Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004177

Physical Location & Seq

Genomic Coordinates Forward (+)

34906015 .. 34911136

Gene Structure 5122 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG194400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGAAGAGGAGATATTAGATGAAAGTGATAGTGATATTGGCAATGAAGTCCATCCATTGGATGACGAACCCAAAGATTTTGGTGTCAGCATTGTTACATCAGTCACAAGCAAAACAGTGAATGTTGATGGTCCTGTTTCTAACTTTACTGATAGTACTAAACCGGGGATGCCAATTGGAGAGGATTTACAGAGGCAACATTCTTCTCCAAAGAGATTAGATAGGTTAAATTGCCTTCGGCCAGATGATTGTCCATTAGATGAAGACACTTCTGTTGTCCAACATAATGGCAAGTTAACCAAAATGCTTAGTGGGTCTGAAAGAATTGGTTTGAACTGGCCGGAGCGTCCATTGAACTTGCTATCTCAGCACTTATTAGAGCGACGAAATTCCTTTAGACCAACGAAGTCTTTCAAGTCCTCAAAATCTTTCAGGACACACAATTCTTTCAAGTCAGCTGCAAATGACATGGCACCAGAATTAGCTTTGCTTGGAGGGATTGATCTTGAATCTCTCATGAAACGGGAACGAAGACCATCATATGTAAGGATAGTAAGTAAGCAGATGGTTGGGATTTTCCTAACTGTATGGGTTCGTAGGAGCTTACGTAAACACATTCAGAACTTAAAGGTGTCAACTGTTGGTGTTGGTGTTATGGGATACATTGGTAACAAGGGATCTGTATCTGTGAGTATGTCCATATATCAGACACTGTTTTGTTTCGTGTGCACTCACCTGACAGCAGGTGAAAGGGAGGTAGATGAATCAAAAAGAAATGCTGATGTGCAAGAAATTCATCGGAGAACTCACTTTCATTCGTTTTCTGGTATTGGGCTTCCGAAAAGTATCCATGACCATGAAAGAATAATTTGGTTGGGTGATCTAAATTATCGTATCAACTTGTCATATGAGAAAACACAAGAACTCATCTCCAAAAAGGAGTGGTCCCAGTTGGCTGAGAAGGACCAGCTTGCACGACAATTTAAAAAAGGTCATGCATTTGATGGATGGTCTGAGGGTGTTCTAAATTTCCCGCCAACGTATAAGTATGAGATGAATTCAGACAAGTATTATGGAGAGGATCCAAAGGGTGGAAGGCGGACTCCAGCATGGTGTGACCGCATTCTTTCATATGGCCGAGGAATGAGGTTACTGCAGTATAGAAGGATTGAACATAAATTTTCTGATCATCGACCAGTGACTGCTACTTATATGGCAGAGGTTGAGGTTTTTTCTGCTAGGAGGCTTCAGCGGGCTCTCACATTCACTGATGCAGAGATTGAAAATGAGGAAATTGCAACGGATATGGGTATTGATGTTGGAATGAACAACTTAAAATTGGAACAGGGTATATCTGATTGGGATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004445 GO:0005975 GO:0006066 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009791 GO:0009845 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0030258 GO:0032501 GO:0032502 GO:0032957 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0043647 GO:0044237 GO:0044238 GO:0044255 GO:0044262 GO:0044281 GO:0044282 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046486 GO:0046488 GO:0046838 GO:0046839 GO:0046855 GO:0046856 GO:0048856 GO:0052745 GO:0052866 GO:0071545 GO:0071704 GO:0090351 GO:0106019 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko03010 ko04070 map00562 map01100 map03010 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

456

Amino Acids

52.18

Weight (kDa)

6.96

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	169 - 402	2.1e-67	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71710 AT1G71710
fragaria_vesca	FvH4_2g12960 FvH4_2g12960 FvH4_2g12960 FvH4_2g12960 FvH4_2g12960 FvH4_2g12960
malus_domestica	MD05G1034300.v1.1 MD10G1036300.v1.1
prunus_persica	Prupe.8G042000_v2.0.a1 Prupe.8G042000_v2.0.a1 Prupe.8G042000_v2.0.a1 Prupe.8G042000_v2.0.a1 Prupe.8G042000_v2.0.a1 Prupe.8G042000_v2.0.a1 Prupe.8G042000_v2.0.a1
pyrus_communis	pycom05g02480 pycom10g02470
rosa_chinensis	RchiOBHm_Chr6g0274091
rosa_laevigata	RLG00000013579
rosa_multiflora	Rmu_co8515147.1_g000001 Rmu_ssc0000413.1_g000006
rosa_roxburghii	Rroxscaffold_7G00194670
rosa_rugosa	Rorug06G0078500 Rorug06G0078500 Rorug06G0078500
rosa_samantha	Rh6AG194400 Rh6BG198400 Rh6CG198300 Rh6DG189800
rosa_wichuraiana	Rw0G007940 Rw6G016940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	734
Acc36I	ACCTGC	1 cut(s)	734
AccB1I	GGYRCC	1 cut(s)	472
AccB7I	CCANNNNNTGG	2 cut(s)	58, 1091
AciI	CCGC	4 cut(s)	1034, 1099, 1120, 1252
AclWI	GGATC	3 cut(s)	685, 1076, 1089
AcoI	YGGCCR	3 cut(s)	239, 338, 1135
AcsI	RAATTY	5 cut(s)	388, 792, 1027, 1057, 1178
AcuI	CTGAAG	1 cut(s)	1232
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	2 cut(s)	58, 1091
AgsI	TTSAA	7 cut(s)	334, 355, 415, 451, 509, 1172, 1283
AluBI	AGCT	4 cut(s)	458, 485, 603, 970
AluI	AGCT	4 cut(s)	458, 485, 603, 970
Alw21I	GWGCWC	1 cut(s)	731
Alw44I	GTGCAC	1 cut(s)	727
AlwI	GGATC	3 cut(s)	685, 1076, 1089
AlwNI	CAGNNNCTG	2 cut(s)	712, 1202
AoxI	GGCC	3 cut(s)	239, 338, 1135
ApaLI	GTGCAC	1 cut(s)	727
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	5 cut(s)	388, 792, 1027, 1057, 1178
Asp700I	GAANNNNTTC	1 cut(s)	410
AspS9I	GGNCC	3 cut(s)	131, 945, 964
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	3 cut(s)	725, 758, 890
AvaII	GGWCC	3 cut(s)	131, 945, 964
BaeGI	GKGCMC	1 cut(s)	731
BaeI	ACNNNNGTAYC	2 cut(s)	652, 685
BamHI	GGATCC	1 cut(s)	1081
BanI	GGYRCC	1 cut(s)	472
BanII	GRGCYC	1 cut(s)	1258
BbsI	GAAGAC	2 cut(s)	270, 538
Bbv12I	GWGCWC	1 cut(s)	731
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	6 cut(s)	60, 122, 544, 559, 998, 1002
BciVI	GTATCC	2 cut(s)	653, 857
BclI	TGATCA	1 cut(s)	1186
BcnI	CCSGG	1 cut(s)	165
BfaI	CTAG	1 cut(s)	1239
BfmI	CTRYAG	1 cut(s)	1154
BfuAI	ACCTGC	1 cut(s)	734
BfuI	GTATCC	2 cut(s)	653, 857
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
BmcAI	AGTACT	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	3 cut(s)	131, 945, 964
BmgT120I	GGNCC	3 cut(s)	131, 945, 964
BmiI	GGNNCC	3 cut(s)	474, 947, 1083
BmrFI	CCNGG	1 cut(s)	165
BmrI	ACTGGG	1 cut(s)	943
BmsI	GCATC	2 cut(s)	159, 1261
BmuI	ACTGGG	1 cut(s)	943
BpiI	GAAGAC	2 cut(s)	270, 538
BpmI	CTGGAG	1 cut(s)	1089
BpuMI	CCSGG	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	608
BsaBI	GATNNNNATC	2 cut(s)	682, 1362
BsaJI	CCNNGG	2 cut(s)	164, 1138
BsaXI	ACNNNNNCTCC	2 cut(s)	592, 622
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 1091
Bse1I	ACTGG	3 cut(s)	341, 949, 1196
Bse3DI	GCAATG	1 cut(s)	49
Bse8I	GATNNNNATC	2 cut(s)	682, 1362
BseDI	CCNNGG	2 cut(s)	164, 1138
BseGI	GGATG	4 cut(s)	52, 67, 174, 1013
BseJI	GATNNNNATC	2 cut(s)	682, 1362
BseLI	CCNNNNNNNGG	2 cut(s)	58, 1091
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	3 cut(s)	380, 948, 1005
BseNI	ACTGG	3 cut(s)	341, 949, 1196
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	731
BseXI	GCAGC	1 cut(s)	445
BshFI	GGCC	3 cut(s)	241, 340, 1137
BshNI	GGYRCC	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	731
BsiSI	CCGG	2 cut(s)	164, 341
BslFI	GGGAC	1 cut(s)	931
BslI	CCNNNNNNNGG	2 cut(s)	58, 1091
BsmFI	GGGAC	1 cut(s)	931
BsmI	GAATGC	1 cut(s)	1122
BsnI	GGCC	3 cut(s)	241, 340, 1137
Bsp1286I	GDGCHC	2 cut(s)	731, 1258
Bsp143I	GATC	6 cut(s)	502, 677, 880, 1081, 1186, 1363
BspACI	CCGC	4 cut(s)	1034, 1099, 1120, 1252
BspANI	GGCC	3 cut(s)	241, 340, 1137
BspCNI	CTCAG	3 cut(s)	379, 949, 1006
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	3 cut(s)	474, 947, 1083
BspMAI	CTGCAG	1 cut(s)	1158
BspMI	ACCTGC	1 cut(s)	734
BspPI	GGATC	3 cut(s)	685, 1076, 1089
BspT107I	GGYRCC	1 cut(s)	472
BsrDI	GCAATG	1 cut(s)	49
BsrI	ACTGG	3 cut(s)	341, 949, 1196
BssECI	CCNNGG	2 cut(s)	164, 1138
BssMI	GATC	6 cut(s)	502, 677, 880, 1081, 1186, 1363
Bst4CI	ACNGT	4 cut(s)	118, 586, 640, 714
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	2 cut(s)	972, 1254
BstDEI	CTNAG	4 cut(s)	308, 366, 957, 1014
BstF5I	GGATG	4 cut(s)	52, 67, 174, 1013
BstKTI	GATC	6 cut(s)	505, 680, 883, 1084, 1189, 1366
BstMBI	GATC	6 cut(s)	502, 677, 880, 1081, 1186, 1363
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	1154
BstSLI	GKGCMC	1 cut(s)	731
BstSNI	TACGTA	1 cut(s)	608
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	2 cut(s)	270, 538
BstX2I	RGATCY	2 cut(s)	677, 1081
BstXI	CCANNNNNNTGG	1 cut(s)	287
BstYI	RGATCY	2 cut(s)	677, 1081
BsuI	GTATCC	2 cut(s)	653, 857
BsuRI	GGCC	3 cut(s)	241, 340, 1137
BtsCI	GGATG	4 cut(s)	52, 67, 174, 1013
BtsIMutI	CAGTG	4 cut(s)	123, 710, 1203, 1266
BveI	ACCTGC	1 cut(s)	734
Cac8I	GCNNGC	2 cut(s)	972, 1254
CaiI	CAGNNNCTG	2 cut(s)	712, 1202
CciI	TCATGA	1 cut(s)	516
Cfr13I	GGNCC	3 cut(s)	131, 945, 964
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	6 cut(s)	469, 517, 851, 857, 995, 1110
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	4 cut(s)	308, 366, 957, 1014
DpnI	GATC	6 cut(s)	504, 679, 882, 1083, 1188, 1365
DpnII	GATC	6 cut(s)	502, 677, 880, 1081, 1186, 1363
DraI	TTTAAA	1 cut(s)	985
EaeI	YGGCCR	3 cut(s)	239, 338, 1135
EciI	GGCGGA	1 cut(s)	1114
Eco105I	TACGTA	1 cut(s)	608
Eco24I	GRGCYC	1 cut(s)	1258
Eco47I	GGWCC	3 cut(s)	131, 945, 964
Eco57I	CTGAAG	1 cut(s)	1232
EcoRI	GAATTC	1 cut(s)	1057
EcoT22I	ATGCAT	1 cut(s)	1000
EcoT38I	GRGCYC	1 cut(s)	1258
FaeI	CATG	6 cut(s)	472, 520, 854, 860, 998, 1113
FaqI	GGGAC	1 cut(s)	931
FatI	CATG	6 cut(s)	468, 516, 850, 856, 994, 1109
FauI	CCCGC	2 cut(s)	1041, 1245
FauNDI	CATATG	3 cut(s)	541, 907, 1132
FbaI	TGATCA	1 cut(s)	1186
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	4 cut(s)	39, 74, 181, 1020
FriOI	GRGCYC	1 cut(s)	1258
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	1 cut(s)	1239
GluI	GCNGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	1089
HaeIII	GGCC	3 cut(s)	241, 340, 1137
HapII	CCGG	2 cut(s)	164, 341
HgaI	GACGC	1 cut(s)	335
Hin1II	CATG	6 cut(s)	472, 520, 854, 860, 998, 1113
HincII	GTYRAC	2 cut(s)	297, 636
HindII	GTYRAC	2 cut(s)	297, 636
HinfI	GANTC	3 cut(s)	509, 764, 1102
HpaI	GTTAAC	1 cut(s)	297
HpaII	CCGG	2 cut(s)	164, 341
HphI	GGTGA	3 cut(s)	725, 758, 890
Hpy166II	GTNNAC	4 cut(s)	297, 611, 636, 729
Hpy188I	TCNGA	9 cut(s)	319, 621, 708, 801, 840, 1015, 1063, 1186, 1357
Hpy188III	TCNNGA	3 cut(s)	433, 506, 517
Hpy8I	GTNNAC	4 cut(s)	297, 611, 636, 729
Hpy99I	CGWCG	1 cut(s)	387
HpyAV	CCTTC	4 cut(s)	245, 955, 1089, 1158
HpyCH4III	ACNGT	4 cut(s)	118, 586, 640, 714
HpyCH4IV	ACGT	2 cut(s)	607, 1040
HpyCH4V	TGCA	8 cut(s)	461, 729, 787, 974, 998, 1156, 1274, 1298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	4 cut(s)	308, 366, 957, 1014
HpySE526I	ACGT	2 cut(s)	607, 1040
Hsp92II	CATG	6 cut(s)	472, 520, 854, 860, 998, 1113
Ksp22I	TGATCA	1 cut(s)	1186
KspAI	GTTAAC	1 cut(s)	297
Kzo9I	GATC	6 cut(s)	502, 677, 880, 1081, 1186, 1363
LmnI	GCTCC	2 cut(s)	343, 600
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	2 cut(s)	159, 1261
MaeI	CTAG	1 cut(s)	1239
MaeII	ACGT	2 cut(s)	607, 1040
MaeIII	GTNAC	6 cut(s)	94, 103, 668, 1115, 1149, 1198
MalI	GATC	6 cut(s)	504, 679, 882, 1083, 1188, 1365
MboI	GATC	6 cut(s)	502, 677, 880, 1081, 1186, 1363
MboII	GAAGA	4 cut(s)	17, 195, 275, 543
MfeI	CAATTG	1 cut(s)	174
MflI	RGATCY	2 cut(s)	677, 1081
MhlI	GDGCHC	2 cut(s)	731, 1258
MlyI	GAGTC	1 cut(s)	1096
MmeI	TCCRAC	2 cut(s)	304, 1300
Mph1103I	ATGCAT	1 cut(s)	1000
MroXI	GAANNNNTTC	1 cut(s)	410
MseI	TTAA	6 cut(s)	227, 296, 626, 984, 1334, 1369
MslI	CAYNNNNRTG	1 cut(s)	855
MspA1I	CMGCKG	2 cut(s)	458, 1252
MspI	CCGG	2 cut(s)	164, 341
MspR9I	CCNGG	1 cut(s)	165
MunI	CAATTG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	1122
MwoI	GCNNNNNNNGC	1 cut(s)	367
NciI	CCSGG	1 cut(s)	165
NdeI	CATATG	3 cut(s)	541, 907, 1132
NdeII	GATC	6 cut(s)	502, 677, 880, 1081, 1186, 1363
NlaIII	CATG	6 cut(s)	472, 520, 854, 860, 998, 1113
NlaIV	GGNNCC	3 cut(s)	474, 947, 1083
NmeAIII	GCCGAG	1 cut(s)	1163
NmuCI	GTSAC	3 cut(s)	103, 1115, 1198
NsiI	ATGCAT	1 cut(s)	1000
PagI	TCATGA	1 cut(s)	516
PaqCI	CACCTGC	1 cut(s)	734
PctI	GAATGC	1 cut(s)	1122
PdmI	GAANNNNTTC	1 cut(s)	410
PfeI	GAWTC	2 cut(s)	509, 764
PflMI	CCANNNNNTGG	2 cut(s)	58, 1091
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	1096
PpsI	GAGTC	1 cut(s)	1096
Ppu21I	YACGTR	1 cut(s)	608
PspN4I	GGNNCC	3 cut(s)	474, 947, 1083
PspPI	GGNCC	3 cut(s)	131, 945, 964
PstI	CTGCAG	1 cut(s)	1158
PstNI	CAGNNNCTG	2 cut(s)	712, 1202
PsuI	RGATCY	2 cut(s)	677, 1081
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	855
SaqAI	TTAA	6 cut(s)	227, 296, 626, 984, 1334, 1369
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	6 cut(s)	502, 677, 880, 1081, 1186, 1363
Sau96I	GGNCC	3 cut(s)	131, 945, 964
ScaI	AGTACT	1 cut(s)	157
SchI	GAGTC	1 cut(s)	1096
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	2 cut(s)	731, 1258
SfaNI	GCATC	2 cut(s)	159, 1261
SfcI	CTRYAG	1 cut(s)	1154
SinI	GGWCC	3 cut(s)	131, 945, 964
SmiMI	CAYNNNNRTG	1 cut(s)	855
SnaBI	TACGTA	1 cut(s)	608
SsiI	CCGC	4 cut(s)	1034, 1099, 1120, 1252
SspMI	CTAG	1 cut(s)	1239
StyD4I	CCNGG	1 cut(s)	163
TaaI	ACNGT	4 cut(s)	118, 586, 640, 714
TaiI	ACGT	2 cut(s)	610, 1043
TaqI	TCGA	1 cut(s)	1192
TatI	WGTACW	1 cut(s)	155
TfiI	GAWTC	2 cut(s)	509, 764
Tru1I	TTAA	6 cut(s)	227, 296, 626, 984, 1334, 1369
Tru9I	TTAA	6 cut(s)	227, 296, 626, 984, 1334, 1369
TscAI	CASTG	4 cut(s)	123, 717, 1203, 1273
TseFI	GTSAC	3 cut(s)	103, 1115, 1198
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	3 cut(s)	103, 1115, 1198
TspGWI	ACGGA	1 cut(s)	1316
TspRI	CASTG	4 cut(s)	123, 717, 1203, 1273
Van91I	CCANNNNNTGG	2 cut(s)	58, 1091
VneI	GTGCAC	1 cut(s)	727
VpaK11BI	GGWCC	3 cut(s)	131, 945, 964
XapI	RAATTY	5 cut(s)	388, 792, 1027, 1057, 1178
XmnI	GAANNNNTTC	1 cut(s)	410
XspI	CTAG	1 cut(s)	1239
ZrmI	AGTACT	1 cut(s)	157
Zsp2I	ATGCAT	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.