Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Reverse (-)

6746428 .. 6747566

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1081400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCATTTGCAGGAACAACTCAGAAGTGCATGGCTTGTGACAAGACAGTGTATCTGGTGGACAAGCTCACAGCTGACAACCGAGTCTACCACAAAGCCTGTTTTCGGTGCCACCACTGCAGGGGAACCCTCAAGCTCAGCAACTACAATTCCTTTGAGGGAGTGCTCTACTGCAGGCCACATTTTGATCAGCTCTTCAAAAGAACCGGCAGTCTTGACAAAAGTTTTGAAGGTAAAATTAAAATCCCGCTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044464 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

86

Amino Acids

9.8

Weight (kDa)

9.28

Isoelectric Point (pI)

25.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 65	2.3e-11	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	108
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	105, 121
AgsI	TTSAA	3 cut(s)	199, 230, 254
AluBI	AGCT	4 cut(s)	67, 74, 136, 193
AluI	AGCT	4 cut(s)	67, 74, 136, 193
Alw21I	GWGCWC	1 cut(s)	168
AoxI	GGCC	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
BanI	GGYRCC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	168
BclI	TGATCA	1 cut(s)	187
BfmI	CTRYAG	2 cut(s)	118, 172
BlpI	GCTNAGC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	110, 127
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 121
Bse118I	RCCGGY	1 cut(s)	206
BseLI	CCNNNNNNNGG	2 cut(s)	105, 121
BseMII	CTCAG	2 cut(s)	35, 151
BshFI	GGCC	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	2 cut(s)	105, 121
BsnI	GGCC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	187
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	2 cut(s)	34, 150
BspLI	GGNNCC	2 cut(s)	110, 127
BspMAI	CTGCAG	2 cut(s)	122, 176
BspQI	GCTCTTC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	206
BssMI	GATC	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	2 cut(s)	21, 137
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstSFI	CTRYAG	2 cut(s)	118, 172
BsuRI	GGCC	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	54, 115
Cac8I	GCNNGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	206
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	7 cut(s)	35, 67, 74, 98, 136, 178, 193
CviKI_1	RGCY	7 cut(s)	35, 67, 74, 98, 136, 178, 193
DdeI	CTNAG	2 cut(s)	21, 137
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
FaeI	CATG	1 cut(s)	34
FaiI	YATR	1 cut(s)	32
FatI	CATG	1 cut(s)	30
FauI	CCCGC	1 cut(s)	255
FbaI	TGATCA	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	207
Hpy166II	GTNNAC	2 cut(s)	61, 88
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	61, 88
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	4 cut(s)	11, 30, 120, 174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	2 cut(s)	21, 137
Hsp92II	CATG	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	200
LpnPI	CCDG	5 cut(s)	41, 106, 112, 160, 220
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	2 cut(s)	148, 237
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	2 cut(s)	140, 151
MseI	TTAA	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	117
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	110, 127
NmuCI	GTSAC	1 cut(s)	38
PciSI	GCTCTTC	1 cut(s)	200
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	110, 127
PstI	CTGCAG	2 cut(s)	122, 176
PvuII	CAGCTG	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	5 cut(s)	69, 76, 138, 195, 235
SfcI	CTRYAG	2 cut(s)	118, 172
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	148, 237
SsiI	CCGC	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	49
TasI	AATT	2 cut(s)	148, 237
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	54, 122
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspRI	CASTG	2 cut(s)	54, 122
XmiI	GTMKAC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.