Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Forward (+)

16162656 .. 16164806

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G146000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTACCTTTGCAGGCACCACACAAAAGTGCACGGCTTGCGAAAAGACGGTGTACTTGGTCGATAGGTTGGCCGCCGATTCCAGAGTTTACCACAAGGCTTGCTTCCGATGCCACCACTGCACGGGTACCCTCAAGCTGAGCAACTACTGTTCATTTGAGGGGGTCCTATACTGCAGGCCTCACTATGATCAACTCTTCAAGCGAACTGGCAGCCTGGACAAGAGTTTTGAAGGGACACCGAAAATCTTGAAGCCGGAGAAATCTTCTACTGATAAAGAGAATGGCAACTCAGTCTCAAACTTGTTTGCTGGTACCAGAGAAAAATGTGTGGGCTGTCAGAAGACCGTTTATCCAATTGAGAAGGTTTCGGTCAATGGGACCCCATACCACAGGAGCTGCTTCAAATGCACACATGGAGGTTGCACCATAAGCCCATCTAATTATATTGCACATGAAGGCAAGCTTTACTGCAAACACCACCACATCCAACTCTTTAAGGAAAAAGGAAATTACAGCCAGCTTGAGAATGAAGGCGAAAAGCATTCCATGACTATGGAGATTGCTGCTGAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

193

Amino Acids

21.57

Weight (kDa)

8.73

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	128, 314
AccB1I	GGYRCC	3 cut(s)	17, 128, 314
AciI	CCGC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	72
AfaI	GTAC	3 cut(s)	56, 130, 316
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	4 cut(s)	202, 233, 253, 406
AjnI	CCWGG	1 cut(s)	216
AleI	CACNNNNGTG	1 cut(s)	28
AluBI	AGCT	4 cut(s)	139, 399, 466, 523
AluI	AGCT	4 cut(s)	139, 399, 466, 523
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	301
Alw44I	GTGCAC	1 cut(s)	31
AlwNI	CAGNNNCTG	1 cut(s)	399
AoxI	GGCC	2 cut(s)	72, 179
ApaLI	GTGCAC	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	213, 399, 566
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
Asp718I	GGTACC	2 cut(s)	128, 314
AspS9I	GGNCC	2 cut(s)	166, 381
AvaII	GGWCC	2 cut(s)	166, 381
BaeGI	GKGCMC	1 cut(s)	35
BanI	GGYRCC	3 cut(s)	17, 128, 314
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	3 cut(s)	225, 386, 553
BccI	CCATC	1 cut(s)	445
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	218
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	301
BfmI	CTRYAG	1 cut(s)	175
BisI	GCNGC	4 cut(s)	75, 214, 400, 567
BlpI	GCTNAGC	1 cut(s)	140
BlsI	GCNGC	4 cut(s)	76, 215, 401, 568
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	2 cut(s)	166, 381
BmgT120I	GGNCC	2 cut(s)	166, 381
BmiI	GGNNCC	6 cut(s)	19, 130, 167, 316, 382, 383
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	350
Bpu1102I	GCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	2 cut(s)	119, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	218
BseGI	GGATG	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	2 cut(s)	131, 306
BseNI	ACTGG	1 cut(s)	214
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	3 cut(s)	225, 386, 553
BsgI	GTGCAG	1 cut(s)	106
BshFI	GGCC	2 cut(s)	74, 181
BshNI	GGYRCC	3 cut(s)	17, 128, 314
BsiHKAI	GWGCWC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	2 cut(s)	250, 394
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	250, 394
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	2 cut(s)	74, 181
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	190
Bsp1720I	GCTNAGC	1 cut(s)	140
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	2 cut(s)	74, 181
BspCNI	CTCAG	2 cut(s)	132, 305
BspLI	GGNNCC	6 cut(s)	19, 130, 167, 316, 382, 383
BspMAI	CTGCAG	1 cut(s)	179
BspT107I	GGYRCC	3 cut(s)	17, 128, 314
BsrI	ACTGG	1 cut(s)	214
BssMI	GATC	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	3 cut(s)	52, 152, 349
Bst6I	CTCTTC	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstC8I	GCNNGC	6 cut(s)	16, 40, 103, 179, 464, 521
BstDEI	CTNAG	2 cut(s)	140, 292
BstF5I	GGATG	1 cut(s)	486
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 39, 111, 120, 408, 432
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	225, 386, 553
BstV2I	GAAGAC	1 cut(s)	350
BstXI	CCANNNNNNTGG	1 cut(s)	556
BsuRI	GGCC	2 cut(s)	74, 181
BtsCI	GGATG	1 cut(s)	486
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	6 cut(s)	16, 40, 103, 179, 464, 521
CaiI	CAGNNNCTG	1 cut(s)	399
Cfr13I	GGNCC	2 cut(s)	166, 381
Csp6I	GTAC	3 cut(s)	55, 129, 315
CspCI	CAANNNNNGTGG	2 cut(s)	83, 118
CviAII	CATG	3 cut(s)	416, 455, 550
CviQI	GTAC	3 cut(s)	55, 129, 315
DdeI	CTNAG	2 cut(s)	140, 292
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco147I	AGGCCT	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	166, 381
EcoO109I	RGGNCCY	2 cut(s)	166, 381
EcoRII	CCWGG	1 cut(s)	216
FaeI	CATG	3 cut(s)	419, 458, 553
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 450, 482
FaqI	GGGAC	2 cut(s)	250, 394
FatI	CATG	3 cut(s)	415, 454, 549
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	4 cut(s)	75, 214, 400, 567
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	4 cut(s)	75, 214, 400, 567
GluI	GCNGC	4 cut(s)	75, 214, 400, 567
HaeIII	GGCC	2 cut(s)	74, 181
HapII	CCGG	1 cut(s)	257
Hin1II	CATG	3 cut(s)	419, 458, 553
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	2 cut(s)	80, 572
HpaII	CCGG	1 cut(s)	257
Hpy166II	GTNNAC	3 cut(s)	33, 55, 91
Hpy188I	TCNGA	2 cut(s)	110, 342
Hpy188III	TCNNGA	2 cut(s)	84, 250
Hpy8I	GTNNAC	3 cut(s)	33, 55, 91
HpyAV	CCTTC	4 cut(s)	227, 358, 452, 527
HpyCH4III	ACNGT	3 cut(s)	52, 152, 349
HpyCH4V	TGCA	8 cut(s)	14, 33, 123, 177, 411, 426, 452, 474
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 39, 111, 120, 408, 432
HpyF3I	CTNAG	2 cut(s)	140, 292
Hsp92II	CATG	3 cut(s)	419, 458, 553
KflI	GGGWCCC	1 cut(s)	381
KpnI	GGTACC	2 cut(s)	132, 318
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	396
Lsp1109I	GCAGC	3 cut(s)	225, 386, 553
LweI	GCATC	1 cut(s)	101
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	3 cut(s)	190, 258, 355
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	3 cut(s)	357, 442, 511
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	4 cut(s)	143, 154, 192, 413
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	2 cut(s)	28, 554
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	6 cut(s)	11, 39, 111, 120, 408, 432
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	3 cut(s)	419, 458, 553
NlaIV	GGNNCC	6 cut(s)	19, 130, 167, 316, 382, 383
OliI	CACNNNNGTG	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	181
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	2 cut(s)	80, 572
PkrI	GCNGC	4 cut(s)	76, 215, 401, 568
PpuMI	RGGWCCY	2 cut(s)	166, 381
Psp5II	RGGWCCY	2 cut(s)	166, 381
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	6 cut(s)	19, 130, 167, 316, 382, 383
PspPI	GGNCC	2 cut(s)	166, 381
PspPPI	RGGWCCY	2 cut(s)	166, 381
PstI	CTGCAG	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	399
RsaI	GTAC	3 cut(s)	56, 130, 316
RsaNI	GTAC	3 cut(s)	55, 129, 315
RseI	CAYNNNNRTG	2 cut(s)	28, 554
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	4 cut(s)	75, 214, 400, 567
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	2 cut(s)	166, 381
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	8 cut(s)	11, 71, 141, 369, 401, 424, 468, 525
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	1 cut(s)	175
SinI	GGWCC	2 cut(s)	166, 381
SmiMI	CAYNNNNRTG	2 cut(s)	28, 554
SmlI	CTYRAG	2 cut(s)	134, 524
SmoI	CTYRAG	2 cut(s)	134, 524
Sse9I	AATT	3 cut(s)	357, 442, 511
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	1 cut(s)	75
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	52, 152, 349
TaqI	TCGA	1 cut(s)	63
TaqII	GACCGA	1 cut(s)	361
TasI	AATT	3 cut(s)	357, 442, 511
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	80, 572
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	1 cut(s)	125
TseI	GCWGC	3 cut(s)	213, 399, 566
TspDTI	ATGAA	3 cut(s)	144, 471, 546
TspRI	CASTG	1 cut(s)	125
VneI	GTGCAC	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	166, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.