Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Reverse (-)

8040391 .. 8042108

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG048600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAATGAATTTGCTGCATTTGGTGTCTTCCGTGATTGTCTCTCACCCACTGCTTTAATCTCCTCTCCTGTAGTTTTCAATAAAGAGCTTTTTGAAGGGTTGGTGGTTGTGAGGTTGGATTGGAAGCTGTCCATGGCCACCTTCGCAGGAACCTCCCAGAAGTGCACAGCCTGCGAAAAGACCGTGTATCTGGTTGACAAGTTAACAGCTGATTCCAGATCCTACCACAAAGCCTGCTTCCGATGCCACCACTGCAGAGGTACCCTAAAGCTCAGCAACTTCTGCTCATTTGAGGGAGTCCTATACTGCAGGCCTCACTATGATCAACTCTTCAAGCGAACTGGTAGTCTGGATAAGAGTTTTGAAGGCACACCGAAAATTTTGAAACCAGAAAGACCTACGATTGAGAATGAGAATAACAAGGCAGTATCAAACATGTTTGTTGGTACCAAAGATAAATGTGTGGGATGTGAAAAGACAGTGTATCCCATTGAGAAGGTCTCGGTGAATGGGACTTCATACCACAGGAGGTGCTTCAAATGTACCCATGGAGGTTGCACCATAAGCCCATCTAACTATATTGCACATGAGGGAAAGCTCTACTGCAAACACCACCACATCCAACTCTTCAAGGAGAAAGGGAATTACAGCCAGCTTGAGAATGAACGTGAAAAGCAATCGGAAACTGGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

231

Amino Acids

26.19

Weight (kDa)

8.86

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	55 - 110	2e-09	LIM domain
LIM	PF00412	154 - 210	1.1e-11	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	260, 446
AccB1I	GGYRCC	2 cut(s)	260, 446
AclWI	GGATC	1 cut(s)	213
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	2 cut(s)	8, 378
AfaI	GTAC	3 cut(s)	262, 448, 544
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	7 cut(s)	79, 95, 334, 365, 385, 538, 631
AluBI	AGCT	6 cut(s)	88, 127, 209, 271, 598, 655
AluI	AGCT	6 cut(s)	88, 127, 209, 271, 598, 655
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	44, 505
Alw44I	GTGCAC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	2 cut(s)	135, 311
ApaLI	GTGCAC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	2 cut(s)	8, 378
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
Asp718I	GGTACC	2 cut(s)	260, 446
AsuHPI	GGTGA	2 cut(s)	36, 517
BaeGI	GKGCMC	1 cut(s)	167
BalI	TGGCCA	1 cut(s)	137
BanI	GGYRCC	2 cut(s)	260, 446
BbsI	GAAGAC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	167
BccI	CCATC	1 cut(s)	577
BciVI	GTATCC	1 cut(s)	495
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	44, 505
BfmI	CTRYAG	3 cut(s)	69, 253, 307
BfuI	GTATCC	1 cut(s)	495
BisI	GCNGC	1 cut(s)	15
BlpI	GCTNAGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	16
BmiI	GGNNCC	3 cut(s)	151, 262, 448
BmsI	GCATC	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
Bpu1102I	GCTNAGC	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	677
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	132, 547
Bse1I	ACTGG	2 cut(s)	346, 691
BseDI	CCNNGG	2 cut(s)	132, 547
BseGI	GGATG	2 cut(s)	473, 618
BseMII	CTCAG	1 cut(s)	286
BseNI	ACTGG	2 cut(s)	346, 691
BseRI	GAGGAG	1 cut(s)	52
BseSI	GKGCMC	1 cut(s)	167
BshFI	GGCC	2 cut(s)	137, 313
BshNI	GGYRCC	2 cut(s)	260, 446
BsiHKAI	GWGCWC	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	526
BsmAI	GTCTC	2 cut(s)	44, 505
BsmFI	GGGAC	1 cut(s)	526
BsnI	GGCC	2 cut(s)	137, 313
Bso31I	GGTCTC	1 cut(s)	505
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	218, 322
Bsp1720I	GCTNAGC	1 cut(s)	272
Bsp19I	CCATGG	2 cut(s)	132, 547
BspANI	GGCC	2 cut(s)	137, 313
BspCNI	CTCAG	1 cut(s)	285
BspLI	GGNNCC	3 cut(s)	151, 262, 448
BspMAI	CTGCAG	2 cut(s)	257, 311
BspPI	GGATC	1 cut(s)	213
BspT107I	GGYRCC	2 cut(s)	260, 446
BspTNI	GGTCTC	1 cut(s)	505
BsrI	ACTGG	2 cut(s)	346, 691
BssECI	CCNNGG	2 cut(s)	132, 547
BssMI	GATC	2 cut(s)	218, 322
BssT1I	CCWWGG	2 cut(s)	132, 547
Bst4CI	ACNGT	2 cut(s)	184, 481
Bst6I	CTCTTC	2 cut(s)	335, 632
BstAPI	GCANNNNNTGC	2 cut(s)	171, 282
BstC8I	GCNNGC	4 cut(s)	172, 235, 311, 653
BstDEI	CTNAG	1 cut(s)	272
BstDSI	CCRYGG	2 cut(s)	132, 547
BstF5I	GGATG	2 cut(s)	473, 618
BstKTI	GATC	2 cut(s)	221, 325
BstMAI	GTCTC	2 cut(s)	44, 505
BstMBI	GATC	2 cut(s)	218, 322
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 171, 243, 252, 282, 564
BstNSI	RCATGY	1 cut(s)	439
BstSFI	CTRYAG	3 cut(s)	69, 253, 307
BstSLI	GKGCMC	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuI	GTATCC	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	137, 313
BtgI	CCRYGG	2 cut(s)	132, 547
BtsCI	GGATG	2 cut(s)	473, 618
BtsI	GCAGTG	2 cut(s)	48, 250
BtsIMutI	CAGTG	3 cut(s)	48, 250, 486
Cac8I	GCNNGC	4 cut(s)	172, 235, 311, 653
Csp6I	GTAC	3 cut(s)	261, 447, 543
CviAII	CATG	4 cut(s)	133, 436, 548, 587
CviQI	GTAC	3 cut(s)	261, 447, 543
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	2 cut(s)	220, 324
DpnII	GATC	2 cut(s)	218, 322
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	2 cut(s)	335, 632
EarI	CTCTTC	2 cut(s)	335, 632
Eco130I	CCWWGG	2 cut(s)	132, 547
Eco147I	AGGCCT	1 cut(s)	313
Eco31I	GGTCTC	1 cut(s)	505
EcoT14I	CCWWGG	2 cut(s)	132, 547
ErhI	CCWWGG	2 cut(s)	132, 547
FaeI	CATG	4 cut(s)	136, 439, 551, 590
FaiI	YATR	9 cut(s)	134, 304, 321, 437, 520, 549, 563, 579, 588
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	4 cut(s)	132, 435, 547, 586
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	2 cut(s)	480, 605
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	137, 313
Hin1II	CATG	4 cut(s)	136, 439, 551, 590
HincII	GTYRAC	2 cut(s)	196, 204
HindII	GTYRAC	2 cut(s)	196, 204
HinfI	GANTC	2 cut(s)	212, 297
HpaI	GTTAAC	1 cut(s)	204
HphI	GGTGA	2 cut(s)	36, 517
Hpy166II	GTNNAC	3 cut(s)	165, 196, 204
Hpy188I	TCNGA	2 cut(s)	242, 682
Hpy188III	TCNNGA	2 cut(s)	216, 350
Hpy8I	GTNNAC	3 cut(s)	165, 196, 204
HpyAV	CCTTC	4 cut(s)	89, 151, 359, 490
HpyCH4III	ACNGT	2 cut(s)	184, 481
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	7 cut(s)	17, 165, 255, 309, 558, 584, 606
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 171, 243, 252, 282, 564
HpyF3I	CTNAG	1 cut(s)	272
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	4 cut(s)	136, 439, 551, 590
KpnI	GGTACC	2 cut(s)	264, 450
Ksp22I	TGATCA	1 cut(s)	322
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	218, 322
LweI	GCATC	1 cut(s)	233
MaeII	ACGT	1 cut(s)	667
MalI	GATC	2 cut(s)	220, 324
MboI	GATC	2 cut(s)	218, 322
MboII	GAAGA	3 cut(s)	19, 322, 619
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	167
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	3 cut(s)	8, 378, 643
MluNI	TGGCCA	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	2 cut(s)	96, 646
MnlI	CCTC	9 cut(s)	73, 105, 163, 251, 286, 324, 522, 545, 583
Mox20I	TGGCCA	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	2 cut(s)	56, 203
Msp20I	TGGCCA	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	209
MwoI	GCNNNNNNNGC	6 cut(s)	143, 171, 243, 252, 282, 564
NcoI	CCATGG	2 cut(s)	132, 547
NdeII	GATC	2 cut(s)	218, 322
NlaIII	CATG	4 cut(s)	136, 439, 551, 590
NlaIV	GGNNCC	3 cut(s)	151, 262, 448
NspI	RCATGY	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	313
PciI	ACATGT	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
PscI	ACATGT	1 cut(s)	435
PspN4I	GGNNCC	3 cut(s)	151, 262, 448
PstI	CTGCAG	2 cut(s)	257, 311
PsuI	RGATCY	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	3 cut(s)	262, 448, 544
RsaNI	GTAC	3 cut(s)	261, 447, 543
SaqAI	TTAA	2 cut(s)	56, 203
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	218, 322
SchI	GAGTC	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	167
SfaNI	GCATC	1 cut(s)	233
SfcI	CTRYAG	3 cut(s)	69, 253, 307
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
Sse9I	AATT	3 cut(s)	8, 378, 643
SseBI	AGGCCT	1 cut(s)	313
StuI	AGGCCT	1 cut(s)	313
StyI	CCWWGG	2 cut(s)	132, 547
TaaI	ACNGT	2 cut(s)	184, 481
TaiI	ACGT	1 cut(s)	670
TasI	AATT	3 cut(s)	8, 378, 643
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	2 cut(s)	56, 203
Tru9I	TTAA	2 cut(s)	56, 203
TscAI	CASTG	3 cut(s)	55, 257, 486
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	4 cut(s)	17, 21, 507, 678
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	3 cut(s)	55, 257, 486
VneI	GTGCAC	1 cut(s)	163
XapI	RAATTY	2 cut(s)	8, 378
XceI	RCATGY	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.