BsiHKAI GWGCWC 5 cut(s) 308, 536, 764, 918, 992
BsiHKCI CYCGRG 2 cut(s) 854, 1082
BsiSI CCGG 6 cut(s) 48, 276, 387, 615, 865, 1071
BsmAI GTCTC 3 cut(s) 470, 698, 1154
BsmBI CGTCTC 3 cut(s) 470, 698, 1154
BsmI GAATGC 1 cut(s) 354
BsnI GGCC 5 cut(s) 104, 180, 332, 636, 864
BsoBI CYCGRG 2 cut(s) 854, 1082
Bsp1286I GDGCHC 5 cut(s) 308, 536, 764, 918, 992
Bsp143I GATC 7 cut(s) 108, 150, 255, 336, 564, 792, 1038
BspACI CCGC 1 cut(s) 637
BspANI GGCC 5 cut(s) 104, 180, 332, 636, 864
BspCNI CTCAG 3 cut(s) 548, 776, 1004
BspLI GGNNCC 2 cut(s) 869, 1040
BspPI GGATC 6 cut(s) 103, 331, 559, 787, 1033, 1046
BsrFI RCCGGY 3 cut(s) 47, 386, 1070
BsrI ACTGG 2 cut(s) 508, 736
BssAI RCCGGY 3 cut(s) 47, 386, 1070
BssECI CCNNGG 5 cut(s) 469, 519, 697, 747, 1153
BssMI GATC 7 cut(s) 108, 150, 255, 336, 564, 792, 1038
BssT1I CCWWGG 2 cut(s) 519, 747
Bst2UI CCWGG 3 cut(s) 113, 341, 797
Bst4CI ACNGT 1 cut(s) 407
BstC8I GCNNGC 6 cut(s) 160, 164, 388, 392, 1072, 1076
BstDEI CTNAG 6 cut(s) 535, 561, 763, 789, 991, 1017
BstDSI CCRYGG 3 cut(s) 469, 697, 1153
BstF5I GGATG 9 cut(s) 181, 201, 429, 637, 657, 865, 885, 1093, 1113
BstKTI GATC 7 cut(s) 111, 153, 258, 339, 567, 795, 1041
BstMAI GTCTC 3 cut(s) 470, 698, 1154
BstMBI GATC 7 cut(s) 108, 150, 255, 336, 564, 792, 1038
BstMCI CGRYCG 1 cut(s) 409
BstNI CCWGG 3 cut(s) 113, 341, 797
BstSCI CCNGG 3 cut(s) 111, 339, 795
BstV1I GCAGC 6 cut(s) 154, 178, 406, 634, 862, 1090
BstV2I GAAGAC 5 cut(s) 44, 69, 728, 914, 971
BstX2I RGATCY 6 cut(s) 108, 255, 336, 564, 792, 1038
BstXI CCANNNNNNTGG 2 cut(s) 520, 748
BstYI RGATCY 6 cut(s) 108, 255, 336, 564, 792, 1038
BsuI GTATCC 2 cut(s) 593, 821
BsuRI GGCC 5 cut(s) 104, 180, 332, 636, 864
BtgI CCRYGG 3 cut(s) 469, 697, 1153
BtsCI GGATG 9 cut(s) 181, 201, 429, 637, 657, 865, 885, 1093, 1113
Cac8I GCNNGC 6 cut(s) 160, 164, 388, 392, 1072, 1076
CaiI CAGNNNCTG 1 cut(s) 148
Cfr10I RCCGGY 3 cut(s) 47, 386, 1070
Cfr13I GGNCC 1 cut(s) 867
CseI GACGC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 1095
CviQI GTAC 1 cut(s) 1095
DdeI CTNAG 6 cut(s) 535, 561, 763, 789, 991, 1017
DpnI GATC 7 cut(s) 110, 152, 257, 338, 566, 794, 1040
DpnII GATC 7 cut(s) 108, 150, 255, 336, 564, 792, 1038
DraIII CACNNNGTG 1 cut(s) 457
EaeI YGGCCR 3 cut(s) 178, 634, 862
Ecl136II GAGCTC 4 cut(s) 306, 534, 762, 990
Eco130I CCWWGG 2 cut(s) 519, 747
Eco24I GRGCYC 4 cut(s) 308, 536, 764, 992
Eco47I GGWCC 1 cut(s) 867
Eco53kI GAGCTC 4 cut(s) 306, 534, 762, 990
Eco88I CYCGRG 2 cut(s) 854, 1082
EcoICRI GAGCTC 4 cut(s) 306, 534, 762, 990
EcoRI GAATTC 1 cut(s) 126
EcoRII CCWGG 3 cut(s) 111, 339, 795
EcoT14I CCWWGG 2 cut(s) 519, 747
EcoT38I GRGCYC 4 cut(s) 308, 536, 764, 992
ErhI CCWWGG 2 cut(s) 519, 747
Esp3I CGTCTC 3 cut(s) 470, 698, 1154
FaiI YATR 7 cut(s) 251, 426, 479, 654, 707, 882, 935
FblI GTMKAC 1 cut(s) 1127
Fnu4HI GCNGC 7 cut(s) 143, 167, 395, 623, 637, 851, 1079
FokI GGATG 9 cut(s) 188, 188, 416, 644, 644, 872, 872, 1100, 1100
FriOI GRGCYC 4 cut(s) 308, 536, 764, 992
Fsp4HI GCNGC 7 cut(s) 143, 167, 395, 623, 637, 851, 1079
FspBI CTAG 1 cut(s) 188
GluI GCNGC 7 cut(s) 143, 167, 395, 623, 637, 851, 1079
HaeIII GGCC 5 cut(s) 104, 180, 332, 636, 864
HapII CCGG 6 cut(s) 48, 276, 387, 615, 865, 1071
HgaI GACGC 1 cut(s) 134
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 8 cut(s) 74, 212, 268, 440, 668, 896, 1021, 1124
HpaII CCGG 6 cut(s) 48, 276, 387, 615, 865, 1071
HphI GGTGA 6 cut(s) 37, 52, 508, 736, 964, 1127
Hpy166II GTNNAC 2 cut(s) 216, 1128
Hpy188I TCNGA 7 cut(s) 82, 150, 310, 538, 766, 994, 1166
Hpy8I GTNNAC 2 cut(s) 216, 1128
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4IV ACGT 3 cut(s) 96, 324, 552
HpyF3I CTNAG 6 cut(s) 535, 561, 763, 789, 991, 1017
HpySE526I ACGT 3 cut(s) 96, 324, 552
KroI GCCGGC 2 cut(s) 386, 1070
KroNI GCCGGC 2 cut(s) 388, 1072
Kzo9I GATC 7 cut(s) 108, 150, 255, 336, 564, 792, 1038
LmnI GCTCC 1 cut(s) 921
Lsp1109I GCAGC 6 cut(s) 154, 178, 406, 634, 862, 1090
LweI GCATC 1 cut(s) 12
MaeI CTAG 1 cut(s) 188
MaeII ACGT 3 cut(s) 96, 324, 552
MalI GATC 7 cut(s) 110, 152, 257, 338, 566, 794, 1040
MboI GATC 7 cut(s) 108, 150, 255, 336, 564, 792, 1038
MboII GAAGA 6 cut(s) 49, 69, 224, 733, 914, 976
MflI RGATCY 6 cut(s) 108, 255, 336, 564, 792, 1038
MhlI GDGCHC 5 cut(s) 308, 536, 764, 918, 992
MluCI AATT 3 cut(s) 27, 126, 711
MlyI GAGTC 4 cut(s) 83, 221, 262, 1133
MroNI GCCGGC 2 cut(s) 386, 1070
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 1 cut(s) 99
MspI CCGG 6 cut(s) 48, 276, 387, 615, 865, 1071
MspR9I CCNGG 3 cut(s) 113, 341, 797
Mva1269I GAATGC 1 cut(s) 354
MvaI CCWGG 3 cut(s) 113, 341, 797
NaeI GCCGGC 2 cut(s) 388, 1072
NdeII GATC 7 cut(s) 108, 150, 255, 336, 564, 792, 1038
NgoMIV GCCGGC 2 cut(s) 386, 1070
NlaIV GGNNCC 2 cut(s) 869, 1040
PaeR7I CTCGAG 2 cut(s) 854, 1082
PctI GAATGC 1 cut(s) 354
PdiI GCCGGC 2 cut(s) 388, 1072
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 4 cut(s) 440, 668, 896, 1021
PflFI GACNNNGTC 1 cut(s) 779
PfoI TCCNGGA 3 cut(s) 111, 339, 795
PkrI GCNGC 7 cut(s) 144, 168, 396, 624, 638, 852, 1080
PleI GAGTC 4 cut(s) 82, 220, 262, 1132
PpsI GAGTC 4 cut(s) 82, 220, 262, 1132
PsiI TTATAA 1 cut(s) 882
Psp124BI GAGCTC 4 cut(s) 308, 536, 764, 992
Psp1406I AACGTT 1 cut(s) 96
Psp6I CCWGG 3 cut(s) 111, 339, 795
PspGI CCWGG 3 cut(s) 111, 339, 795
PspN4I GGNNCC 2 cut(s) 869, 1040
PspPI GGNCC 1 cut(s) 867
PspXI VCTCGAGB 2 cut(s) 854, 1082
PstNI CAGNNNCTG 1 cut(s) 148
PsuI RGATCY 6 cut(s) 108, 255, 336, 564, 792, 1038
PsyI GACNNNGTC 1 cut(s) 779
RsaI GTAC 1 cut(s) 1096
RsaNI GTAC 1 cut(s) 1095
SacI GAGCTC 4 cut(s) 308, 536, 764, 992
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 7 cut(s) 143, 167, 395, 623, 637, 851, 1079
Sau3AI GATC 7 cut(s) 108, 150, 255, 336, 564, 792, 1038
Sau96I GGNCC 1 cut(s) 867
SchI GAGTC 4 cut(s) 83, 221, 262, 1133
ScrFI CCNGG 3 cut(s) 113, 341, 797
SduI GDGCHC 5 cut(s) 308, 536, 764, 918, 992
SfaNI GCATC 1 cut(s) 12
Sfr274I CTCGAG 2 cut(s) 854, 1082
SinI GGWCC 1 cut(s) 867
SlaI CTCGAG 2 cut(s) 854, 1082
SmlI CTYRAG 8 cut(s) 65, 170, 293, 398, 626, 854, 977, 1082
SmoI CTYRAG 8 cut(s) 65, 170, 293, 398, 626, 854, 977, 1082
Sse9I AATT 3 cut(s) 27, 126, 711
SsiI CCGC 1 cut(s) 637
SspMI CTAG 1 cut(s) 188
SstI GAGCTC 4 cut(s) 308, 536, 764, 992
StyD4I CCNGG 3 cut(s) 111, 339, 795
StyI CCWWGG 2 cut(s) 519, 747
TaaI ACNGT 1 cut(s) 407
TaiI ACGT 3 cut(s) 99, 327, 555
TaqI TCGA 2 cut(s) 855, 1083
TasI AATT 3 cut(s) 27, 126, 711
TauI GCSGC 1 cut(s) 639
TfiI GAWTC 4 cut(s) 440, 668, 896, 1021
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseI GCWGC 6 cut(s) 142, 166, 394, 622, 850, 1078
TspDTI ATGAA 2 cut(s) 668, 896
TspGWI ACGGA 5 cut(s) 458, 686, 908, 1136, 1142
Tth111I GACNNNGTC 1 cut(s) 779
VpaK11BI GGWCC 1 cut(s) 867
XapI RAATTY 3 cut(s) 27, 126, 711
XcmI CCANNNNNNNNNTGG 3 cut(s) 451, 679, 907
XhoI CTCGAG 2 cut(s) 854, 1082
XmiI GTMKAC 1 cut(s) 1127
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.