Rh5CG290800

Ubiquitin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0019549
Physical Location & Seq
Forward (+)
31986880 .. 31989534
2655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG290800.1

Sequence Viewer

Length: 1329 bp
ATGCCAGAGAAAACCGATAAGTCAAAACACGTGGCTCGCTTCCATTGGATAGCTCCATTAGGTGAGTCGGCAAATGGTGCTATATATGAAGGCTGCTTCTTCCCCAAACCCTTCATCATTCAGATTTCAGAGGCAAAACAAAACCATTCTGTTGAAGCTCTTCAAATTTCTCTCGCTCTCAAGATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATTACCCTCGAGGTTGAAAGCTCCGACACTATCGACAACGTTAAAGCGAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGGACGCTTGCTGACTATAACATTCAGAAGGAGTCCACTCTCCACTTGGTGCTCAGACTCCGTGGTGGCATGCAGATCTTTGTCAAGACTCTCACAGGGAAGACCATCACCTTGGAGGTCGAGAGCTCTGATACAATCGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATCCCCCCAGATCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTAGAGGATGGTCGCACCCTTGCAGATTACAATATCCAAAAGGAGTCCACCCTTCACCTGGTGCTTCGTCTCCGTGGTGGGATGCAAATCTTCGTGAAGACCCTTACTGGGAAGACAATCACGTTGGAGGTGGAAAGCTCTGATACAATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCTGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTATAACATTCAAAAGGAGTCGACCTTGCACTTGGTTCTCCGGCTGCGTGGTGGAATGCAAATTTTTGTGAAGACTTTGACAGGGAAAACAATTACTTTGGAAGTGGAAAGCTCGGACACAATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAAGATGGTAGGACACTGGCAGACTACAACATCCAGAAGGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGGGATGCAGATTTTTGTGAAGACCCTCACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCCGGTAAGCAGCTTGAAGATGGGAGGACTCTAGCGGATTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTCCTGCGCCTCCGTGGTGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

442

Amino Acids

49.5

Weight (kDa)

7.74

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 62 - 132 1.1e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 64 - 135 1.4e-31 Ubiquitin family
Rad60-SLD PF11976 138 - 208 1.1e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 140 - 211 1.4e-31 Ubiquitin family
Rad60-SLD PF11976 214 - 284 1.1e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 216 - 287 1.4e-31 Ubiquitin family
Rad60-SLD PF11976 290 - 360 1.1e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 292 - 363 1.4e-31 Ubiquitin family
Rad60-SLD PF11976 366 - 436 1.1e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 368 - 439 1.4e-31 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65350
fragaria_vesca FvH4_6g15622
prunus_persica Prupe.6G238900_v2.0.a1
pyrus_communis pycom05g31060
rosa_chinensis RchiOBHm_Chr3g0469291
rosa_samantha Rh5BG034500 Rh5CG290800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 767
AccI GTMKAC 4 cut(s) 833, 1061, 1084, 1289
AccIII TCCGGA 1 cut(s) 1207
AciI CCGC 1 cut(s) 1265
AclI AACGTT 1 cut(s) 258
AclWI GGATC 3 cut(s) 265, 493, 721
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 3 cut(s) 165, 288, 873
AcvI CACGTG 1 cut(s) 31
AdeI CACNNNGTG 2 cut(s) 391, 619
AfiI CCNNNNNNNGG 5 cut(s) 280, 508, 616, 666, 736
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 6 cut(s) 155, 164, 236, 824, 1019, 1247
AjnI CCWGG 3 cut(s) 501, 615, 729
Alw21I GWGCWC 3 cut(s) 396, 470, 1080
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 3 cut(s) 265, 493, 721
AlwNI CAGNNNCTG 1 cut(s) 310
Ama87I CYCGRG 1 cut(s) 227
Aor13HI TCCGGA 1 cut(s) 1207
AoxI GGCC 1 cut(s) 340
ApeKI GCWGC 5 cut(s) 93, 328, 856, 1012, 1240
ApoI RAATTY 3 cut(s) 165, 288, 873
ArsI GACNNNNNNTTYG 2 cut(s) 1054, 1086
Asp700I GAANNNNTTC 2 cut(s) 159, 972
AspLEI GCGC 1 cut(s) 1311
AspS9I GGNCC 1 cut(s) 1210
AsuHPI GGTGA 4 cut(s) 74, 442, 605, 1289
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 1 cut(s) 1210
BanII GRGCYC 1 cut(s) 470
BbrPI CACGTG 1 cut(s) 31
BbsI GAAGAC 5 cut(s) 449, 662, 677, 890, 1118
Bbv12I GWGCWC 3 cut(s) 396, 470, 1080
BbvI GCAGC 5 cut(s) 80, 340, 843, 1024, 1252
BccI CCATC 4 cut(s) 455, 560, 1016, 1244
BceAI ACGGC 1 cut(s) 355
BciT130I CCWGG 3 cut(s) 503, 617, 731
BciVI GTATCC 1 cut(s) 527
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 2 cut(s) 560, 1262
BfuAI ACCTGC 1 cut(s) 767
BfuI GTATCC 1 cut(s) 527
BglII AGATCT 2 cut(s) 189, 417
BisI GCNGC 5 cut(s) 94, 329, 857, 1013, 1241
BlsI GCNGC 5 cut(s) 95, 330, 858, 1014, 1242
Bme1390I CCNGG 3 cut(s) 503, 617, 731
Bme18I GGWCC 1 cut(s) 1210
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 1210
BmrFI CCNGG 3 cut(s) 503, 617, 731
BmrI ACTGGG 1 cut(s) 675
BmsI GCATC 3 cut(s) 174, 630, 1086
BmuI ACTGGG 1 cut(s) 675
BpiI GAAGAC 5 cut(s) 449, 662, 677, 890, 1118
BpuEI CTTGAG 2 cut(s) 164, 353
Bsa29I ATCGAT 1 cut(s) 480
BsaAI YACGTR 2 cut(s) 31, 1088
BsaBI GATNNNNATC 2 cut(s) 188, 644
BsaJI CCNNGG 5 cut(s) 403, 453, 631, 1137, 1315
BsaWI WCCGGW 1 cut(s) 1207
Bsc4I CCNNNNNNNGG 5 cut(s) 280, 508, 616, 666, 736
Bse118I RCCGGY 1 cut(s) 1232
Bse1I ACTGG 3 cut(s) 670, 1038, 1126
Bse8I GATNNNNATC 2 cut(s) 188, 644
BseAI TCCGGA 1 cut(s) 1207
BseBI CCWGG 3 cut(s) 503, 617, 731
BseCI ATCGAT 1 cut(s) 480
BseDI CCNNGG 5 cut(s) 403, 453, 631, 1137, 1315
BseGI GGATG 5 cut(s) 571, 645, 1047, 1101, 1275
BseJI GATNNNNATC 2 cut(s) 188, 644
BseLI CCNNNNNNNGG 5 cut(s) 280, 508, 616, 666, 736
BseMII CTCAG 1 cut(s) 409
BseNI ACTGG 3 cut(s) 670, 1038, 1126
BseX3I CGGCCG 1 cut(s) 340
BseXI GCAGC 5 cut(s) 80, 340, 843, 1024, 1252
Bsh1285I CGRYCG 1 cut(s) 343
BshFI GGCC 1 cut(s) 342
BshVI ATCGAT 1 cut(s) 480
BsiEI CGRYCG 1 cut(s) 343
BsiHKAI GWGCWC 3 cut(s) 396, 470, 1080
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 4 cut(s) 343, 853, 1208, 1233
BslI CCNNNNNNNGG 5 cut(s) 280, 508, 616, 666, 736
BsmAI GTCTC 1 cut(s) 632
BsmBI CGTCTC 1 cut(s) 632
BsmI GAATGC 3 cut(s) 873, 972, 1200
BsnI GGCC 1 cut(s) 342
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 3 cut(s) 396, 470, 1080
Bsp13I TCCGGA 1 cut(s) 1207
Bsp143I GATC 8 cut(s) 189, 270, 312, 417, 498, 526, 726, 754
BspACI CCGC 1 cut(s) 1265
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 408
BspDI ATCGAT 1 cut(s) 480
BspEI TCCGGA 1 cut(s) 1207
BspMI ACCTGC 1 cut(s) 767
BspPI GGATC 3 cut(s) 265, 493, 721
BspQI GCTCTTC 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 1232
BsrI ACTGG 3 cut(s) 670, 1038, 1126
BssAI RCCGGY 1 cut(s) 1232
BssECI CCNNGG 5 cut(s) 403, 453, 631, 1137, 1315
BssMI GATC 8 cut(s) 189, 270, 312, 417, 498, 526, 726, 754
BssT1I CCWWGG 2 cut(s) 453, 1137
Bst2UI CCWGG 3 cut(s) 503, 617, 731
Bst4CI ACNGT 1 cut(s) 786
Bst6I CTCTTC 1 cut(s) 165
BstAPI GCANNNNNTGC 2 cut(s) 77, 1075
BstBAI YACGTR 2 cut(s) 31, 1088
BstC8I GCNNGC 6 cut(s) 37, 322, 326, 351, 413, 550
BstDEI CTNAG 1 cut(s) 395
BstDSI CCRYGG 3 cut(s) 403, 631, 1315
BstF5I GGATG 5 cut(s) 571, 645, 1047, 1101, 1275
BstHHI GCGC 1 cut(s) 1311
BstKTI GATC 8 cut(s) 192, 273, 315, 420, 501, 529, 729, 757
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 8 cut(s) 189, 270, 312, 417, 498, 526, 726, 754
BstMCI CGRYCG 1 cut(s) 343
BstMWI GCNNNNNNNGC 2 cut(s) 77, 1075
BstNI CCWGG 3 cut(s) 503, 617, 731
BstNSI RCATGY 1 cut(s) 415
BstSCI CCNGG 3 cut(s) 501, 615, 729
BstV1I GCAGC 5 cut(s) 80, 340, 843, 1024, 1252
BstV2I GAAGAC 5 cut(s) 449, 662, 677, 890, 1118
BstX2I RGATCY 5 cut(s) 189, 270, 417, 498, 726
BstXI CCANNNNNNTGG 2 cut(s) 454, 1138
BstYI RGATCY 5 cut(s) 189, 270, 417, 498, 726
BstZI CGGCCG 1 cut(s) 340
Bsu15I ATCGAT 1 cut(s) 480
BsuI GTATCC 1 cut(s) 527
BsuRI GGCC 1 cut(s) 342
BsuTUI ATCGAT 1 cut(s) 480
BtgI CCRYGG 3 cut(s) 403, 631, 1315
BtsCI GGATG 5 cut(s) 571, 645, 1047, 1101, 1275
BtsIMutI CAGTG 2 cut(s) 1031, 1119
BveI ACCTGC 1 cut(s) 767
Cac8I GCNNGC 6 cut(s) 37, 322, 326, 351, 413, 550
CaiI CAGNNNCTG 1 cut(s) 310
CfoI GCGC 1 cut(s) 1311
Cfr10I RCCGGY 1 cut(s) 1232
Cfr13I GGNCC 1 cut(s) 1210
ClaI ATCGAT 1 cut(s) 480
CseI GACGC 1 cut(s) 355
CsiI ACCWGGT 1 cut(s) 615
CspCI CAANNNNNGTGG 2 cut(s) 12, 47
CviAII CATG 1 cut(s) 412
DdeI CTNAG 1 cut(s) 395
DpnI GATC 8 cut(s) 191, 272, 314, 419, 500, 528, 728, 756
DpnII GATC 8 cut(s) 189, 270, 312, 417, 498, 526, 726, 754
DraIII CACNNNGTG 2 cut(s) 391, 619
EaeI YGGCCR 1 cut(s) 340
EagI CGGCCG 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 468
EclXI CGGCCG 1 cut(s) 340
Eco130I CCWWGG 2 cut(s) 453, 1137
Eco24I GRGCYC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 1210
Eco52I CGGCCG 1 cut(s) 340
Eco53kI GAGCTC 1 cut(s) 468
Eco72I CACGTG 1 cut(s) 31
Eco88I CYCGRG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 468
EcoRI GAATTC 1 cut(s) 288
EcoRII CCWGG 3 cut(s) 501, 615, 729
EcoT14I CCWWGG 2 cut(s) 453, 1137
EcoT38I GRGCYC 1 cut(s) 470
ErhI CCWWGG 2 cut(s) 453, 1137
Esp3I CGTCTC 1 cut(s) 632
FaeI CATG 1 cut(s) 415
FaiI YATR 8 cut(s) 83, 85, 87, 360, 413, 816, 1133, 1226
FatI CATG 1 cut(s) 411
FbaI TGATCA 1 cut(s) 754
FblI GTMKAC 4 cut(s) 833, 1061, 1084, 1289
Fnu4HI GCNGC 5 cut(s) 94, 329, 857, 1013, 1241
FokI GGATG 5 cut(s) 578, 652, 1034, 1108, 1262
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 5 cut(s) 94, 329, 857, 1013, 1241
FspBI CTAG 2 cut(s) 560, 1262
GlaI GCGC 1 cut(s) 1310
GluI GCNGC 5 cut(s) 94, 329, 857, 1013, 1241
HaeIII GGCC 1 cut(s) 342
HapII CCGG 4 cut(s) 343, 853, 1208, 1233
HgaI GACGC 1 cut(s) 355
HhaI GCGC 1 cut(s) 1311
Hin1II CATG 1 cut(s) 415
Hin6I GCGC 1 cut(s) 1309
HinP1I GCGC 1 cut(s) 1309
HincII GTYRAC 3 cut(s) 834, 1062, 1290
HindII GTYRAC 3 cut(s) 834, 1062, 1290
HpaII CCGG 4 cut(s) 343, 853, 1208, 1233
HphI GGTGA 4 cut(s) 74, 442, 605, 1289
Hpy166II GTNNAC 7 cut(s) 378, 606, 782, 834, 1062, 1085, 1290
Hpy8I GTNNAC 7 cut(s) 378, 606, 782, 834, 1062, 1085, 1290
HpyAV CCTTC 8 cut(s) 83, 121, 364, 620, 962, 1048, 1276, 1304
HpyCH4III ACNGT 1 cut(s) 786
HpyCH4IV ACGT 4 cut(s) 30, 258, 680, 1087
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 1075
HpyF3I CTNAG 1 cut(s) 395
HpySE526I ACGT 4 cut(s) 30, 258, 680, 1087
Hsp92II CATG 1 cut(s) 415
HspAI GCGC 1 cut(s) 1309
Kpn2I TCCGGA 1 cut(s) 1207
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 8 cut(s) 189, 270, 312, 417, 498, 526, 726, 754
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 3 cut(s) 58, 245, 1083
Lsp1109I GCAGC 5 cut(s) 80, 340, 843, 1024, 1252
LweI GCATC 3 cut(s) 174, 630, 1086
MabI ACCWGGT 1 cut(s) 615
MaeI CTAG 2 cut(s) 560, 1262
MaeII ACGT 4 cut(s) 30, 258, 680, 1087
MalI GATC 8 cut(s) 191, 272, 314, 419, 500, 528, 728, 756
MboI GATC 8 cut(s) 189, 270, 312, 417, 498, 526, 726, 754
MfeI CAATTG 3 cut(s) 705, 933, 1161
MflI RGATCY 5 cut(s) 189, 270, 417, 498, 726
MhlI GDGCHC 3 cut(s) 396, 470, 1080
MluCI AATT 7 cut(s) 165, 288, 705, 873, 903, 933, 1161
MmeI TCCRAC 3 cut(s) 267, 663, 768
MroI TCCGGA 1 cut(s) 1207
MroXI GAANNNNTTC 2 cut(s) 159, 972
MseI TTAA 1 cut(s) 261
MspI CCGG 4 cut(s) 343, 853, 1208, 1233
MspR9I CCNGG 3 cut(s) 503, 617, 731
MunI CAATTG 3 cut(s) 705, 933, 1161
Mva1269I GAATGC 3 cut(s) 873, 972, 1200
MvaI CCWGG 3 cut(s) 503, 617, 731
MwoI GCNNNNNNNGC 2 cut(s) 77, 1075
NdeII GATC 8 cut(s) 189, 270, 312, 417, 498, 526, 726, 754
NlaIII CATG 1 cut(s) 415
NspI RCATGY 1 cut(s) 415
PaeI GCATGC 1 cut(s) 415
PaeR7I CTCGAG 1 cut(s) 227
PciSI GCTCTTC 1 cut(s) 165
PctI GAATGC 3 cut(s) 873, 972, 1200
PdmI GAANNNNTTC 2 cut(s) 159, 972
PfeI GAWTC 2 cut(s) 955, 1183
PflFI GACNNNGTC 1 cut(s) 713
PfoI TCCNGGA 2 cut(s) 501, 729
PkrI GCNGC 5 cut(s) 95, 330, 858, 1014, 1242
PmaCI CACGTG 1 cut(s) 31
PmlI CACGTG 1 cut(s) 31
Ppu21I YACGTR 2 cut(s) 31, 1088
Psp124BI GAGCTC 1 cut(s) 470
Psp1406I AACGTT 1 cut(s) 258
Psp6I CCWGG 3 cut(s) 501, 615, 729
PspCI CACGTG 1 cut(s) 31
PspGI CCWGG 3 cut(s) 501, 615, 729
PspPI GGNCC 1 cut(s) 1210
PspXI VCTCGAGB 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 310
PsuI RGATCY 5 cut(s) 189, 270, 417, 498, 726
PsyI GACNNNGTC 1 cut(s) 713
SacI GAGCTC 1 cut(s) 470
SalI GTCGAC 3 cut(s) 832, 1060, 1288
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 5 cut(s) 94, 329, 857, 1013, 1241
Sau3AI GATC 8 cut(s) 189, 270, 312, 417, 498, 526, 726, 754
Sau96I GGNCC 1 cut(s) 1210
ScrFI CCNGG 3 cut(s) 503, 617, 731
SduI GDGCHC 3 cut(s) 396, 470, 1080
SexAI ACCWGGT 1 cut(s) 615
SfaNI GCATC 3 cut(s) 174, 630, 1086
Sfr274I CTCGAG 1 cut(s) 227
SinI GGWCC 1 cut(s) 1210
SlaI CTCGAG 1 cut(s) 227
SmlI CTYRAG 3 cut(s) 179, 227, 332
SmoI CTYRAG 3 cut(s) 179, 227, 332
SphI GCATGC 1 cut(s) 415
Sse9I AATT 7 cut(s) 165, 288, 705, 873, 903, 933, 1161
SsiI CCGC 1 cut(s) 1265
SspMI CTAG 2 cut(s) 560, 1262
SstI GAGCTC 1 cut(s) 470
StyD4I CCNGG 3 cut(s) 501, 615, 729
StyI CCWWGG 2 cut(s) 453, 1137
TaaI ACNGT 1 cut(s) 786
TaiI ACGT 4 cut(s) 33, 261, 683, 1090
TaqI TCGA 7 cut(s) 228, 252, 462, 480, 833, 1061, 1289
TasI AATT 7 cut(s) 165, 288, 705, 873, 903, 933, 1161
TfiI GAWTC 2 cut(s) 955, 1183
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 2 cut(s) 1038, 1126
TseI GCWGC 5 cut(s) 93, 328, 856, 1012, 1240
TspDTI ATGAA 2 cut(s) 102, 103
TspGWI ACGGA 5 cut(s) 392, 620, 810, 1070, 1304
TspRI CASTG 2 cut(s) 1038, 1126
Tth111I GACNNNGTC 1 cut(s) 713
VpaK11BI GGWCC 1 cut(s) 1210
XapI RAATTY 3 cut(s) 165, 288, 873
XceI RCATGY 1 cut(s) 415
XcmI CCANNNNNNNNNTGG 2 cut(s) 385, 613
XhoI CTCGAG 1 cut(s) 227
XmiI GTMKAC 4 cut(s) 833, 1061, 1084, 1289
XmnI GAANNNNTTC 2 cut(s) 159, 972
XspI CTAG 2 cut(s) 560, 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.