Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000829.1

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Forward (+)

181380 .. 183451

Gene Structure 2072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000829.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgaatgaatttgctgcatttggtgtcttccgtgattgtctctcacccactgctttaatctcctctcctgtagttttcaataaagagctttttgaagggttggtggttgtgaggttggattggaagctgtccatggccaccttcgcaggaacctcccagaagtgcacagcctgcgaaaagacggtgtatctggttgacaagttaacagctgattccagatcctaccacaaagcctgcttccgatgccaccactgcagaggtaccctaaagctcagcaacttctgctcatttgagggagtcctatactgcaggcctcactatgatcaactcttcaagcgaactggtagtctggataagagttttgaaggtggaacctccaatttcattctcaacacaccaaatccaagcttaagaaacccaggattcatgaaagatccggtggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

148

Amino Acids

16.65

Weight (kDa)

8.64

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	260
AclWI	GGATC	2 cut(s)	213, 428
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	8
AfaI	GTAC	1 cut(s)	262
AflII	CTTAAG	1 cut(s)	409
AgsI	TTSAA	4 cut(s)	79, 95, 334, 365
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	5 cut(s)	88, 127, 209, 271, 408
AluI	AGCT	5 cut(s)	88, 127, 209, 271, 408
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	44
Alw44I	GTGCAC	1 cut(s)	163
AlwI	GGATC	2 cut(s)	213, 428
AoxI	GGCC	2 cut(s)	135, 311
ApaLI	GTGCAC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
Asp718I	GGTACC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	167
BalI	TGGCCA	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	420
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	44
BfmI	CTRYAG	3 cut(s)	69, 253, 307
BfrI	CTTAAG	1 cut(s)	409
BisI	GCNGC	1 cut(s)	15
BlpI	GCTNAGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	420
BmiI	GGNNCC	3 cut(s)	151, 262, 373
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	19
Bpu1102I	GCTNAGC	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	132, 418
BsaWI	WCCGGW	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	132, 418
BseMII	CTCAG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	52
BseSI	GKGCMC	1 cut(s)	167
BshFI	GGCC	2 cut(s)	137, 313
BshNI	GGYRCC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	437
BsmAI	GTCTC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	137, 313
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	3 cut(s)	218, 322, 433
Bsp1720I	GCTNAGC	1 cut(s)	272
Bsp19I	CCATGG	1 cut(s)	132
BspANI	GGCC	2 cut(s)	137, 313
BspCNI	CTCAG	1 cut(s)	285
BspHI	TCATGA	1 cut(s)	426
BspLI	GGNNCC	3 cut(s)	151, 262, 373
BspMAI	CTGCAG	2 cut(s)	257, 311
BspPI	GGATC	2 cut(s)	213, 428
BspT107I	GGYRCC	1 cut(s)	260
BspTI	CTTAAG	1 cut(s)	409
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	2 cut(s)	132, 418
BssMI	GATC	3 cut(s)	218, 322, 433
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	335
BstAFI	CTTAAG	1 cut(s)	409
BstAPI	GCANNNNNTGC	2 cut(s)	171, 282
BstC8I	GCNNGC	3 cut(s)	172, 235, 311
BstDEI	CTNAG	1 cut(s)	272
BstDSI	CCRYGG	1 cut(s)	132
BstKTI	GATC	3 cut(s)	221, 325, 436
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	3 cut(s)	218, 322, 433
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 171, 243, 252, 282
BstNI	CCWGG	1 cut(s)	420
BstSCI	CCNGG	1 cut(s)	418
BstSFI	CTRYAG	3 cut(s)	69, 253, 307
BstSLI	GKGCMC	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	19
BstX2I	RGATCY	2 cut(s)	218, 433
BstYI	RGATCY	2 cut(s)	218, 433
BsuRI	GGCC	2 cut(s)	137, 313
BtgI	CCRYGG	1 cut(s)	132
BtsI	GCAGTG	2 cut(s)	48, 250
BtsIMutI	CAGTG	2 cut(s)	48, 250
Cac8I	GCNNGC	3 cut(s)	172, 235, 311
CciI	TCATGA	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	2 cut(s)	133, 427
CviJI	RGCY	9 cut(s)	88, 127, 137, 170, 209, 233, 271, 313, 408
CviKI_1	RGCY	9 cut(s)	88, 127, 137, 170, 209, 233, 271, 313, 408
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	3 cut(s)	220, 324, 435
DpnII	GATC	3 cut(s)	218, 322, 433
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	132
Eco147I	AGGCCT	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	2 cut(s)	136, 430
FaiI	YATR	4 cut(s)	134, 304, 321, 428
FatI	CATG	2 cut(s)	132, 426
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	137, 313
HapII	CCGG	1 cut(s)	437
Hin1II	CATG	2 cut(s)	136, 430
HincII	GTYRAC	2 cut(s)	196, 204
HindII	GTYRAC	2 cut(s)	196, 204
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	3 cut(s)	212, 297, 423
HpaI	GTTAAC	1 cut(s)	204
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	3 cut(s)	165, 196, 204
Hpy188I	TCNGA	1 cut(s)	242
Hpy188III	TCNNGA	3 cut(s)	216, 350, 427
Hpy8I	GTNNAC	3 cut(s)	165, 196, 204
HpyAV	CCTTC	3 cut(s)	89, 151, 359
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	4 cut(s)	17, 165, 255, 309
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 171, 243, 252, 282
HpyF3I	CTNAG	1 cut(s)	272
Hsp92II	CATG	2 cut(s)	136, 430
KpnI	GGTACC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	322
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	3 cut(s)	218, 322, 433
LweI	GCATC	1 cut(s)	233
MalI	GATC	3 cut(s)	220, 324, 435
MboI	GATC	3 cut(s)	218, 322, 433
MboII	GAAGA	2 cut(s)	19, 322
MflI	RGATCY	2 cut(s)	218, 433
MhlI	GDGCHC	1 cut(s)	167
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	2 cut(s)	8, 379
MluNI	TGGCCA	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	7 cut(s)	73, 105, 163, 251, 286, 324, 385
Mox20I	TGGCCA	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	3 cut(s)	56, 203, 410
Msp20I	TGGCCA	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	209
MspCI	CTTAAG	1 cut(s)	409
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	5 cut(s)	143, 171, 243, 252, 282
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	218, 322, 433
NlaIII	CATG	2 cut(s)	136, 430
NlaIV	GGNNCC	3 cut(s)	151, 262, 373
PagI	TCATGA	1 cut(s)	426
PceI	AGGCCT	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	212, 423
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	3 cut(s)	151, 262, 373
PstI	CTGCAG	2 cut(s)	257, 311
PsuI	RGATCY	2 cut(s)	218, 433
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	56, 203, 410
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	218, 322, 433
SchI	GAGTC	1 cut(s)	306
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	1 cut(s)	167
SfaNI	GCATC	1 cut(s)	233
SfcI	CTRYAG	3 cut(s)	69, 253, 307
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
Sse9I	AATT	2 cut(s)	8, 379
SseBI	AGGCCT	1 cut(s)	313
StuI	AGGCCT	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	418
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	184
TasI	AATT	2 cut(s)	8, 379
TfiI	GAWTC	2 cut(s)	212, 423
Tru1I	TTAA	3 cut(s)	56, 203, 410
Tru9I	TTAA	3 cut(s)	56, 203, 410
TscAI	CASTG	2 cut(s)	55, 257
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	5 cut(s)	17, 21, 373, 415, 443
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	2 cut(s)	55, 257
Vha464I	CTTAAG	1 cut(s)	409
VneI	GTGCAC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.