Rh6CG502100

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0015557
Physical Location & Seq
Reverse (-)
66507990 .. 66509069
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG502100.1

Sequence Viewer

Length: 1080 bp
ATGGCGGTGTTCTTCAGATTCGGTGAAGGCGTAGCCCGGAGCAGCAAAGAGCCACAAAAACTGTTCAAGTTGCTAGACATGTTCGAGTCATTGGAGAAACTCAAGCCTGCATTCTCTCAAGTCTTCGAAGGTGAAGCAGGGACTGACATTTGCGTTCGATTCAGAGAACTCGAGAAGCTTCTGATTCACGCTTCGAGTAAAGTTTTCTGGGAGTTTGGGCTTCAAATTGAAGGAAACTCAGATGGGGTACCTCCCCCGCAAGATGGGTCAGTCCCCAAAATTGTAAGGTACGCTGTGAATTACATGAAGTACTTAGCAACAGAGGCTTACTCTGTTCCCATGGCCAGAGTCCTCAGAACAGAGCAGATTTGGAAAGCTGGGATTCTGTCCAGACCCGAATCCGACGAGAATCTTCTCAGAGATGCCGTTTCCCACATCATGGAAGCTCTGCAGAGGAATGTAGAAGCGAAACAGTCGGGTTATCGGGTCGATAAGTTGGCTCTGCCCCATGTTTTTGCAATGAACACGTACTGGTATATTTACATGAGGACCAAAAACACAGAGCTAGGGAAGCTCGTGGGAGACCAATACATGAAGAAAAATTACAAAGTAATAGCAGAGGAATCGGCTTACATGTATCAGAAGATAGTGTGGGTTCCTCTGGTTAGGGTTTTGGAGAAAGATGATGATTTGGAGCTGGAGAGCAAGGAAGCAATGGTGGGAATGGTTAGGGCGAAAATGGAGGCGTTTATGAAGGGCTTGGATGATGTATCAAAGAGGCACAAAGGGTACTATAGTATTCCTGACGAAGATTTGAGGGAGCAGATTAGATTGGCGACGGTGAAGCTTGTGGTTCCAGCGTACAGTAAGTTCTTGGACTCGTTCTCGGTTTCGTTGCCGGGGAAGTCCTCGTATTTGAGCCCTGAGTCAGTTCAGCAGTTGCTGTGTCAGATATTTGAGGGTGGGGAGGTGAAGCTTAAGAGGCGTGGGTCTAGGGATCGGACGGCGGGAGGGAGCTCGGCGGTGGACGGTGCGGTTAAGGGCTTTCGACGCACTAGGTCAAACACCAGTGAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

359

Amino Acids

40.88

Weight (kDa)

9.07

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_C PF03081 3 - 315 7.9e-68 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015557)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32950
malus_domestica MD08G1081000.v1.1 MD15G1068000.v1.1
prunus_persica Prupe.1G422000_v2.0.a1
pyrus_communis pycom15g06440
rosa_chinensis RchiOBHm_Chr6g0309751
rosa_laevigata RLG00000010538
rosa_multiflora Rmu_sc0007632.1_g000013
rosa_roxburghii Rroxscaffold_7G00159210
rosa_rugosa Rorug06G0374200
rosa_samantha Rh6AG487800 Rh6BG497400 Rh6CG502100 Rh6CG502200 Rh6DG488400
rosa_wichuraiana Rw6G042480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 247
AccB1I GGYRCC 1 cut(s) 247
AccB7I CCANNNNNTGG 1 cut(s) 439
AciI CCGC 5 cut(s) 5, 257, 1007, 1022, 1034
AclWI GGATC 1 cut(s) 1005
AcoI YGGCCR 1 cut(s) 342
AfaI GTAC 6 cut(s) 249, 290, 311, 530, 791, 863
AfiI CCNNNNNNNGG 2 cut(s) 263, 439
AflII CTTAAG 1 cut(s) 977
AflIII ACRYGT 3 cut(s) 78, 525, 633
AgsI TTSAA 3 cut(s) 67, 224, 230
AluBI AGCT 9 cut(s) 178, 377, 446, 565, 574, 697, 847, 976, 1017
AluI AGCT 9 cut(s) 178, 377, 446, 565, 574, 697, 847, 976, 1017
Alw21I GWGCWC 1 cut(s) 1019
Alw26I GTCTC 1 cut(s) 576
AlwI GGATC 1 cut(s) 1005
AlwNI CAGNNNCTG 2 cut(s) 143, 943
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 42
Asp718I GGTACC 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 549
AsuC2I CCSGG 2 cut(s) 37, 900
AsuHPI GGTGA 4 cut(s) 35, 143, 853, 982
AsuII TTCGAA 1 cut(s) 126
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 1 cut(s) 549
BaeI ACNNNNGTAYC 2 cut(s) 781, 814
BalI TGGCCA 1 cut(s) 344
BanI GGYRCC 1 cut(s) 247
BanII GRGCYC 2 cut(s) 923, 1019
BarI GAAGNNNNNNTAC 2 cut(s) 587, 619
BauI CACGAG 1 cut(s) 575
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 1019
BbvI GCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 236, 257
BceAI ACGGC 2 cut(s) 410, 1020
BcgI CGANNNNNNTGC 2 cut(s) 606, 640
BcnI CCSGG 2 cut(s) 37, 900
BcoDI GTCTC 1 cut(s) 576
BfaI CTAG 4 cut(s) 74, 566, 993, 1056
BfmI CTRYAG 2 cut(s) 449, 793
BfrI CTTAAG 1 cut(s) 977
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 2 cut(s) 37, 900
Bme18I GGWCC 1 cut(s) 549
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 549
BmiI GGNNCC 3 cut(s) 249, 657, 855
BmrFI CCNGG 2 cut(s) 37, 900
BmsI GCATC 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 115
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpmI CTGGAG 1 cut(s) 719
Bpu14I TTCGAA 1 cut(s) 126
BpuEI CTTGAG 2 cut(s) 86, 102
BpuMI CCSGG 2 cut(s) 37, 900
BsaAI YACGTR 1 cut(s) 528
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 2 cut(s) 339, 899
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 439
Bse1I ACTGG 2 cut(s) 536, 1068
Bse3DI GCAATG 2 cut(s) 525, 720
BseDI CCNNGG 2 cut(s) 339, 899
BseGI GGATG 1 cut(s) 769
BseLI CCNNNNNNNGG 2 cut(s) 263, 439
BseMI GCAATG 2 cut(s) 525, 720
BseMII CTCAG 4 cut(s) 252, 367, 430, 915
BseNI ACTGG 2 cut(s) 536, 1068
BseXI GCAGC 1 cut(s) 54
BseYI CCCAGC 1 cut(s) 377
BshFI GGCC 1 cut(s) 344
BshNI GGYRCC 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 1019
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 2 cut(s) 37, 899
BslFI GGGAC 2 cut(s) 154, 257
BslI CCNNNNNNNGG 2 cut(s) 263, 439
BsmAI GTCTC 1 cut(s) 576
BsmFI GGGAC 2 cut(s) 154, 257
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 1 cut(s) 344
Bso31I GGTCTC 1 cut(s) 576
BsoBI CYCGRG 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 2 cut(s) 923, 1019
Bsp143I GATC 1 cut(s) 997
Bsp19I CCATGG 1 cut(s) 339
BspACI CCGC 5 cut(s) 5, 257, 1007, 1022, 1034
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 4 cut(s) 251, 366, 429, 916
BspLI GGNNCC 3 cut(s) 249, 657, 855
BspMAI CTGCAG 1 cut(s) 453
BspPI GGATC 1 cut(s) 1005
BspT104I TTCGAA 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 247
BspTI CTTAAG 1 cut(s) 977
BspTNI GGTCTC 1 cut(s) 576
BsrDI GCAATG 2 cut(s) 525, 720
BsrI ACTGG 2 cut(s) 536, 1068
BssECI CCNNGG 2 cut(s) 339, 899
BssMI GATC 1 cut(s) 997
BssSI CACGAG 1 cut(s) 575
BssT1I CCWWGG 1 cut(s) 339
Bst2BI CACGAG 1 cut(s) 575
Bst4CI ACNGT 5 cut(s) 63, 474, 841, 866, 1031
BstAFI CTTAAG 1 cut(s) 977
BstBAI YACGTR 1 cut(s) 528
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 5 cut(s) 238, 313, 353, 416, 924
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 769
BstKTI GATC 1 cut(s) 1000
BstMAI GTCTC 1 cut(s) 576
BstMBI GATC 1 cut(s) 997
BstMWI GCNNNNNNNGC 4 cut(s) 323, 571, 982, 1050
BstNSI RCATGY 2 cut(s) 82, 637
BstSCI CCNGG 2 cut(s) 35, 898
BstSFI CTRYAG 2 cut(s) 449, 793
BstV1I GCAGC 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 339
BtsCI GGATG 1 cut(s) 769
BtsIMutI CAGTG 1 cut(s) 1075
Cac8I GCNNGC 1 cut(s) 108
CaiI CAGNNNCTG 2 cut(s) 143, 943
Cfr13I GGNCC 1 cut(s) 549
CseI GACGC 1 cut(s) 1059
Csp6I GTAC 6 cut(s) 248, 289, 310, 529, 790, 862
CviAII CATG 8 cut(s) 79, 304, 340, 439, 509, 544, 592, 634
CviQI GTAC 6 cut(s) 248, 289, 310, 529, 790, 862
DdeI CTNAG 5 cut(s) 238, 313, 353, 416, 924
DpnI GATC 1 cut(s) 999
DpnII GATC 1 cut(s) 997
EaeI YGGCCR 1 cut(s) 342
Ecl136II GAGCTC 1 cut(s) 1017
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 2 cut(s) 923, 1019
Eco31I GGTCTC 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 549
Eco53kI GAGCTC 1 cut(s) 1017
Eco88I CYCGRG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 1017
EcoT14I CCWWGG 1 cut(s) 339
EcoT38I GRGCYC 2 cut(s) 923, 1019
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 8 cut(s) 82, 307, 343, 442, 512, 547, 595, 637
FaqI GGGAC 2 cut(s) 154, 257
FatI CATG 8 cut(s) 78, 303, 339, 438, 508, 543, 591, 633
FauI CCCGC 2 cut(s) 264, 1000
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 1 cut(s) 776
FriOI GRGCYC 2 cut(s) 923, 1019
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 4 cut(s) 74, 566, 993, 1056
GluI GCNGC 1 cut(s) 43
GsaI CCCAGC 1 cut(s) 381
GsuI CTGGAG 1 cut(s) 719
HaeIII GGCC 1 cut(s) 344
HapII CCGG 2 cut(s) 37, 899
HgaI GACGC 1 cut(s) 1059
Hin1II CATG 8 cut(s) 82, 307, 343, 442, 512, 547, 595, 637
HindIII AAGCTT 3 cut(s) 176, 845, 974
HpaII CCGG 2 cut(s) 37, 899
HphI GGTGA 4 cut(s) 35, 143, 853, 982
Hpy166II GTNNAC 1 cut(s) 1027
Hpy188III TCNNGA 3 cut(s) 172, 390, 803
Hpy8I GTNNAC 1 cut(s) 1027
Hpy99I CGWCG 3 cut(s) 407, 841, 1053
HpyAV CCTTC 4 cut(s) 20, 122, 224, 748
HpyCH4III ACNGT 5 cut(s) 63, 474, 841, 866, 1031
HpyCH4IV ACGT 1 cut(s) 527
HpyCH4V TGCA 3 cut(s) 110, 451, 518
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 571, 982, 1050
HpyF3I CTNAG 5 cut(s) 238, 313, 353, 416, 924
HpySE526I ACGT 1 cut(s) 527
Hsp92II CATG 8 cut(s) 82, 307, 343, 442, 512, 547, 595, 637
KpnI GGTACC 1 cut(s) 251
Kzo9I GATC 1 cut(s) 997
LmnI GCTCC 4 cut(s) 39, 694, 820, 1014
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 412
MaeI CTAG 4 cut(s) 74, 566, 993, 1056
MaeII ACGT 1 cut(s) 527
MalI GATC 1 cut(s) 999
MboI GATC 1 cut(s) 997
MboII GAAGA 6 cut(s) 4, 115, 404, 607, 655, 821
MhlI GDGCHC 2 cut(s) 923, 1019
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 4 cut(s) 225, 279, 298, 601
MluNI TGGCCA 1 cut(s) 344
MlyI GAGTC 4 cut(s) 95, 357, 872, 935
MmeI TCCRAC 1 cut(s) 426
Mox20I TGGCCA 1 cut(s) 344
MscI TGGCCA 1 cut(s) 344
MseI TTAA 2 cut(s) 978, 1038
Msp20I TGGCCA 1 cut(s) 344
MspCI CTTAAG 1 cut(s) 977
MspI CCGG 2 cut(s) 37, 899
MspR9I CCNGG 2 cut(s) 37, 900
Mva1269I GAATGC 1 cut(s) 110
MwoI GCNNNNNNNGC 4 cut(s) 323, 571, 982, 1050
NciI CCSGG 2 cut(s) 37, 900
NcoI CCATGG 1 cut(s) 339
NdeII GATC 1 cut(s) 997
NlaIII CATG 8 cut(s) 82, 307, 343, 442, 512, 547, 595, 637
NlaIV GGNNCC 3 cut(s) 249, 657, 855
NmeAIII GCCGAG 1 cut(s) 998
NspI RCATGY 2 cut(s) 82, 637
NspV TTCGAA 1 cut(s) 126
PaeR7I CTCGAG 1 cut(s) 170
PciI ACATGT 2 cut(s) 78, 633
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PctI GAATGC 1 cut(s) 110
PfeI GAWTC 7 cut(s) 18, 159, 184, 382, 398, 409, 623
PflMI CCANNNNNTGG 1 cut(s) 439
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 4 cut(s) 94, 356, 872, 934
PpsI GAGTC 4 cut(s) 94, 356, 872, 934
Ppu21I YACGTR 1 cut(s) 528
PscI ACATGT 2 cut(s) 78, 633
Psp124BI GAGCTC 1 cut(s) 1019
PspFI CCCAGC 1 cut(s) 377
PspN4I GGNNCC 3 cut(s) 249, 657, 855
PspPI GGNCC 1 cut(s) 549
PsrI GAACNNNNNNTAC 2 cut(s) 854, 886
PstI CTGCAG 1 cut(s) 453
PstNI CAGNNNCTG 2 cut(s) 143, 943
RsaI GTAC 6 cut(s) 249, 290, 311, 530, 791, 863
RsaNI GTAC 6 cut(s) 248, 289, 310, 529, 790, 862
SacI GAGCTC 1 cut(s) 1019
SaqAI TTAA 2 cut(s) 978, 1038
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 1 cut(s) 997
Sau96I GGNCC 1 cut(s) 549
ScaI AGTACT 1 cut(s) 311
SchI GAGTC 4 cut(s) 95, 357, 872, 935
ScrFI CCNGG 2 cut(s) 37, 900
SduI GDGCHC 2 cut(s) 923, 1019
SfaNI GCATC 1 cut(s) 412
SfcI CTRYAG 2 cut(s) 449, 793
Sfr274I CTCGAG 1 cut(s) 170
SfuI TTCGAA 1 cut(s) 126
SinI GGWCC 1 cut(s) 549
SlaI CTCGAG 1 cut(s) 170
SmlI CTYRAG 4 cut(s) 101, 117, 170, 977
SmoI CTYRAG 4 cut(s) 101, 117, 170, 977
Sse9I AATT 4 cut(s) 225, 279, 298, 601
SsiI CCGC 5 cut(s) 5, 257, 1007, 1022, 1034
SspMI CTAG 4 cut(s) 74, 566, 993, 1056
SstI GAGCTC 1 cut(s) 1019
StyD4I CCNGG 2 cut(s) 35, 898
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 5 cut(s) 63, 474, 841, 866, 1031
TaiI ACGT 1 cut(s) 530
TaqI TCGA 7 cut(s) 84, 126, 157, 171, 194, 489, 1048
TasI AATT 4 cut(s) 225, 279, 298, 601
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 7 cut(s) 18, 159, 184, 382, 398, 409, 623
Tru1I TTAA 2 cut(s) 978, 1038
Tru9I TTAA 2 cut(s) 978, 1038
TscAI CASTG 1 cut(s) 1075
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 4 cut(s) 320, 536, 608, 767
TspRI CASTG 1 cut(s) 1075
Van91I CCANNNNNTGG 1 cut(s) 439
Vha464I CTTAAG 1 cut(s) 977
VpaK11BI GGWCC 1 cut(s) 549
XceI RCATGY 2 cut(s) 82, 637
XhoI CTCGAG 1 cut(s) 170
XspI CTAG 4 cut(s) 74, 566, 993, 1056
ZrmI AGTACT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.