Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G20620 |
| fragaria_vesca | FvH4_3g21853 |
| prunus_persica | Prupe.4G025900_v2.0.a1 Prupe.6G238900_v2.0.a1 |
| pyrus_communis | pycom12g11970 |
| rosa_chinensis | RchiOBHm_Chr3g0469331 |
| rosa_laevigata | RLG00000024359 RLG00000031189 RLG00000033799 |
| rosa_samantha | Rh3AG149900 Rh3BG173500 Rh7AG256200 Rh7CG272600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1089 |
| AccI | GTMKAC | 2 cut(s) | 878, 1106 |
| AciI | CCGC | 3 cut(s) | 388, 626, 854 |
| AclWI | GGATC | 4 cut(s) | 82, 538, 1012, 1025 |
| AcoI | YGGCCR | 1 cut(s) | 385 |
| AcsI | RAATTY | 1 cut(s) | 105 |
| AfaI | GTAC | 1 cut(s) | 1075 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 97, 255, 325, 483, 553, 711, 939 |
| AgsI | TTSAA | 1 cut(s) | 1004 |
| AluBI | AGCT | 7 cut(s) | 57, 285, 513, 741, 969, 995, 1060 |
| AluI | AGCT | 7 cut(s) | 57, 285, 513, 741, 969, 995, 1060 |
| Alw21I | GWGCWC | 6 cut(s) | 59, 287, 515, 743, 897, 971 |
| AlwI | GGATC | 4 cut(s) | 82, 538, 1012, 1025 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 811 |
| Ama87I | CYCGRG | 1 cut(s) | 44 |
| AoxI | GGCC | 4 cut(s) | 81, 309, 385, 537 |
| ApoI | RAATTY | 1 cut(s) | 105 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 709, 741 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 789 |
| AspS9I | GGNCC | 1 cut(s) | 1027 |
| AsuC2I | CCSGG | 3 cut(s) | 256, 484, 1051 |
| AvaI | CYCGRG | 1 cut(s) | 44 |
| AvaII | GGWCC | 1 cut(s) | 1027 |
| BamHI | GGATCC | 1 cut(s) | 1017 |
| BanII | GRGCYC | 5 cut(s) | 59, 287, 515, 743, 971 |
| BbsI | GAAGAC | 5 cut(s) | 266, 707, 722, 935, 950 |
| Bbv12I | GWGCWC | 6 cut(s) | 59, 287, 515, 743, 897, 971 |
| BccI | CCATC | 4 cut(s) | 302, 833, 1061, 1122 |
| BceAI | ACGGC | 2 cut(s) | 172, 400 |
| BciVI | GTATCC | 1 cut(s) | 572 |
| BcnI | CCSGG | 3 cut(s) | 256, 484, 1051 |
| BfaI | CTAG | 1 cut(s) | 167 |
| BfuI | GTATCC | 1 cut(s) | 572 |
| BglII | AGATCT | 1 cut(s) | 234 |
| BisI | GCNGC | 1 cut(s) | 388 |
| BlsI | GCNGC | 1 cut(s) | 389 |
| Bme1390I | CCNGG | 3 cut(s) | 256, 484, 1051 |
| Bme18I | GGWCC | 1 cut(s) | 1027 |
| BmeT110I | CYCGRG | 1 cut(s) | 44 |
| BmgT120I | GGNCC | 1 cut(s) | 1027 |
| BmiI | GGNNCC | 1 cut(s) | 1019 |
| BmrFI | CCNGG | 3 cut(s) | 256, 484, 1051 |
| BmrI | ACTGGG | 1 cut(s) | 948 |
| BmsI | GCATC | 1 cut(s) | 342 |
| BmuI | ACTGGG | 1 cut(s) | 948 |
| BpiI | GAAGAC | 5 cut(s) | 266, 707, 722, 935, 950 |
| BpmI | CTGGAG | 3 cut(s) | 521, 780, 977 |
| Bpu10I | CCTNAGC | 1 cut(s) | 896 |
| BpuEI | CTTGAG | 1 cut(s) | 1082 |
| BpuMI | CCSGG | 3 cut(s) | 256, 484, 1051 |
| BsaWI | WCCGGW | 1 cut(s) | 1024 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 97, 255, 325, 483, 553, 711, 939 |
| Bse118I | RCCGGY | 4 cut(s) | 26, 137, 365, 593 |
| Bse1I | ACTGG | 1 cut(s) | 943 |
| BseGI | GGATG | 6 cut(s) | 180, 333, 636, 844, 864, 1072 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 97, 255, 325, 483, 553, 711, 939 |
| BseMII | CTCAG | 2 cut(s) | 665, 910 |
| BseNI | ACTGG | 1 cut(s) | 943 |
| BseX3I | CGGCCG | 1 cut(s) | 385 |
| BseYI | CCCAGC | 1 cut(s) | 821 |
| Bsh1285I | CGRYCG | 1 cut(s) | 388 |
| BshFI | GGCC | 4 cut(s) | 83, 311, 387, 539 |
| BsiEI | CGRYCG | 1 cut(s) | 388 |
| BsiHKAI | GWGCWC | 6 cut(s) | 59, 287, 515, 743, 897, 971 |
| BsiHKCI | CYCGRG | 1 cut(s) | 44 |
| BsiSI | CCGG | 8 cut(s) | 27, 138, 255, 366, 483, 594, 1025, 1050 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 97, 255, 325, 483, 553, 711, 939 |
| BsmI | GAATGC | 1 cut(s) | 789 |
| BsnI | GGCC | 4 cut(s) | 83, 311, 387, 539 |
| BsoBI | CYCGRG | 1 cut(s) | 44 |
| Bsp1286I | GDGCHC | 6 cut(s) | 59, 287, 515, 743, 897, 971 |
| BspACI | CCGC | 3 cut(s) | 388, 626, 854 |
| BspANI | GGCC | 4 cut(s) | 83, 311, 387, 539 |
| BspCNI | CTCAG | 2 cut(s) | 666, 909 |
| BspLI | GGNNCC | 1 cut(s) | 1019 |
| BspPI | GGATC | 4 cut(s) | 82, 538, 1012, 1025 |
| BsrFI | RCCGGY | 4 cut(s) | 26, 137, 365, 593 |
| BsrI | ACTGG | 1 cut(s) | 943 |
| BssAI | RCCGGY | 4 cut(s) | 26, 137, 365, 593 |
| Bst4CI | ACNGT | 1 cut(s) | 614 |
| Bst6I | CTCTTC | 2 cut(s) | 204, 888 |
| BstC8I | GCNNGC | 5 cut(s) | 139, 143, 367, 371, 914 |
| BstDEI | CTNAG | 4 cut(s) | 271, 674, 896, 996 |
| BstF5I | GGATG | 6 cut(s) | 180, 333, 636, 844, 864, 1072 |
| BstMCI | CGRYCG | 1 cut(s) | 388 |
| BstNSI | RCATGY | 1 cut(s) | 916 |
| BstSCI | CCNGG | 3 cut(s) | 254, 482, 1049 |
| BstV2I | GAAGAC | 5 cut(s) | 266, 707, 722, 935, 950 |
| BstX2I | RGATCY | 4 cut(s) | 87, 234, 543, 1017 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 955 |
| BstYI | RGATCY | 4 cut(s) | 87, 234, 543, 1017 |
| BstZI | CGGCCG | 1 cut(s) | 385 |
| BsuI | GTATCC | 1 cut(s) | 572 |
| BsuRI | GGCC | 4 cut(s) | 83, 311, 387, 539 |
| BtsCI | GGATG | 6 cut(s) | 180, 333, 636, 844, 864, 1072 |
| Cac8I | GCNNGC | 5 cut(s) | 139, 143, 367, 371, 914 |
| CaiI | CAGNNNCTG | 1 cut(s) | 811 |
| Cfr10I | RCCGGY | 4 cut(s) | 26, 137, 365, 593 |
| Cfr13I | GGNCC | 1 cut(s) | 1027 |
| CseI | GACGC | 1 cut(s) | 659 |
| Csp6I | GTAC | 1 cut(s) | 1074 |
| CviAII | CATG | 1 cut(s) | 913 |
| CviQI | GTAC | 1 cut(s) | 1074 |
| DdeI | CTNAG | 4 cut(s) | 271, 674, 896, 996 |
| EaeI | YGGCCR | 1 cut(s) | 385 |
| EagI | CGGCCG | 1 cut(s) | 385 |
| Eam1104I | CTCTTC | 2 cut(s) | 204, 888 |
| EarI | CTCTTC | 2 cut(s) | 204, 888 |
| EciI | GGCGGA | 1 cut(s) | 869 |
| Ecl136II | GAGCTC | 5 cut(s) | 57, 285, 513, 741, 969 |
| EclXI | CGGCCG | 1 cut(s) | 385 |
| Eco24I | GRGCYC | 5 cut(s) | 59, 287, 515, 743, 971 |
| Eco47I | GGWCC | 1 cut(s) | 1027 |
| Eco52I | CGGCCG | 1 cut(s) | 385 |
| Eco53kI | GAGCTC | 5 cut(s) | 57, 285, 513, 741, 969 |
| Eco88I | CYCGRG | 1 cut(s) | 44 |
| EcoICRI | GAGCTC | 5 cut(s) | 57, 285, 513, 741, 969 |
| EcoRI | GAATTC | 1 cut(s) | 105 |
| EcoT38I | GRGCYC | 5 cut(s) | 59, 287, 515, 743, 971 |
| FaeI | CATG | 1 cut(s) | 916 |
| FaiI | YATR | 6 cut(s) | 230, 266, 458, 686, 914, 1089 |
| FatI | CATG | 1 cut(s) | 912 |
| FblI | GTMKAC | 2 cut(s) | 878, 1106 |
| Fnu4HI | GCNGC | 1 cut(s) | 388 |
| FokI | GGATG | 6 cut(s) | 167, 320, 623, 851, 851, 1079 |
| FriOI | GRGCYC | 5 cut(s) | 59, 287, 515, 743, 971 |
| Fsp4HI | GCNGC | 1 cut(s) | 388 |
| FspBI | CTAG | 1 cut(s) | 167 |
| GluI | GCNGC | 1 cut(s) | 388 |
| GsaI | CCCAGC | 1 cut(s) | 825 |
| GsuI | CTGGAG | 3 cut(s) | 521, 780, 977 |
| HaeIII | GGCC | 4 cut(s) | 83, 311, 387, 539 |
| HapII | CCGG | 8 cut(s) | 27, 138, 255, 366, 483, 594, 1025, 1050 |
| HgaI | GACGC | 1 cut(s) | 659 |
| Hin1II | CATG | 1 cut(s) | 916 |
| HincII | GTYRAC | 2 cut(s) | 651, 879 |
| HindII | GTYRAC | 2 cut(s) | 651, 879 |
| HinfI | GANTC | 9 cut(s) | 191, 419, 647, 772, 847, 875, 880, 1000, 1103 |
| HpaII | CCGG | 8 cut(s) | 27, 138, 255, 366, 483, 594, 1025, 1050 |
| Hpy166II | GTNNAC | 3 cut(s) | 651, 879, 1107 |
| Hpy188I | TCNGA | 8 cut(s) | 61, 289, 443, 517, 675, 745, 973, 1148 |
| Hpy8I | GTNNAC | 3 cut(s) | 651, 879, 1107 |
| HpyAV | CCTTC | 7 cut(s) | 181, 301, 529, 757, 779, 837, 1133 |
| HpyCH4III | ACNGT | 1 cut(s) | 614 |
| HpyCH4IV | ACGT | 3 cut(s) | 75, 303, 531 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 232, 430, 460, 658, 688, 916, 1082 |
| HpyF3I | CTNAG | 4 cut(s) | 271, 674, 896, 996 |
| HpySE526I | ACGT | 3 cut(s) | 75, 303, 531 |
| Hsp92II | CATG | 1 cut(s) | 916 |
| KroI | GCCGGC | 2 cut(s) | 137, 365 |
| KroNI | GCCGGC | 2 cut(s) | 139, 367 |
| LmnI | GCTCC | 1 cut(s) | 518 |
| LweI | GCATC | 1 cut(s) | 342 |
| MaeI | CTAG | 1 cut(s) | 167 |
| MaeII | ACGT | 3 cut(s) | 75, 303, 531 |
| MfeI | CAATTG | 4 cut(s) | 146, 374, 602, 830 |
| MflI | RGATCY | 4 cut(s) | 87, 234, 543, 1017 |
| MhlI | GDGCHC | 6 cut(s) | 59, 287, 515, 743, 897, 971 |
| MluCI | AATT | 6 cut(s) | 105, 146, 374, 492, 602, 830 |
| MlyI | GAGTC | 5 cut(s) | 656, 841, 874, 884, 1112 |
| MroNI | GCCGGC | 2 cut(s) | 137, 365 |
| MroXI | GAANNNNTTC | 1 cut(s) | 789 |
| MspI | CCGG | 8 cut(s) | 27, 138, 255, 366, 483, 594, 1025, 1050 |
| MspR9I | CCNGG | 3 cut(s) | 256, 484, 1051 |
| MunI | CAATTG | 4 cut(s) | 146, 374, 602, 830 |
| Mva1269I | GAATGC | 1 cut(s) | 789 |
| NaeI | GCCGGC | 2 cut(s) | 139, 367 |
| NciI | CCSGG | 3 cut(s) | 256, 484, 1051 |
| NgoMIV | GCCGGC | 2 cut(s) | 137, 365 |
| NlaIII | CATG | 1 cut(s) | 916 |
| NlaIV | GGNNCC | 1 cut(s) | 1019 |
| NspI | RCATGY | 1 cut(s) | 916 |
| PaeI | GCATGC | 1 cut(s) | 916 |
| PaeR7I | CTCGAG | 1 cut(s) | 44 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 513 |
| PctI | GAATGC | 1 cut(s) | 789 |
| PdiI | GCCGGC | 2 cut(s) | 139, 367 |
| PdmI | GAANNNNTTC | 1 cut(s) | 789 |
| PfeI | GAWTC | 4 cut(s) | 191, 419, 772, 1000 |
| PflFI | GACNNNGTC | 2 cut(s) | 74, 986 |
| PkrI | GCNGC | 1 cut(s) | 389 |
| PleI | GAGTC | 5 cut(s) | 655, 841, 874, 883, 1111 |
| PpsI | GAGTC | 5 cut(s) | 655, 841, 874, 883, 1111 |
| PsiI | TTATAA | 1 cut(s) | 1089 |
| Psp124BI | GAGCTC | 5 cut(s) | 59, 287, 515, 743, 971 |
| PspFI | CCCAGC | 1 cut(s) | 821 |
| PspN4I | GGNNCC | 1 cut(s) | 1019 |
| PspPI | GGNCC | 1 cut(s) | 1027 |
| PstNI | CAGNNNCTG | 1 cut(s) | 811 |
| PsuI | RGATCY | 4 cut(s) | 87, 234, 543, 1017 |
| PsyI | GACNNNGTC | 2 cut(s) | 74, 986 |
| RsaI | GTAC | 1 cut(s) | 1075 |
| RsaNI | GTAC | 1 cut(s) | 1074 |
| SacI | GAGCTC | 5 cut(s) | 59, 287, 515, 743, 971 |
| SalI | GTCGAC | 1 cut(s) | 877 |
| SatI | GCNGC | 1 cut(s) | 388 |
| Sau96I | GGNCC | 1 cut(s) | 1027 |
| SchI | GAGTC | 5 cut(s) | 656, 841, 874, 884, 1112 |
| ScrFI | CCNGG | 3 cut(s) | 256, 484, 1051 |
| SduI | GDGCHC | 6 cut(s) | 59, 287, 515, 743, 897, 971 |
| SfaNI | GCATC | 1 cut(s) | 342 |
| Sfr274I | CTCGAG | 1 cut(s) | 44 |
| SinI | GGWCC | 1 cut(s) | 1027 |
| SlaI | CTCGAG | 1 cut(s) | 44 |
| SmlI | CTYRAG | 2 cut(s) | 44, 1061 |
| SmoI | CTYRAG | 2 cut(s) | 44, 1061 |
| SphI | GCATGC | 1 cut(s) | 916 |
| Sse9I | AATT | 6 cut(s) | 105, 146, 374, 492, 602, 830 |
| SsiI | CCGC | 3 cut(s) | 388, 626, 854 |
| SspMI | CTAG | 1 cut(s) | 167 |
| SstI | GAGCTC | 5 cut(s) | 59, 287, 515, 743, 971 |
| StyD4I | CCNGG | 3 cut(s) | 254, 482, 1049 |
| TaaI | ACNGT | 1 cut(s) | 614 |
| TaiI | ACGT | 3 cut(s) | 78, 306, 534 |
| TaqI | TCGA | 8 cut(s) | 45, 69, 279, 297, 422, 507, 735, 878 |
| TasI | AATT | 6 cut(s) | 105, 146, 374, 492, 602, 830 |
| TauI | GCSGC | 1 cut(s) | 390 |
| TfiI | GAWTC | 4 cut(s) | 191, 419, 772, 1000 |
| TspDTI | ATGAA | 1 cut(s) | 875 |
| Tth111I | GACNNNGTC | 2 cut(s) | 74, 986 |
| VpaK11BI | GGWCC | 1 cut(s) | 1027 |
| XapI | RAATTY | 1 cut(s) | 105 |
| XceI | RCATGY | 1 cut(s) | 916 |
| XhoI | CTCGAG | 1 cut(s) | 44 |
| XmiI | GTMKAC | 2 cut(s) | 878, 1106 |
| XmnI | GAANNNNTTC | 1 cut(s) | 789 |
| XspI | CTAG | 1 cut(s) | 167 |