Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Reverse (-)

2512058 .. 2513662

Gene Structure 1605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010540

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCATTTGCAGGAACAACCCAGAAATGCATGGCTTGTGACAAAACTGTGTATCTGGTTGATAAGCTCACAGCTGATAACAGAATCTATCACAAAGCCTGCTTTAGATGCCACCACTGCAAAGGAACCCTCAAGCTCAGCAACTACAATTCATTTGAGGGAGTACTTTACTGCAGGCCACACTTTGATCAACTCTTCAAAAGAACTGGCAGTCTTGACAAAAGCTTTGAAGGCACACCAAAAATTGTAAAACCTGAGAGACCTGTTGATAATGAGAAAGCTGCAGTGACTAAAGCTTCAAGCATGTTTGGTGGAACCAGAGATAAATGCTTTGGCTGCAAGAAAACTGTTTATCCAACAGAAAAGGTTTCGGTGAATGGGACTCCCTACCACAAGATGTGCTTCAAATGTACACATGGAGGGTGTACAATCAGCCCATCGAACTACATTGCGCATGAGGGCCGACTCTACTGCAAGCACCACCACACCCAACTCATCAAGGAGAAAGGAAACTTGAGCCAACTCGAGGGTGGTGGTGACCATGATGAGAAAGTAGTCGGTGCCACAGAAATTGCTGCTGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044464 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

196

Amino Acids

21.72

Weight (kDa)

8.94

Isoelectric Point (pI)

28.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 65	5.5e-10	LIM domain
LIM	PF00412	110 - 164	2.3e-11	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	453
AccB1I	GGYRCC	1 cut(s)	560
AfaI	GTAC	3 cut(s)	165, 412, 427
AfiI	CCNNNNNNNGG	1 cut(s)	526
AgsI	TTSAA	4 cut(s)	199, 230, 300, 406
AluBI	AGCT	6 cut(s)	67, 74, 136, 225, 281, 296
AluI	AGCT	6 cut(s)	67, 74, 136, 225, 281, 296
Alw26I	GTCTC	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	2 cut(s)	176, 460
ApeKI	GCWGC	3 cut(s)	281, 336, 575
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	2 cut(s)	385, 548
AvaI	CYCGRG	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	560
BbvI	GCAGC	3 cut(s)	268, 323, 562
BccI	CCATC	1 cut(s)	445
BcgI	CGANNNNNNTGC	2 cut(s)	453, 487
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	253
BfmI	CTRYAG	2 cut(s)	172, 282
BisI	GCNGC	3 cut(s)	282, 337, 576
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	3 cut(s)	283, 338, 577
BmcAI	AGTACT	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	3 cut(s)	127, 316, 562
BmsI	GCATC	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	2 cut(s)	116, 535
BsaI	GGTCTC	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	2 cut(s)	151, 246
BseNI	ACTGG	1 cut(s)	211
BseXI	GCAGC	3 cut(s)	268, 323, 562
BshFI	GGCC	2 cut(s)	178, 462
BshNI	GGYRCC	1 cut(s)	560
BsiHKCI	CYCGRG	1 cut(s)	524
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	178, 462
Bso31I	GGTCTC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	524
Bsp1407I	TGTACA	2 cut(s)	410, 425
Bsp143I	GATC	1 cut(s)	187
Bsp1720I	GCTNAGC	1 cut(s)	137
BspANI	GGCC	2 cut(s)	178, 462
BspCNI	CTCAG	2 cut(s)	150, 247
BspLI	GGNNCC	3 cut(s)	127, 316, 562
BspMAI	CTGCAG	2 cut(s)	176, 286
BspT107I	GGYRCC	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	447
BsrGI	TGTACA	2 cut(s)	410, 425
BsrI	ACTGG	1 cut(s)	211
BssMI	GATC	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	49, 349
Bst6I	CTCTTC	1 cut(s)	200
BstAUI	TGTACA	2 cut(s)	410, 425
BstC8I	GCNNGC	3 cut(s)	100, 176, 476
BstDEI	CTNAG	2 cut(s)	137, 255
BstEII	GGTNACC	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 117, 231, 336
BstNSI	RCATGY	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	536
BstSFI	CTRYAG	2 cut(s)	172, 282
BstV1I	GCAGC	3 cut(s)	268, 323, 562
BsuRI	GGCC	2 cut(s)	178, 462
BtsI	GCAGTG	2 cut(s)	115, 291
BtsIMutI	CAGTG	2 cut(s)	115, 291
Cac8I	GCNNGC	3 cut(s)	100, 176, 476
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	460
Csp6I	GTAC	3 cut(s)	164, 411, 426
CspCI	CAANNNNNGTGG	2 cut(s)	553, 588
CviAII	CATG	5 cut(s)	31, 304, 416, 455, 542
CviQI	GTAC	3 cut(s)	164, 411, 426
DdeI	CTNAG	2 cut(s)	137, 255
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	524
Eco91I	GGTNACC	1 cut(s)	536
EcoO65I	GGTNACC	1 cut(s)	536
EcoT22I	ATGCAT	1 cut(s)	32
FaeI	CATG	5 cut(s)	34, 307, 419, 458, 545
FaiI	YATR	6 cut(s)	32, 305, 417, 456, 543, 586
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	5 cut(s)	30, 303, 415, 454, 541
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	3 cut(s)	282, 337, 576
Fsp4HI	GCNGC	3 cut(s)	282, 337, 576
FspI	TGCGCA	1 cut(s)	453
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	3 cut(s)	282, 337, 576
HaeIII	GGCC	2 cut(s)	178, 462
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	5 cut(s)	34, 307, 419, 458, 545
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HindIII	AAGCTT	2 cut(s)	223, 294
HinfI	GANTC	3 cut(s)	84, 382, 465
HphI	GGTGA	2 cut(s)	385, 548
Hpy166II	GTNNAC	2 cut(s)	413, 426
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	413, 426
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	2 cut(s)	49, 349
HpyCH4V	TGCA	7 cut(s)	11, 30, 120, 174, 284, 339, 474
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 117, 231, 336
HpyF3I	CTNAG	2 cut(s)	137, 255
Hsp92II	CATG	5 cut(s)	34, 307, 419, 458, 545
HspAI	GCGC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	8 cut(s)	35, 41, 112, 160, 192, 267, 276, 331
Lsp1109I	GCAGC	3 cut(s)	268, 323, 562
LweI	GCATC	1 cut(s)	98
MaeIII	GTNAC	3 cut(s)	38, 286, 536
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	1 cut(s)	187
MluCI	AATT	3 cut(s)	148, 243, 570
MlyI	GAGTC	2 cut(s)	376, 459
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	5 cut(s)	140, 151, 413, 451, 520
Mph1103I	ATGCAT	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	74
MwoI	GCNNNNNNNGC	4 cut(s)	108, 117, 231, 336
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	5 cut(s)	34, 307, 419, 458, 545
NlaIV	GGNNCC	3 cut(s)	127, 316, 562
NmuCI	GTSAC	3 cut(s)	38, 286, 536
NsbI	TGCGCA	1 cut(s)	453
NsiI	ATGCAT	1 cut(s)	32
NspI	RCATGY	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	524
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	283, 338, 577
PleI	GAGTC	2 cut(s)	376, 459
PpsI	GAGTC	2 cut(s)	376, 459
PspEI	GGTNACC	1 cut(s)	536
PspN4I	GGNNCC	3 cut(s)	127, 316, 562
PspPI	GGNCC	1 cut(s)	460
PspXI	VCTCGAGB	1 cut(s)	524
PstI	CTGCAG	2 cut(s)	176, 286
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	3 cut(s)	165, 412, 427
RsaNI	GTAC	3 cut(s)	164, 411, 426
SatI	GCNGC	3 cut(s)	282, 337, 576
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	460
ScaI	AGTACT	1 cut(s)	165
SchI	GAGTC	2 cut(s)	376, 459
SetI	ASST	9 cut(s)	69, 76, 138, 227, 256, 265, 283, 298, 369
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	2 cut(s)	172, 282
Sfr274I	CTCGAG	1 cut(s)	524
SlaI	CTCGAG	1 cut(s)	524
SmlI	CTYRAG	3 cut(s)	131, 514, 524
SmoI	CTYRAG	3 cut(s)	131, 514, 524
Sse9I	AATT	3 cut(s)	148, 243, 570
TaaI	ACNGT	2 cut(s)	49, 349
TaqI	TCGA	2 cut(s)	440, 525
TasI	AATT	3 cut(s)	148, 243, 570
TatI	WGTACW	3 cut(s)	163, 410, 425
TfiI	GAWTC	1 cut(s)	84
TscAI	CASTG	2 cut(s)	122, 291
TseFI	GTSAC	3 cut(s)	38, 286, 536
TseI	GCWGC	3 cut(s)	281, 336, 575
Tsp45I	GTSAC	3 cut(s)	38, 286, 536
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	2 cut(s)	122, 291
XceI	RCATGY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	527
XhoI	CTCGAG	1 cut(s)	524
ZrmI	AGTACT	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.