No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g28450 FvH4_3g28450 |
| malus_domestica | MD03G1172000.v1.1 |
| prunus_persica | Prupe.4G254900_v2.0.a1 Prupe.4G254900_v2.0.a1 |
| pyrus_communis | pycom03g12910 |
| rosa_chinensis | RchiOBHm_Chr5g0053011 |
| rosa_laevigata | RLG00000034778 |
| rosa_multiflora | Rmu_sc0006573.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00028830 |
| rosa_rugosa | Rorug05G0268800 |
| rosa_samantha | Rh5AG341100 Rh5BG351600 Rh5CG378000 Rh5DG368000 |
| rosa_wichuraiana | Rw5G032150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1733, 1880 |
| AarI | CACCTGC | 1 cut(s) | 854 |
| AbsI | CCTCGAGG | 1 cut(s) | 1927 |
| Acc36I | ACCTGC | 1 cut(s) | 854 |
| AccB1I | GGYRCC | 2 cut(s) | 90, 2671 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 180, 497 |
| AccI | GTMKAC | 2 cut(s) | 124, 2173 |
| AciI | CCGC | 1 cut(s) | 2511 |
| AclWI | GGATC | 6 cut(s) | 422, 661, 1101, 1186, 1919, 2490 |
| AcoI | YGGCCR | 1 cut(s) | 1633 |
| AcsI | RAATTY | 6 cut(s) | 561, 1148, 1305, 1320, 1687, 1870 |
| AcuI | CTGAAG | 4 cut(s) | 573, 1488, 2027, 2562 |
| AfaI | GTAC | 5 cut(s) | 235, 970, 1302, 1487, 1630 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 180, 298, 497, 626, 962, 1963, 2524, 2525 |
| AflIII | ACRYGT | 1 cut(s) | 2461 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 889 |
| AhlI | ACTAGT | 1 cut(s) | 2323 |
| AjnI | CCWGG | 6 cut(s) | 790, 1615, 2124, 2251, 2410, 2523 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 285, 317 |
| Alw21I | GWGCWC | 3 cut(s) | 505, 593, 1803 |
| Alw26I | GTCTC | 4 cut(s) | 984, 1036, 1457, 2229 |
| AlwI | GGATC | 6 cut(s) | 422, 661, 1101, 1186, 1919, 2490 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1466, 2131, 2655 |
| Ama87I | CYCGRG | 1 cut(s) | 1927 |
| AoxI | GGCC | 3 cut(s) | 1619, 1633, 1954 |
| ApeKI | GCWGC | 5 cut(s) | 806, 821, 1123, 1600, 2606 |
| ApoI | RAATTY | 6 cut(s) | 561, 1148, 1305, 1320, 1687, 1870 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1573, 1605 |
| AspS9I | GGNCC | 7 cut(s) | 37, 254, 1391, 1505, 1619, 1955, 2414 |
| AsuC2I | CCSGG | 2 cut(s) | 964, 1977 |
| AsuHPI | GGTGA | 4 cut(s) | 878, 1261, 1391, 2400 |
| AsuNHI | GCTAGC | 1 cut(s) | 1903 |
| AvaI | CYCGRG | 1 cut(s) | 1927 |
| AvaII | GGWCC | 5 cut(s) | 37, 254, 1391, 1505, 2414 |
| AxyI | CCTNAGG | 2 cut(s) | 1387, 2060 |
| BaeGI | GKGCMC | 1 cut(s) | 2762 |
| BanI | GGYRCC | 2 cut(s) | 90, 2671 |
| BanII | GRGCYC | 2 cut(s) | 505, 593 |
| BauI | CACGAG | 1 cut(s) | 1796 |
| BbsI | GAAGAC | 1 cut(s) | 511 |
| Bbv12I | GWGCWC | 3 cut(s) | 505, 593, 1803 |
| BbvCI | CCTCAGC | 1 cut(s) | 1790 |
| BbvI | GCAGC | 5 cut(s) | 808, 818, 1110, 1612, 2618 |
| BciT130I | CCWGG | 6 cut(s) | 792, 1617, 2126, 2253, 2412, 2525 |
| BcnI | CCSGG | 2 cut(s) | 964, 1977 |
| BcoDI | GTCTC | 4 cut(s) | 984, 1036, 1457, 2229 |
| BcuI | ACTAGT | 1 cut(s) | 2323 |
| BfaI | CTAG | 6 cut(s) | 825, 1451, 1904, 2324, 2423, 2610 |
| BfmI | CTRYAG | 6 cut(s) | 237, 282, 461, 699, 861, 2115 |
| BfuAI | ACCTGC | 1 cut(s) | 854 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2031 |
| BglII | AGATCT | 3 cut(s) | 1718, 1982, 2599 |
| BisI | GCNGC | 5 cut(s) | 807, 822, 1124, 1601, 2607 |
| BlsI | GCNGC | 5 cut(s) | 808, 823, 1125, 1602, 2608 |
| BmcAI | AGTACT | 2 cut(s) | 1487, 1630 |
| Bme1390I | CCNGG | 8 cut(s) | 792, 964, 1617, 1977, 2126, 2253, 2412, 2525 |
| Bme18I | GGWCC | 5 cut(s) | 37, 254, 1391, 1505, 2414 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 889 |
| BmeT110I | CYCGRG | 1 cut(s) | 1927 |
| BmgT120I | GGNCC | 7 cut(s) | 37, 254, 1391, 1505, 1619, 1955, 2414 |
| BmiI | GGNNCC | 6 cut(s) | 38, 92, 303, 1506, 1507, 2673 |
| BmrFI | CCNGG | 8 cut(s) | 792, 964, 1617, 1977, 2126, 2253, 2412, 2525 |
| BmrI | ACTGGG | 2 cut(s) | 114, 2371 |
| BmtI | GCTAGC | 1 cut(s) | 1907 |
| BmuI | ACTGGG | 2 cut(s) | 114, 2371 |
| BpiI | GAAGAC | 1 cut(s) | 511 |
| BpmI | CTGGAG | 2 cut(s) | 519, 813 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1372, 1790, 2645, 2697 |
| BpuEI | CTTGAG | 3 cut(s) | 776, 921, 1206 |
| BpuMI | CCSGG | 2 cut(s) | 964, 1977 |
| BsaI | GGTCTC | 1 cut(s) | 984 |
| BsaJI | CCNNGG | 6 cut(s) | 790, 1616, 1961, 2523, 2524, 2829 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 786, 816, 2155, 2185 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 180, 298, 497, 626, 962, 1963, 2524, 2525 |
| Bse21I | CCTNAGG | 2 cut(s) | 1387, 2060 |
| Bse3DI | GCAATG | 4 cut(s) | 1977, 2268, 2273, 2352 |
| BseBI | CCWGG | 6 cut(s) | 792, 1617, 2126, 2253, 2412, 2525 |
| BseDI | CCNNGG | 6 cut(s) | 790, 1616, 1961, 2523, 2524, 2829 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 180, 298, 497, 626, 962, 1963, 2524, 2525 |
| BseMI | GCAATG | 4 cut(s) | 1977, 2268, 2273, 2352 |
| BseMII | CTCAG | 9 cut(s) | 288, 359, 595, 755, 1401, 1781, 2051, 2240, 2711 |
| BseSI | GKGCMC | 1 cut(s) | 2762 |
| BseXI | GCAGC | 5 cut(s) | 808, 818, 1110, 1612, 2618 |
| BseYI | CCCAGC | 1 cut(s) | 180 |
| BsgI | GTGCAG | 5 cut(s) | 703, 1474, 1842, 1903, 2572 |
| BshFI | GGCC | 3 cut(s) | 1621, 1635, 1956 |
| BshNI | GGYRCC | 2 cut(s) | 90, 2671 |
| BsiHKAI | GWGCWC | 3 cut(s) | 505, 593, 1803 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1927 |
| BsiSI | CCGG | 2 cut(s) | 963, 1976 |
| BslFI | GGGAC | 2 cut(s) | 745, 1518 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 180, 298, 497, 626, 962, 1963, 2524, 2525 |
| BsmAI | GTCTC | 4 cut(s) | 984, 1036, 1457, 2229 |
| BsmBI | CGTCTC | 1 cut(s) | 1036 |
| BsmFI | GGGAC | 2 cut(s) | 745, 1518 |
| BsmI | GAATGC | 2 cut(s) | 1483, 2347 |
| BsnI | GGCC | 3 cut(s) | 1621, 1635, 1956 |
| Bso31I | GGTCTC | 1 cut(s) | 984 |
| BsoBI | CYCGRG | 1 cut(s) | 1927 |
| Bsp1286I | GDGCHC | 4 cut(s) | 505, 593, 1803, 2762 |
| Bsp1407I | TGTACA | 1 cut(s) | 1300 |
| Bsp19I | CCATGG | 1 cut(s) | 1961 |
| BspACI | CCGC | 1 cut(s) | 2511 |
| BspANI | GGCC | 3 cut(s) | 1621, 1635, 1956 |
| BspCNI | CTCAG | 9 cut(s) | 289, 360, 594, 756, 1400, 1782, 2052, 2239, 2710 |
| BspHI | TCATGA | 1 cut(s) | 2837 |
| BspLI | GGNNCC | 6 cut(s) | 38, 92, 303, 1506, 1507, 2673 |
| BspMAI | CTGCAG | 2 cut(s) | 703, 865 |
| BspMI | ACCTGC | 1 cut(s) | 854 |
| BspOI | GCTAGC | 1 cut(s) | 1907 |
| BspPI | GGATC | 6 cut(s) | 422, 661, 1101, 1186, 1919, 2490 |
| BspT107I | GGYRCC | 2 cut(s) | 90, 2671 |
| BspTNI | GGTCTC | 1 cut(s) | 984 |
| BsrDI | GCAATG | 4 cut(s) | 1977, 2268, 2273, 2352 |
| BsrGI | TGTACA | 1 cut(s) | 1300 |
| BssECI | CCNNGG | 6 cut(s) | 790, 1616, 1961, 2523, 2524, 2829 |
| BssSI | CACGAG | 1 cut(s) | 1796 |
| BssT1I | CCWWGG | 2 cut(s) | 1961, 2829 |
| Bst2BI | CACGAG | 1 cut(s) | 1796 |
| Bst2UI | CCWGG | 6 cut(s) | 792, 1617, 2126, 2253, 2412, 2525 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 803, 1349 |
| BstAUI | TGTACA | 1 cut(s) | 1300 |
| BstC8I | GCNNGC | 2 cut(s) | 1901, 1905 |
| BstDSI | CCRYGG | 1 cut(s) | 1961 |
| BstMAI | GTCTC | 4 cut(s) | 984, 1036, 1457, 2229 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 803, 812, 821, 941, 1280, 1349, 1600, 2031 |
| BstNI | CCWGG | 6 cut(s) | 792, 1617, 2126, 2253, 2412, 2525 |
| BstNSI | RCATGY | 2 cut(s) | 1274, 2465 |
| BstSCI | CCNGG | 8 cut(s) | 790, 962, 1615, 1975, 2124, 2251, 2410, 2523 |
| BstSFI | CTRYAG | 6 cut(s) | 237, 282, 461, 699, 861, 2115 |
| BstSLI | GKGCMC | 1 cut(s) | 2762 |
| BstV1I | GCAGC | 5 cut(s) | 808, 818, 1110, 1612, 2618 |
| BstV2I | GAAGAC | 1 cut(s) | 511 |
| BstX2I | RGATCY | 4 cut(s) | 1178, 1718, 1982, 2599 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1245, 1674 |
| BstYI | RGATCY | 4 cut(s) | 1178, 1718, 1982, 2599 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1387, 2060 |
| BsuRI | GGCC | 3 cut(s) | 1621, 1635, 1956 |
| BtgI | CCRYGG | 1 cut(s) | 1961 |
| BtgZI | GCGATG | 1 cut(s) | 1718 |
| BtsI | GCAGTG | 1 cut(s) | 2656 |
| BveI | ACCTGC | 1 cut(s) | 854 |
| Cac8I | GCNNGC | 2 cut(s) | 1901, 1905 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1466, 2131, 2655 |
| CciI | TCATGA | 1 cut(s) | 2837 |
| Cfr13I | GGNCC | 7 cut(s) | 37, 254, 1391, 1505, 1619, 1955, 2414 |
| CseI | GACGC | 1 cut(s) | 1142 |
| CsiI | ACCWGGT | 1 cut(s) | 2410 |
| Csp6I | GTAC | 5 cut(s) | 234, 969, 1301, 1486, 1629 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1043, 1078 |
| CviQI | GTAC | 5 cut(s) | 234, 969, 1301, 1486, 1629 |
| DriI | GACNNNNNGTC | 1 cut(s) | 889 |
| EaeI | YGGCCR | 1 cut(s) | 1633 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 889 |
| Ecl136II | GAGCTC | 2 cut(s) | 503, 591 |
| Eco130I | CCWWGG | 2 cut(s) | 1961, 2829 |
| Eco24I | GRGCYC | 2 cut(s) | 505, 593 |
| Eco31I | GGTCTC | 1 cut(s) | 984 |
| Eco47I | GGWCC | 5 cut(s) | 37, 254, 1391, 1505, 2414 |
| Eco53kI | GAGCTC | 2 cut(s) | 503, 591 |
| Eco57I | CTGAAG | 4 cut(s) | 573, 1488, 2027, 2562 |
| Eco81I | CCTNAGG | 2 cut(s) | 1387, 2060 |
| Eco88I | CYCGRG | 1 cut(s) | 1927 |
| EcoICRI | GAGCTC | 2 cut(s) | 503, 591 |
| EcoO109I | RGGNCCY | 3 cut(s) | 37, 1505, 1955 |
| EcoRI | GAATTC | 2 cut(s) | 561, 1320 |
| EcoRII | CCWGG | 6 cut(s) | 790, 1615, 2124, 2251, 2410, 2523 |
| EcoT14I | CCWWGG | 2 cut(s) | 1961, 2829 |
| EcoT22I | ATGCAT | 3 cut(s) | 406, 1263, 1710 |
| EcoT38I | GRGCYC | 2 cut(s) | 505, 593 |
| ErhI | CCWWGG | 2 cut(s) | 1961, 2829 |
| Esp3I | CGTCTC | 1 cut(s) | 1036 |
| FaqI | GGGAC | 2 cut(s) | 745, 1518 |
| FauNDI | CATATG | 2 cut(s) | 1138, 1257 |
| FblI | GTMKAC | 2 cut(s) | 124, 2173 |
| Fnu4HI | GCNGC | 5 cut(s) | 807, 822, 1124, 1601, 2607 |
| FriOI | GRGCYC | 2 cut(s) | 505, 593 |
| Fsp4HI | GCNGC | 5 cut(s) | 807, 822, 1124, 1601, 2607 |
| FspBI | CTAG | 6 cut(s) | 825, 1451, 1904, 2324, 2423, 2610 |
| GluI | GCNGC | 5 cut(s) | 807, 822, 1124, 1601, 2607 |
| GsaI | CCCAGC | 1 cut(s) | 184 |
| GsuI | CTGGAG | 2 cut(s) | 519, 813 |
| HaeIII | GGCC | 3 cut(s) | 1621, 1635, 1956 |
| HapII | CCGG | 2 cut(s) | 963, 1976 |
| HgaI | GACGC | 1 cut(s) | 1142 |
| HincII | GTYRAC | 3 cut(s) | 1858, 2122, 2174 |
| HindII | GTYRAC | 3 cut(s) | 1858, 2122, 2174 |
| HindIII | AAGCTT | 1 cut(s) | 1843 |
| HinfI | GANTC | 6 cut(s) | 733, 1215, 1234, 2624, 2702, 2781 |
| HpaII | CCGG | 2 cut(s) | 963, 1976 |
| HphI | GGTGA | 4 cut(s) | 878, 1261, 1391, 2400 |
| HpyAV | CCTTC | 6 cut(s) | 641, 1463, 1932, 2555, 2569, 2614 |
| HpyCH4IV | ACGT | 2 cut(s) | 2396, 2428 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 803, 812, 821, 941, 1280, 1349, 1600, 2031 |
| HpySE526I | ACGT | 2 cut(s) | 2396, 2428 |
| KflI | GGGWCCC | 1 cut(s) | 1505 |
| LmnI | GCTCC | 3 cut(s) | 166, 500, 794 |
| Lsp1109I | GCAGC | 5 cut(s) | 808, 818, 1110, 1612, 2618 |
| MabI | ACCWGGT | 1 cut(s) | 2410 |
| MaeI | CTAG | 6 cut(s) | 825, 1451, 1904, 2324, 2423, 2610 |
| MaeII | ACGT | 2 cut(s) | 2396, 2428 |
| MaeIII | GTNAC | 7 cut(s) | 1567, 1892, 2194, 2392, 2651, 2775, 2816 |
| MboII | GAAGA | 8 cut(s) | 284, 511, 919, 938, 1004, 1664, 2555, 2609 |
| MfeI | CAATTG | 1 cut(s) | 249 |
| MflI | RGATCY | 4 cut(s) | 1178, 1718, 1982, 2599 |
| MhlI | GDGCHC | 4 cut(s) | 505, 593, 1803, 2762 |
| MlyI | GAGTC | 2 cut(s) | 727, 1243 |
| MmeI | TCCRAC | 4 cut(s) | 281, 1454, 1930, 2819 |
| Mph1103I | ATGCAT | 3 cut(s) | 406, 1263, 1710 |
| MseI | TTAA | 5 cut(s) | 222, 675, 1610, 1680, 1815 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2340, 2497 |
| MspA1I | CMGCKG | 1 cut(s) | 180 |
| MspI | CCGG | 2 cut(s) | 963, 1976 |
| MspR9I | CCNGG | 8 cut(s) | 792, 964, 1617, 1977, 2126, 2253, 2412, 2525 |
| MunI | CAATTG | 1 cut(s) | 249 |
| Mva1269I | GAATGC | 2 cut(s) | 1483, 2347 |
| MvaI | CCWGG | 6 cut(s) | 792, 1617, 2126, 2253, 2412, 2525 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 803, 812, 821, 941, 1280, 1349, 1600, 2031 |
| NciI | CCSGG | 2 cut(s) | 964, 1977 |
| NcoI | CCATGG | 1 cut(s) | 1961 |
| NdeI | CATATG | 2 cut(s) | 1138, 1257 |
| NheI | GCTAGC | 1 cut(s) | 1903 |
| NlaIV | GGNNCC | 6 cut(s) | 38, 92, 303, 1506, 1507, 2673 |
| NmeAIII | GCCGAG | 1 cut(s) | 1661 |
| NmuCI | GTSAC | 6 cut(s) | 1567, 1892, 2194, 2392, 2651, 2775 |
| NsiI | ATGCAT | 3 cut(s) | 406, 1263, 1710 |
| NspI | RCATGY | 2 cut(s) | 1274, 2465 |
| PaeR7I | CTCGAG | 1 cut(s) | 1927 |
| PagI | TCATGA | 1 cut(s) | 2837 |
| PaqCI | CACCTGC | 1 cut(s) | 854 |
| PasI | CCCWGGG | 1 cut(s) | 2524 |
| PciI | ACATGT | 1 cut(s) | 2461 |
| PctI | GAATGC | 2 cut(s) | 1483, 2347 |
| PfeI | GAWTC | 4 cut(s) | 1215, 2624, 2702, 2781 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 180, 497 |
| PkrI | GCNGC | 5 cut(s) | 808, 823, 1125, 1602, 2608 |
| PleI | GAGTC | 2 cut(s) | 727, 1242 |
| PpsI | GAGTC | 2 cut(s) | 727, 1242 |
| PpuMI | RGGWCCY | 2 cut(s) | 37, 1505 |
| PscI | ACATGT | 1 cut(s) | 2461 |
| PsiI | TTATAA | 2 cut(s) | 1733, 1880 |
| Psp124BI | GAGCTC | 2 cut(s) | 505, 593 |
| Psp5II | RGGWCCY | 2 cut(s) | 37, 1505 |
| Psp6I | CCWGG | 6 cut(s) | 790, 1615, 2124, 2251, 2410, 2523 |
| PspFI | CCCAGC | 1 cut(s) | 180 |
| PspGI | CCWGG | 6 cut(s) | 790, 1615, 2124, 2251, 2410, 2523 |
| PspN4I | GGNNCC | 6 cut(s) | 38, 92, 303, 1506, 1507, 2673 |
| PspPI | GGNCC | 7 cut(s) | 37, 254, 1391, 1505, 1619, 1955, 2414 |
| PspPPI | RGGWCCY | 2 cut(s) | 37, 1505 |
| PspXI | VCTCGAGB | 1 cut(s) | 1927 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1647, 1679 |
| PstI | CTGCAG | 2 cut(s) | 703, 865 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1466, 2131, 2655 |
| PsuI | RGATCY | 4 cut(s) | 1178, 1718, 1982, 2599 |
| PvuII | CAGCTG | 1 cut(s) | 180 |
| RsaI | GTAC | 5 cut(s) | 235, 970, 1302, 1487, 1630 |
| RsaNI | GTAC | 5 cut(s) | 234, 969, 1301, 1486, 1629 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2340, 2497 |
| SacI | GAGCTC | 2 cut(s) | 505, 593 |
| SalI | GTCGAC | 1 cut(s) | 2172 |
| SaqAI | TTAA | 5 cut(s) | 222, 675, 1610, 1680, 1815 |
| SatI | GCNGC | 5 cut(s) | 807, 822, 1124, 1601, 2607 |
| Sau96I | GGNCC | 7 cut(s) | 37, 254, 1391, 1505, 1619, 1955, 2414 |
| ScaI | AGTACT | 2 cut(s) | 1487, 1630 |
| SchI | GAGTC | 2 cut(s) | 727, 1243 |
| ScrFI | CCNGG | 8 cut(s) | 792, 964, 1617, 1977, 2126, 2253, 2412, 2525 |
| SduI | GDGCHC | 4 cut(s) | 505, 593, 1803, 2762 |
| SexAI | ACCWGGT | 1 cut(s) | 2410 |
| SfcI | CTRYAG | 6 cut(s) | 237, 282, 461, 699, 861, 2115 |
| Sfr274I | CTCGAG | 1 cut(s) | 1927 |
| SinI | GGWCC | 5 cut(s) | 37, 254, 1391, 1505, 2414 |
| SlaI | CTCGAG | 1 cut(s) | 1927 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2340, 2497 |
| SmlI | CTYRAG | 4 cut(s) | 755, 936, 1221, 1927 |
| SmoI | CTYRAG | 4 cut(s) | 755, 936, 1221, 1927 |
| SpeI | ACTAGT | 1 cut(s) | 2323 |
| SsiI | CCGC | 1 cut(s) | 2511 |
| SspI | AATATT | 1 cut(s) | 12 |
| SspMI | CTAG | 6 cut(s) | 825, 1451, 1904, 2324, 2423, 2610 |
| SstI | GAGCTC | 2 cut(s) | 505, 593 |
| StyD4I | CCNGG | 8 cut(s) | 790, 962, 1615, 1975, 2124, 2251, 2410, 2523 |
| StyI | CCWWGG | 2 cut(s) | 1961, 2829 |
| TaiI | ACGT | 2 cut(s) | 2399, 2431 |
| TaqI | TCGA | 4 cut(s) | 51, 1625, 1928, 2173 |
| TaqII | GACCGA | 1 cut(s) | 617 |
| TatI | WGTACW | 5 cut(s) | 233, 968, 1300, 1485, 1628 |
| TfiI | GAWTC | 4 cut(s) | 1215, 2624, 2702, 2781 |
| Tru1I | TTAA | 5 cut(s) | 222, 675, 1610, 1680, 1815 |
| Tru9I | TTAA | 5 cut(s) | 222, 675, 1610, 1680, 1815 |
| TseFI | GTSAC | 6 cut(s) | 1567, 1892, 2194, 2392, 2651, 2775 |
| TseI | GCWGC | 5 cut(s) | 806, 821, 1123, 1600, 2606 |
| Tsp45I | GTSAC | 6 cut(s) | 1567, 1892, 2194, 2392, 2651, 2775 |
| TspGWI | ACGGA | 1 cut(s) | 1881 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 180, 497 |
| VpaK11BI | GGWCC | 5 cut(s) | 37, 254, 1391, 1505, 2414 |
| XapI | RAATTY | 6 cut(s) | 561, 1148, 1305, 1320, 1687, 1870 |
| XceI | RCATGY | 2 cut(s) | 1274, 2465 |
| XhoI | CTCGAG | 1 cut(s) | 1927 |
| XmiI | GTMKAC | 2 cut(s) | 124, 2173 |
| XspI | CTAG | 6 cut(s) | 825, 1451, 1904, 2324, 2423, 2610 |
| ZrmI | AGTACT | 2 cut(s) | 1487, 1630 |
| Zsp2I | ATGCAT | 3 cut(s) | 406, 1263, 1710 |