Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Reverse (-)

52025288 .. 52027292

Gene Structure 2005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0374200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGCCGTGGTGGTGGAAAACTGAACATGCAACTCATTGCCGATGAGAGATCTCGCAGAATTACGTTCCAAAAGAGAAAGAAGGGCATTCTCAAGAAAGCTTATGAGTTTTCAACCCTTTGCGGTGTAGATATGTGCTTGATAATCTACGGCCCAAAACAGTCTGATCGGCGACCTACTGAACTCCACACCTGGCCACAAAACCCAGATGAGGTTAATCGCATTATTGACAAATTTAAGCTCAATAACAAACCAGCCACCAAAACCTACAACTTGTCCGATTGGTTGCATGAGCAAAAGGTCAAGATGGATGCTAAAATCTCCAAACTGAGGAGTGATATGTATGAGGCCAAGTACCCTACATGGGACGACCGCATCAATGATTTTTCAGAACATCAACTGGAAGAGCTTGTACATGTGTTGGATCAAAAGATTGAATCCGGGAAGAGAACACTAAATAATGTGAGGGCACCACCAAAATTGCTGCTAGGTGGAAACCATGTTGCTGATGTAACTAGGCAAAAGCTCTCTAATCACATGCAAGATTATGCGCATTACCTTGGTGAGTATGAGGACCAAAAGCCTAGCTATGTGAGTATGATGGATATGCAAATGCCCTTCTCAATTGATCAGCCTACTAGCTATTCTCAAACGCTTCAATATGATTCAGATTTGAATTCGATGATGACTAATCCGTTGATGGGATATCCGAGCACTTACTATGATCCAAGTGGAGCAAGTCAGATGATCCAGTCTCCTGCCGAGAACAATCCGAATATGATGATGTTCAATAGCGTTCCAAGTTCCTCAGTGAGCCACTATGCCCAACTAATACAGAAGCCTATGTCGTACACGCAATACCCGATGAATATTTCGACTATTTCATCACAACTGGGAACTTCTCAAGTAAAAGATCGTGAAGATGATGATCTGATCCATAACAAGATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

317

Amino Acids

36.57

Weight (kDa)

7.12

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	13 - 54	2.5e-18	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	552
AccB1I	GGYRCC	1 cut(s)	469
AciI	CCGC	2 cut(s)	123, 373
AclWI	GGATC	4 cut(s)	432, 719, 742, 928
AcoI	YGGCCR	1 cut(s)	194
AcsI	RAATTY	2 cut(s)	233, 676
AfaI	GTAC	3 cut(s)	356, 414, 851
AfiI	CCNNNNNNNGG	4 cut(s)	211, 330, 364, 701
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	5 cut(s)	114, 437, 659, 676, 790
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	6 cut(s)	101, 241, 409, 526, 588, 642
AluI	AGCT	6 cut(s)	101, 241, 409, 526, 588, 642
Alw21I	GWGCWC	1 cut(s)	716
Alw26I	GTCTC	1 cut(s)	759
AlwI	GGATC	4 cut(s)	432, 719, 742, 928
AoxI	GGCC	4 cut(s)	4, 151, 194, 348
ApeKI	GCWGC	1 cut(s)	484
ApoI	RAATTY	2 cut(s)	233, 676
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	3 cut(s)	4, 152, 574
AsuC2I	CCSGG	1 cut(s)	442
AsuHPI	GGTGA	1 cut(s)	575
AvaII	GGWCC	1 cut(s)	574
BaeGI	GKGCMC	1 cut(s)	472
BalI	TGGCCA	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	469
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
Bbv12I	GWGCWC	1 cut(s)	716
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	4 cut(s)	301, 595, 694, 940
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	193
BclI	TGATCA	1 cut(s)	628
BcnI	CCSGG	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	759
BfaI	CTAG	4 cut(s)	488, 516, 585, 639
BglII	AGATCT	1 cut(s)	50
BisI	GCNGC	1 cut(s)	485
BlsI	GCNGC	1 cut(s)	486
Bme1390I	CCNGG	2 cut(s)	193, 442
Bme18I	GGWCC	1 cut(s)	574
BmgT120I	GGNCC	3 cut(s)	4, 152, 574
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	2 cut(s)	193, 442
BmrI	ACTGGG	1 cut(s)	902
BmsI	GCATC	2 cut(s)	301, 384
BmuI	ACTGGG	1 cut(s)	902
BpuEI	CTTGAG	2 cut(s)	77, 888
BpuMI	CCSGG	1 cut(s)	442
BsaBI	GATNNNNATC	1 cut(s)	927
BsaJI	CCNNGG	2 cut(s)	7, 559
Bsc4I	CCNNNNNNNGG	4 cut(s)	211, 330, 364, 701
Bse1I	ACTGG	3 cut(s)	405, 751, 897
Bse3DI	GCAATG	1 cut(s)	36
Bse8I	GATNNNNATC	1 cut(s)	927
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	7, 559
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	1 cut(s)	927
BseLI	CCNNNNNNNGG	4 cut(s)	211, 330, 364, 701
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	320, 822
BseNI	ACTGG	3 cut(s)	405, 751, 897
BseRI	GAGGAG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	1 cut(s)	471
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	4 cut(s)	6, 153, 196, 350
BshNI	GGYRCC	1 cut(s)	469
BsiEI	CGRYCG	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	716
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	4 cut(s)	211, 330, 364, 701
BsmAI	GTCTC	1 cut(s)	759
BsmFI	GGGAC	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	4 cut(s)	6, 153, 196, 350
Bsp1286I	GDGCHC	2 cut(s)	472, 716
Bsp1407I	TGTACA	1 cut(s)	412
Bsp143I	GATC	9 cut(s)	50, 166, 424, 628, 724, 747, 913, 928, 933
BspACI	CCGC	2 cut(s)	123, 373
BspANI	GGCC	4 cut(s)	6, 153, 196, 350
BspCNI	CTCAG	2 cut(s)	321, 821
BspLI	GGNNCC	1 cut(s)	471
BspPI	GGATC	4 cut(s)	432, 719, 742, 928
BspQI	GCTCTTC	1 cut(s)	399
BspT107I	GGYRCC	1 cut(s)	469
BsrDI	GCAATG	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	412
BsrI	ACTGG	3 cut(s)	405, 751, 897
BssECI	CCNNGG	2 cut(s)	7, 559
BssMI	GATC	9 cut(s)	50, 166, 424, 628, 724, 747, 913, 928, 933
BssT1I	CCWWGG	1 cut(s)	559
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	2 cut(s)	399, 440
BstAUI	TGTACA	1 cut(s)	412
BstDEI	CTNAG	2 cut(s)	329, 808
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	9 cut(s)	53, 169, 427, 631, 727, 750, 916, 931, 936
BstMAI	GTCTC	1 cut(s)	759
BstMBI	GATC	9 cut(s)	50, 166, 424, 628, 724, 747, 913, 928, 933
BstMCI	CGRYCG	1 cut(s)	373
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	3 cut(s)	31, 419, 541
BstSCI	CCNGG	2 cut(s)	191, 440
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BsuRI	GGCC	4 cut(s)	6, 153, 196, 350
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	816
CfoI	GCGC	1 cut(s)	553
Cfr13I	GGNCC	3 cut(s)	4, 152, 574
Csp6I	GTAC	3 cut(s)	355, 413, 850
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviAII	CATG	6 cut(s)	28, 290, 363, 416, 500, 538
CviQI	GTAC	3 cut(s)	355, 413, 850
DdeI	CTNAG	2 cut(s)	329, 808
DpnI	GATC	9 cut(s)	52, 168, 426, 630, 726, 749, 915, 930, 935
DpnII	GATC	9 cut(s)	50, 166, 424, 628, 724, 747, 913, 928, 933
EaeI	YGGCCR	1 cut(s)	194
Eam1104I	CTCTTC	2 cut(s)	399, 440
EarI	CTCTTC	2 cut(s)	399, 440
Eco130I	CCWWGG	1 cut(s)	559
Eco32I	GATATC	1 cut(s)	707
Eco47I	GGWCC	1 cut(s)	574
EcoRI	GAATTC	1 cut(s)	676
EcoRII	CCWGG	1 cut(s)	191
EcoRV	GATATC	1 cut(s)	707
EcoT14I	CCWWGG	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	559
FaeI	CATG	6 cut(s)	31, 293, 366, 419, 503, 541
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	6 cut(s)	27, 289, 362, 415, 499, 537
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	1 cut(s)	485
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	485
FspAI	RTGCGCAY	1 cut(s)	552
FspBI	CTAG	4 cut(s)	488, 516, 585, 639
FspI	TGCGCA	1 cut(s)	552
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	1 cut(s)	485
HaeIII	GGCC	4 cut(s)	6, 153, 196, 350
HapII	CCGG	1 cut(s)	441
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	6 cut(s)	31, 293, 366, 419, 503, 541
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	2 cut(s)	437, 665
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	1 cut(s)	852
Hpy188I	TCNGA	8 cut(s)	166, 280, 391, 670, 711, 744, 774, 933
Hpy188III	TCNNGA	3 cut(s)	94, 304, 917
Hpy8I	GTNNAC	1 cut(s)	852
HpyAV	CCTTC	2 cut(s)	76, 628
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	4 cut(s)	31, 289, 541, 610
HpyF3I	CTNAG	2 cut(s)	329, 808
HpySE526I	ACGT	1 cut(s)	65
Hsp92II	CATG	6 cut(s)	31, 293, 366, 419, 503, 541
HspAI	GCGC	1 cut(s)	551
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	9 cut(s)	50, 166, 424, 628, 724, 747, 913, 928, 933
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	1 cut(s)	734
LpnPI	CCDG	9 cut(s)	178, 205, 219, 267, 386, 454, 764, 771, 878
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	2 cut(s)	301, 384
MaeI	CTAG	4 cut(s)	488, 516, 585, 639
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	9 cut(s)	52, 168, 426, 630, 726, 749, 915, 930, 935
MboI	GATC	9 cut(s)	50, 166, 424, 628, 724, 747, 913, 928, 933
MboII	GAAGA	3 cut(s)	416, 457, 932
MfeI	CAATTG	1 cut(s)	624
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	2 cut(s)	472, 716
MlsI	TGGCCA	1 cut(s)	196
MluCI	AATT	5 cut(s)	60, 233, 479, 624, 676
MluNI	TGGCCA	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	6 cut(s)	205, 324, 340, 459, 565, 817
Mox20I	TGGCCA	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	196
MseI	TTAA	2 cut(s)	216, 237
Msp20I	TGGCCA	1 cut(s)	196
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	2 cut(s)	193, 442
MunI	CAATTG	1 cut(s)	624
Mva1269I	GAATGC	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	193
NciI	CCSGG	1 cut(s)	442
NdeII	GATC	9 cut(s)	50, 166, 424, 628, 724, 747, 913, 928, 933
NlaIII	CATG	6 cut(s)	31, 293, 366, 419, 503, 541
NlaIV	GGNNCC	1 cut(s)	471
NmeAIII	GCCGAG	1 cut(s)	787
NsbI	TGCGCA	1 cut(s)	552
NspI	RCATGY	3 cut(s)	31, 419, 541
PciI	ACATGT	1 cut(s)	415
PciSI	GCTCTTC	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	860
PctI	GAATGC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	437, 665
PfoI	TCCNGGA	1 cut(s)	440
PkrI	GCNGC	1 cut(s)	486
PscI	ACATGT	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	3 cut(s)	4, 152, 574
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	3 cut(s)	356, 414, 851
RsaNI	GTAC	3 cut(s)	355, 413, 850
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	216, 237
SatI	GCNGC	1 cut(s)	485
Sau3AI	GATC	9 cut(s)	50, 166, 424, 628, 724, 747, 913, 928, 933
Sau96I	GGNCC	3 cut(s)	4, 152, 574
ScrFI	CCNGG	2 cut(s)	193, 442
SduI	GDGCHC	2 cut(s)	472, 716
SfaNI	GCATC	2 cut(s)	301, 384
SinI	GGWCC	1 cut(s)	574
SmlI	CTYRAG	2 cut(s)	92, 903
SmoI	CTYRAG	2 cut(s)	92, 903
Sse9I	AATT	5 cut(s)	60, 233, 479, 624, 676
SsiI	CCGC	2 cut(s)	123, 373
SspI	AATATT	1 cut(s)	871
SspMI	CTAG	4 cut(s)	488, 516, 585, 639
StyD4I	CCNGG	2 cut(s)	191, 440
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	2 cut(s)	680, 875
TasI	AATT	5 cut(s)	60, 233, 479, 624, 676
TatI	WGTACW	1 cut(s)	412
TfiI	GAWTC	2 cut(s)	437, 665
Tru1I	TTAA	2 cut(s)	216, 237
Tru9I	TTAA	2 cut(s)	216, 237
TscAI	CASTG	1 cut(s)	816
TseI	GCWGC	1 cut(s)	484
TspDTI	ATGAA	2 cut(s)	873, 881
TspGWI	ACGGA	1 cut(s)	684
TspRI	CASTG	1 cut(s)	816
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	2 cut(s)	233, 676
XceI	RCATGY	3 cut(s)	31, 419, 541
XspI	CTAG	4 cut(s)	488, 516, 585, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.