Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Reverse (-)

6745930 .. 6746426

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1081300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTTTGGTGGAACAAGAGATAAGTGCTTTGGCTGCAAGAATACTGTCTATCCAACAGAAAAGGTATCGGTCAACGGAACTCCTTACCACAAGATGTGTTTCAAATGCACACATGGAGGGTGTACGATCAGCCCATCGAACTACATTGCGCACGAGGGCCGGCTCTACTGCAAACACCACCACACCCAACTCATCAAGGAGAAAGGAAACTTGAGCCAGCTTGAGGGTGACCATGAGAGGATCGCGGAGGATGAGAATGTCGGTGCCAGAGAAGTTGCTACCGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044464 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

97

Amino Acids

10.76

Weight (kDa)

7.03

Isoelectric Point (pI)

28.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	9 - 63	8.3e-12	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	263
AccII	CGCG	1 cut(s)	245
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	1 cut(s)	248
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	103
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
AlwI	GGATC	1 cut(s)	248
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	263
BauI	CACGAG	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	142
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	265
BpuEI	CTTGAG	2 cut(s)	232, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse118I	RCCGGY	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	1 cut(s)	159
BshNI	GGYRCC	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	223
BsnI	GGCC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	126, 240
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	159
BssMI	GATC	2 cut(s)	126, 240
BssSI	CACGAG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	46
BstC8I	GCNNGC	2 cut(s)	161, 218
BstEII	GGTNACC	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	2 cut(s)	129, 243
BstMBI	GATC	2 cut(s)	126, 240
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstPI	GGTNACC	1 cut(s)	227
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	161, 218
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	2 cut(s)	113, 233
CviJI	RGCY	6 cut(s)	33, 132, 159, 163, 216, 220
CviKI_1	RGCY	6 cut(s)	33, 132, 159, 163, 216, 220
CviQI	GTAC	1 cut(s)	123
DpnI	GATC	2 cut(s)	128, 242
DpnII	GATC	2 cut(s)	126, 240
Eco91I	GGTNACC	1 cut(s)	227
EcoO65I	GGTNACC	1 cut(s)	227
FaeI	CATG	2 cut(s)	116, 236
FaiI	YATR	3 cut(s)	114, 234, 289
FatI	CATG	2 cut(s)	112, 232
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	34
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	1 cut(s)	160
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	2 cut(s)	116, 236
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	73, 123
Hpy8I	GTNNAC	2 cut(s)	73, 123
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	3 cut(s)	36, 108, 171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	116, 236
HspAI	GCGC	1 cut(s)	149
KroI	GCCGGC	1 cut(s)	159
KroNI	GCCGGC	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	126, 240
LpnPI	CCDG	3 cut(s)	173, 230, 280
Lsp1109I	GCAGC	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	2 cut(s)	128, 242
MboI	GATC	2 cut(s)	126, 240
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	5 cut(s)	110, 148, 217, 231, 241
MroNI	GCCGGC	1 cut(s)	159
MspI	CCGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	33
NaeI	GCCGGC	1 cut(s)	161
NdeII	GATC	2 cut(s)	126, 240
NgoMIV	GCCGGC	1 cut(s)	159
NlaIII	CATG	2 cut(s)	116, 236
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	227
NsbI	TGCGCA	1 cut(s)	150
PdiI	GCCGGC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	35
PspEI	GGTNACC	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	157
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	2 cut(s)	126, 240
Sau96I	GGNCC	1 cut(s)	157
SetI	ASST	2 cut(s)	66, 222
SmlI	CTYRAG	2 cut(s)	211, 221
SmoI	CTYRAG	2 cut(s)	211, 221
SsiI	CCGC	1 cut(s)	245
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	1 cut(s)	137
TaqII	GACCGA	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.