RLG00000031189

Ubiquitin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017038
Physical Location & Seq
Reverse (-)
2801253 .. 2805022
3770 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031189

Sequence Viewer

Length: 1986 bp
ATGGATGTCACATTTGAACCCCAAAGAGGAAGGCCATCCTTCACCATTGAAATTGGTTACTTCGACACTGTCCTAGAGATCAAAGAAAAGGTTCAGAAATACCAAGGAATACCCGTTTCCCAGCAAACCCTAGTCTTCAACGGCCAAGTCCTCCACGACGAACGCGACGTTGCCTACTGTGAAATCCTCGACCAATCCAAGATTCAGCTCATTATTAATTCCGAATCTGATAAACATGCTACCAATGTCAAGCTAGAAGACTCATCCCCGCCCAAGAAGATCCAGCTCAATGTGAAGACCCCCACGTCCAAAATGCATGTCCCCATAGAAATGGACCCAAATGACACCGTGACCAAGTTGAGGGAGAAGATTCAAGGCTTGGAGCCGGTTCCTCTTAGCCGTTTGGTGCTGCATTACACTGGTAACGAACTACACGATCATCGATCTTTGCGTGAATGTGAGATTTCCGACAATGCAGAGATCGAGGTGAGCTTGAGACCGTCCCCAACAGCTGCTTCAGCTGGTGGGGCAATGGCGGTGTCCCCCGGGCCAAAAAATAAGTTGAAGCTGATGGTGCTGCCCAAATGCGGGACTAAAAAGATTCCAGTGGAGGTTAACGCATCGGATAATGTAGGGGAGCTGAGAAAGGAGCTGCAAAAGTTACACCAGAGGCTACATTTTCATCTGCCTCAAGAGAGCTATTTCTTCATCTATAAGCAGAATGTGATGGACGACGACAAGTCGTTTAGCCCTCGGCTCATCTTGTTCTTCGCACCCTTCAAATCTCTCTTTGTTTCAATCCCTCTCGAATTCTTCATCAAGCGCTCTCTCGCTCTCAAGATGCAAATTTTTGTGAAGACCCTCACTGGCAAGACTATCACCCTTGAGGTGGAGTCTTCTGATACTATTGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGAACCCTAGCTGACTACAACATCCAGAAGGAGTCAACCCTCCACTTGGTGCTTCGTCTCCGTGGTGGTATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATCACTCTTGAGGTTGAGAGCTCTGACACCATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTTGCAGACTATAACATCCAGAAGGAGTCAACCCTCCACTTGGTGCTTCGTCTCCGTGGTGGTATGCAGATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCTTGGAGGTTGAGAGCTCAGACACCATTGACAACGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAGCAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTGCAGACTATAACATCCAGAAGGAATCCACCCTTCATTTGGTGCTTCGTCTCCGTGGTGGTATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACCTTGGAGGTTGAGAGCTCTGACACCATTGACAACGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAGCAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTGCAGACTATAACATCCAGAAGGAATCCACCCTTCATTTGGTGCTCCGTCTTCGTGGTGGCATGCAGATTTTTGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTGGAGAGCTCAGACACCATTGATAATGTGAAGGCCAAGATTCAAGACAAGGAGGGGATCCCACCCGACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACTACAATATCCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGTCTCCGTGGTGGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

662

Amino Acids

74.51

Weight (kDa)

7.68

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 10 - 73 2.9e-16 Ubiquitin family
ubiquitin PF00240 96 - 167 3e-14 Ubiquitin family
Rad60-SLD PF11976 281 - 351 1.9e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 283 - 354 2.4e-31 Ubiquitin family
Rad60-SLD PF11976 357 - 427 1.9e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 359 - 430 2.4e-31 Ubiquitin family
Rad60-SLD PF11976 433 - 503 1.9e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 435 - 506 2.4e-31 Ubiquitin family
Rad60-SLD PF11976 509 - 579 1.9e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 511 - 582 2.4e-31 Ubiquitin family
Rad60-SLD PF11976 585 - 655 1.9e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 587 - 658 2.4e-31 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20620
fragaria_vesca FvH4_3g21853
prunus_persica Prupe.4G025900_v2.0.a1 Prupe.6G238900_v2.0.a1
pyrus_communis pycom12g11970
rosa_chinensis RchiOBHm_Chr3g0469331
rosa_laevigata RLG00000024359 RLG00000031189 RLG00000033799
rosa_samantha Rh3AG149900 Rh3BG173500 Rh7AG256200 Rh7CG272600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 304
AbsI CCTCGAGG 1 cut(s) 1796
AccI GTMKAC 1 cut(s) 1946
AccII CGCG 1 cut(s) 165
AciI CCGC 6 cut(s) 269, 536, 588, 1228, 1456, 1684
AclI AACGTT 1 cut(s) 915
AclWI GGATC 7 cut(s) 274, 922, 1150, 1378, 1606, 1852, 1865
AcoI YGGCCR 4 cut(s) 142, 1225, 1453, 1681
AcsI RAATTY 3 cut(s) 809, 846, 945
AcuI CTGAAG 1 cut(s) 501
AdeI CACNNNGTG 2 cut(s) 1048, 1276
AfaI GTAC 1 cut(s) 1915
AfeI AGCGCT 1 cut(s) 824
AgsI TTSAA 8 cut(s) 17, 50, 139, 374, 565, 781, 798, 1844
AhdI GACNNNNNGTC 1 cut(s) 739
AjiI CACGTC 1 cut(s) 306
AjnI CCWGG 3 cut(s) 930, 1158, 1917
AjuI GAANNNNNNNTTGG 4 cut(s) 186, 218, 499, 531
Alw21I GWGCWC 5 cut(s) 1127, 1355, 1583, 1737, 1811
Alw26I GTCTC 5 cut(s) 490, 1061, 1289, 1517, 1973
AlwI GGATC 7 cut(s) 274, 922, 1150, 1378, 1606, 1852, 1865
AlwNI CAGNNNCTG 1 cut(s) 967
Ama87I CYCGRG 3 cut(s) 545, 1796, 1901
Aor51HI AGCGCT 1 cut(s) 824
AoxI GGCC 9 cut(s) 32, 142, 548, 921, 1149, 1225, 1453, 1681, 1833
ApoI RAATTY 3 cut(s) 809, 846, 945
ArsI GACNNNNNNTTYG 2 cut(s) 303, 335
AseI ATTAAT 1 cut(s) 216
Asp700I GAANNNNTTC 2 cut(s) 90, 945
AspLEI GCGC 1 cut(s) 825
AspS9I GGNCC 2 cut(s) 334, 548
AsuC2I CCSGG 2 cut(s) 546, 547
AsuHPI GGTGA 7 cut(s) 34, 499, 871, 1327, 1555, 1783, 1946
AvaI CYCGRG 3 cut(s) 545, 1796, 1901
AvaII GGWCC 1 cut(s) 334
BamHI GGATCC 1 cut(s) 1857
BanII GRGCYC 4 cut(s) 1127, 1355, 1583, 1811
BbsI GAAGAC 7 cut(s) 127, 264, 302, 863, 888, 1733, 1790
Bbv12I GWGCWC 5 cut(s) 1127, 1355, 1583, 1737, 1811
BceAI ACGGC 3 cut(s) 157, 384, 1240
BcgI CGANNNNNNTGC 2 cut(s) 1882, 1916
BciT130I CCWGG 3 cut(s) 932, 1160, 1919
BciVI GTATCC 3 cut(s) 1184, 1412, 1640
BcnI CCSGG 2 cut(s) 546, 547
BcoDI GTCTC 5 cut(s) 490, 1061, 1289, 1517, 1973
BfaI CTAG 4 cut(s) 74, 131, 254, 1007
BfoI RGCGCY 1 cut(s) 826
BfuI GTATCC 3 cut(s) 1184, 1412, 1640
BglII AGATCT 3 cut(s) 1074, 1302, 1530
Bme1390I CCNGG 5 cut(s) 546, 547, 932, 1160, 1919
Bme18I GGWCC 1 cut(s) 334
BmeRI GACNNNNNGTC 1 cut(s) 739
BmeT110I CYCGRG 3 cut(s) 545, 1796, 1901
BmgBI CACGTC 1 cut(s) 306
BmgT120I GGNCC 2 cut(s) 334, 548
BmiI GGNNCC 4 cut(s) 336, 384, 390, 1859
BmrFI CCNGG 5 cut(s) 546, 547, 932, 1160, 1919
BmsI GCATC 2 cut(s) 629, 831
BpiI GAAGAC 7 cut(s) 127, 264, 302, 863, 888, 1733, 1790
BpuEI CTTGAG 9 cut(s) 514, 675, 821, 905, 1010, 1133, 1238, 1466, 1694
BpuMI CCSGG 2 cut(s) 546, 547
Bsa29I ATCGAT 1 cut(s) 442
BsaI GGTCTC 1 cut(s) 490
BsaWI WCCGGW 2 cut(s) 1094, 1550
Bse118I RCCGGY 2 cut(s) 385, 1205
Bse1I ACTGG 4 cut(s) 424, 605, 871, 1327
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 3 cut(s) 932, 1160, 1919
BseCI ATCGAT 1 cut(s) 442
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 3 cut(s) 632, 1368, 1824
BseNI ACTGG 4 cut(s) 424, 605, 871, 1327
BseX3I CGGCCG 1 cut(s) 1225
BseYI CCCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 1228
BshFI GGCC 9 cut(s) 34, 144, 550, 923, 1151, 1227, 1455, 1683, 1835
BshVI ATCGAT 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 1228
BsiHKAI GWGCWC 5 cut(s) 1127, 1355, 1583, 1737, 1811
BsiHKCI CYCGRG 3 cut(s) 545, 1796, 1901
BsiSI CCGG 7 cut(s) 386, 546, 1095, 1206, 1434, 1551, 1662
BslFI GGGAC 4 cut(s) 305, 487, 526, 604
BsmAI GTCTC 5 cut(s) 490, 1061, 1289, 1517, 1973
BsmBI CGTCTC 4 cut(s) 1061, 1289, 1517, 1973
BsmFI GGGAC 4 cut(s) 305, 487, 526, 604
BsnI GGCC 9 cut(s) 34, 144, 550, 923, 1151, 1227, 1455, 1683, 1835
Bso31I GGTCTC 1 cut(s) 490
BsoBI CYCGRG 3 cut(s) 545, 1796, 1901
Bsp1286I GDGCHC 5 cut(s) 1127, 1355, 1583, 1737, 1811
BspACI CCGC 6 cut(s) 269, 536, 588, 1228, 1456, 1684
BspANI GGCC 9 cut(s) 34, 144, 550, 923, 1151, 1227, 1455, 1683, 1835
BspCNI CTCAG 3 cut(s) 633, 1367, 1823
BspDI ATCGAT 1 cut(s) 442
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 4 cut(s) 336, 384, 390, 1859
BspPI GGATC 7 cut(s) 274, 922, 1150, 1378, 1606, 1852, 1865
BspTNI GGTCTC 1 cut(s) 490
BsrDI GCAATG 1 cut(s) 537
BsrFI RCCGGY 2 cut(s) 385, 1205
BsrI ACTGG 4 cut(s) 424, 605, 871, 1327
BssAI RCCGGY 2 cut(s) 385, 1205
BssT1I CCWWGG 3 cut(s) 103, 1338, 1566
Bst2UI CCWGG 3 cut(s) 932, 1160, 1919
Bst4CI ACNGT 4 cut(s) 70, 179, 349, 501
BstC8I GCNNGC 7 cut(s) 979, 983, 1207, 1211, 1754, 1891, 1895
BstDEI CTNAG 6 cut(s) 395, 641, 1354, 1380, 1608, 1810
BstDSI CCRYGG 4 cut(s) 1060, 1288, 1516, 1972
BstFNI CGCG 1 cut(s) 165
BstH2I RGCGCY 1 cut(s) 826
BstHHI GCGC 1 cut(s) 825
BstMAI GTCTC 5 cut(s) 490, 1061, 1289, 1517, 1973
BstMCI CGRYCG 1 cut(s) 1228
BstMWI GCNNNNNNNGC 3 cut(s) 518, 527, 574
BstNI CCWGG 3 cut(s) 932, 1160, 1919
BstNSI RCATGY 3 cut(s) 239, 320, 1756
BstSCI CCNGG 5 cut(s) 544, 545, 930, 1158, 1917
BstUI CGCG 1 cut(s) 165
BstV2I GAAGAC 7 cut(s) 127, 264, 302, 863, 888, 1733, 1790
BstX2I RGATCY 9 cut(s) 279, 927, 1074, 1155, 1302, 1383, 1530, 1611, 1857
BstXI CCANNNNNNTGG 3 cut(s) 331, 1339, 1567
BstYI RGATCY 9 cut(s) 279, 927, 1074, 1155, 1302, 1383, 1530, 1611, 1857
BstZI CGGCCG 1 cut(s) 1225
Bsu15I ATCGAT 1 cut(s) 442
BsuI GTATCC 3 cut(s) 1184, 1412, 1640
BsuRI GGCC 9 cut(s) 34, 144, 550, 923, 1151, 1227, 1455, 1683, 1835
BsuTUI ATCGAT 1 cut(s) 442
BtgI CCRYGG 4 cut(s) 1060, 1288, 1516, 1972
BtrI CACGTC 1 cut(s) 306
BtsIMutI CAGTG 4 cut(s) 66, 417, 612, 864
Cac8I GCNNGC 7 cut(s) 979, 983, 1207, 1211, 1754, 1891, 1895
CaiI CAGNNNCTG 1 cut(s) 967
CfoI GCGC 1 cut(s) 825
Cfr10I RCCGGY 2 cut(s) 385, 1205
Cfr13I GGNCC 2 cut(s) 334, 548
Cfr9I CCCGGG 1 cut(s) 545
ClaI ATCGAT 1 cut(s) 442
CseI GACGC 1 cut(s) 953
Csp6I GTAC 1 cut(s) 1914
CviAII CATG 3 cut(s) 236, 317, 1753
CviQI GTAC 1 cut(s) 1914
DdeI CTNAG 6 cut(s) 395, 641, 1354, 1380, 1608, 1810
DraIII CACNNNGTG 2 cut(s) 1048, 1276
DrdI GACNNNNNNGTC 1 cut(s) 304
DriI GACNNNNNGTC 1 cut(s) 739
DseDI GACNNNNNNGTC 1 cut(s) 304
EaeI YGGCCR 4 cut(s) 142, 1225, 1453, 1681
EagI CGGCCG 1 cut(s) 1225
Eam1105I GACNNNNNGTC 1 cut(s) 739
Ecl136II GAGCTC 4 cut(s) 1125, 1353, 1581, 1809
EclXI CGGCCG 1 cut(s) 1225
Eco130I CCWWGG 3 cut(s) 103, 1338, 1566
Eco24I GRGCYC 4 cut(s) 1127, 1355, 1583, 1811
Eco31I GGTCTC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 334
Eco47III AGCGCT 1 cut(s) 824
Eco52I CGGCCG 1 cut(s) 1225
Eco53kI GAGCTC 4 cut(s) 1125, 1353, 1581, 1809
Eco57I CTGAAG 1 cut(s) 501
Eco88I CYCGRG 3 cut(s) 545, 1796, 1901
EcoICRI GAGCTC 4 cut(s) 1125, 1353, 1581, 1809
EcoRI GAATTC 2 cut(s) 809, 945
EcoRII CCWGG 3 cut(s) 930, 1158, 1917
EcoT14I CCWWGG 3 cut(s) 103, 1338, 1566
EcoT22I ATGCAT 1 cut(s) 318
EcoT38I GRGCYC 4 cut(s) 1127, 1355, 1583, 1811
ErhI CCWWGG 3 cut(s) 103, 1338, 1566
Esp3I CGTCTC 4 cut(s) 1061, 1289, 1517, 1973
FaeI CATG 3 cut(s) 239, 320, 1756
FaqI GGGAC 4 cut(s) 305, 487, 526, 604
FatI CATG 3 cut(s) 235, 316, 1752
FauI CCCGC 2 cut(s) 276, 581
FblI GTMKAC 1 cut(s) 1946
FriOI GRGCYC 4 cut(s) 1127, 1355, 1583, 1811
FspBI CTAG 4 cut(s) 74, 131, 254, 1007
GlaI GCGC 1 cut(s) 824
GsaI CCCAGC 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 826
HaeIII GGCC 9 cut(s) 34, 144, 550, 923, 1151, 1227, 1455, 1683, 1835
HapII CCGG 7 cut(s) 386, 546, 1095, 1206, 1434, 1551, 1662
HgaI GACGC 1 cut(s) 953
HhaI GCGC 1 cut(s) 825
Hin1II CATG 3 cut(s) 239, 320, 1756
Hin6I GCGC 1 cut(s) 823
HinP1I GCGC 1 cut(s) 823
HincII GTYRAC 3 cut(s) 616, 1035, 1263
HindII GTYRAC 3 cut(s) 616, 1035, 1263
HpaI GTTAAC 1 cut(s) 616
HpaII CCGG 7 cut(s) 386, 546, 1095, 1206, 1434, 1551, 1662
HphI GGTGA 7 cut(s) 34, 499, 871, 1327, 1555, 1783, 1946
Hpy166II GTNNAC 4 cut(s) 616, 1035, 1263, 1947
Hpy8I GTNNAC 4 cut(s) 616, 1035, 1263, 1947
Hpy99I CGWCG 3 cut(s) 161, 170, 737
HpyCH4III ACNGT 4 cut(s) 70, 179, 349, 501
HpyCH4IV ACGT 6 cut(s) 168, 305, 915, 1143, 1371, 1599
HpyF10VI GCNNNNNNNGC 3 cut(s) 518, 527, 574
HpyF3I CTNAG 6 cut(s) 395, 641, 1354, 1380, 1608, 1810
HpySE526I ACGT 6 cut(s) 168, 305, 915, 1143, 1371, 1599
Hsp92II CATG 3 cut(s) 239, 320, 1756
HspAI GCGC 1 cut(s) 823
KroI GCCGGC 1 cut(s) 1205
KroNI GCCGGC 1 cut(s) 1207
KspAI GTTAAC 1 cut(s) 616
LmnI GCTCC 4 cut(s) 382, 637, 649, 1740
LweI GCATC 2 cut(s) 629, 831
MaeI CTAG 4 cut(s) 74, 131, 254, 1007
MaeII ACGT 6 cut(s) 168, 305, 915, 1143, 1371, 1599
MaeIII GTNAC 5 cut(s) 7, 56, 349, 422, 660
MflI RGATCY 9 cut(s) 279, 927, 1074, 1155, 1302, 1383, 1530, 1611, 1857
MhlI GDGCHC 5 cut(s) 1127, 1355, 1583, 1737, 1811
MluCI AATT 5 cut(s) 51, 217, 809, 846, 945
MlyI GAGTC 6 cut(s) 254, 902, 1040, 1081, 1268, 1952
MmeI TCCRAC 1 cut(s) 492
Mph1103I ATGCAT 1 cut(s) 318
MroNI GCCGGC 1 cut(s) 1205
MroXI GAANNNNTTC 2 cut(s) 90, 945
MseI TTAA 3 cut(s) 216, 615, 918
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 2 cut(s) 512, 521
MspI CCGG 7 cut(s) 386, 546, 1095, 1206, 1434, 1551, 1662
MspR9I CCNGG 5 cut(s) 546, 547, 932, 1160, 1919
MvaI CCWGG 3 cut(s) 932, 1160, 1919
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 518, 527, 574
NaeI GCCGGC 1 cut(s) 1207
NciI CCSGG 2 cut(s) 546, 547
NgoMIV GCCGGC 1 cut(s) 1205
NlaIII CATG 3 cut(s) 239, 320, 1756
NlaIV GGNNCC 4 cut(s) 336, 384, 390, 1859
NmeAIII GCCGAG 1 cut(s) 733
NmuCI GTSAC 2 cut(s) 7, 349
NsiI ATGCAT 1 cut(s) 318
NspI RCATGY 3 cut(s) 239, 320, 1756
PaeI GCATGC 1 cut(s) 1756
PaeR7I CTCGAG 2 cut(s) 1796, 1901
PcsI WCGNNNNNNNCGW 4 cut(s) 162, 165, 432, 448
PdiI GCCGGC 1 cut(s) 1207
PdmI GAANNNNTTC 2 cut(s) 90, 945
PfeI GAWTC 8 cut(s) 202, 224, 370, 601, 1487, 1715, 1840, 1980
PflFI GACNNNGTC 1 cut(s) 68
PfoI TCCNGGA 2 cut(s) 930, 1158
PleI GAGTC 6 cut(s) 254, 901, 1039, 1081, 1267, 1951
PpsI GAGTC 6 cut(s) 254, 901, 1039, 1081, 1267, 1951
PshBI ATTAAT 1 cut(s) 216
Psp124BI GAGCTC 4 cut(s) 1127, 1355, 1583, 1811
Psp1406I AACGTT 1 cut(s) 915
Psp6I CCWGG 3 cut(s) 930, 1158, 1917
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 3 cut(s) 930, 1158, 1917
PspN4I GGNNCC 4 cut(s) 336, 384, 390, 1859
PspPI GGNCC 2 cut(s) 334, 548
PspXI VCTCGAGB 2 cut(s) 1796, 1901
PstNI CAGNNNCTG 1 cut(s) 967
PsuI RGATCY 9 cut(s) 279, 927, 1074, 1155, 1302, 1383, 1530, 1611, 1857
PsyI GACNNNGTC 1 cut(s) 68
PvuII CAGCTG 2 cut(s) 512, 521
RsaI GTAC 1 cut(s) 1915
RsaNI GTAC 1 cut(s) 1914
RseI CAYNNNNRTG 1 cut(s) 329
SacI GAGCTC 4 cut(s) 1127, 1355, 1583, 1811
SaqAI TTAA 3 cut(s) 216, 615, 918
Sau96I GGNCC 2 cut(s) 334, 548
SchI GAGTC 6 cut(s) 254, 902, 1040, 1081, 1268, 1952
ScrFI CCNGG 5 cut(s) 546, 547, 932, 1160, 1919
SduI GDGCHC 5 cut(s) 1127, 1355, 1583, 1737, 1811
SfaNI GCATC 2 cut(s) 629, 831
Sfr274I CTCGAG 2 cut(s) 1796, 1901
SinI GGWCC 1 cut(s) 334
SlaI CTCGAG 2 cut(s) 1796, 1901
SmaI CCCGGG 1 cut(s) 547
SmiMI CAYNNNNRTG 1 cut(s) 329
SphI GCATGC 1 cut(s) 1756
Sse9I AATT 5 cut(s) 51, 217, 809, 846, 945
SsiI CCGC 6 cut(s) 269, 536, 588, 1228, 1456, 1684
SspMI CTAG 4 cut(s) 74, 131, 254, 1007
SstI GAGCTC 4 cut(s) 1127, 1355, 1583, 1811
StyD4I CCNGG 5 cut(s) 544, 545, 930, 1158, 1917
StyI CCWWGG 3 cut(s) 103, 1338, 1566
TaaI ACNGT 4 cut(s) 70, 179, 349, 501
TaiI ACGT 6 cut(s) 171, 308, 918, 1146, 1374, 1602
TaqI TCGA 8 cut(s) 63, 189, 442, 483, 807, 1000, 1797, 1902
TasI AATT 5 cut(s) 51, 217, 809, 846, 945
TauI GCSGC 3 cut(s) 1230, 1458, 1686
TfiI GAWTC 8 cut(s) 202, 224, 370, 601, 1487, 1715, 1840, 1980
Tru1I TTAA 3 cut(s) 216, 615, 918
Tru9I TTAA 3 cut(s) 216, 615, 918
TscAI CASTG 4 cut(s) 73, 424, 612, 871
TseFI GTSAC 2 cut(s) 7, 349
Tsp45I GTSAC 2 cut(s) 7, 349
TspDTI ATGAA 5 cut(s) 671, 697, 805, 1487, 1715
TspGWI ACGGA 6 cut(s) 1049, 1277, 1505, 1727, 1955, 1961
TspMI CCCGGG 1 cut(s) 545
TspRI CASTG 4 cut(s) 73, 424, 612, 871
Tth111I GACNNNGTC 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 334
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 3 cut(s) 809, 846, 945
XceI RCATGY 3 cut(s) 239, 320, 1756
XcmI CCANNNNNNNNNTGG 2 cut(s) 1498, 1726
XhoI CTCGAG 2 cut(s) 1796, 1901
XmaI CCCGGG 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 1946
XmnI GAANNNNTTC 2 cut(s) 90, 945
XspI CTAG 4 cut(s) 74, 131, 254, 1007
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.