Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Forward (+)

13262979 .. 13264461

Gene Structure 1483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCAAGCTTTGCAAGCACCACGCAGAAGTGTACGGCCTGCGAAAAGACGGTGTATCTGGTTGATCGGCTGGCTGCCGATTCCAGAATTTACCACAAGGCCTGCTTCCGATGCCACCACTGCAAGAGTGCCCTCAAGCTCATCAACTATTGTTCATTTGAGGGGGTTCTCTACTGCAGGCCTCACTATGATCAACTCTTCAAGCGAACTGGCAGCCTGGACAAGAGTTTTGAAGGAACACCAAAAGTCGTAAAGCCAGCAAGACCTACGGAAAATGAGAATGCCAAGTCAGTCTCAAACTTGTTTGCCGGTACCAGAGATAAATGTGTGGGCTGTGAGAAAACTGTTTATCCAATTGAGAAGGTTTCCGTCAACGGGACTCCATACCACAAGAGTTGCTTCAAATGCAGCCATGGAGGTTGCACCATAAGCCCATCCAATTACATTGCACATGAAGGAAAGCTCTACTGCAAACACCACCACATCCAACTCTTCAAGGAGAAAGGAAATTACAGCCAGCTCGAAAATGAACGCGAAAAGCTTACAATGACTGAGCAAGCCACTCCTATGGAGATTGCTGCTGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

197

Amino Acids

22.1

Weight (kDa)

8.82

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	311
AccII	CGCG	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	87
AfaI	GTAC	2 cut(s)	34, 313
AfiI	CCNNNNNNNGG	1 cut(s)	375
AgsI	TTSAA	4 cut(s)	202, 233, 403, 496
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	5 cut(s)	9, 139, 463, 520, 541
AluI	AGCT	5 cut(s)	9, 139, 463, 520, 541
Alw26I	GTCTC	1 cut(s)	298
AoxI	GGCC	3 cut(s)	36, 99, 179
ApeKI	GCWGC	4 cut(s)	74, 213, 408, 578
ApoI	RAATTY	1 cut(s)	87
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
Asp718I	GGTACC	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	311
BbvI	GCAGC	4 cut(s)	61, 225, 420, 565
BccI	CCATC	1 cut(s)	442
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	218
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	298
BfmI	CTRYAG	1 cut(s)	175
BisI	GCNGC	4 cut(s)	75, 214, 409, 579
BlsI	GCNGC	4 cut(s)	76, 215, 410, 580
Bme1390I	CCNGG	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	2 cut(s)	434, 483
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	1 cut(s)	214
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	4 cut(s)	61, 225, 420, 565
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	3 cut(s)	38, 101, 181
BshNI	GGYRCC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	375
BsmAI	GTCTC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	391
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	3 cut(s)	38, 101, 181
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	64, 190
Bsp19I	CCATGG	1 cut(s)	412
BspANI	GGCC	3 cut(s)	38, 101, 181
BspCNI	CTCAG	1 cut(s)	544
BspFNI	CGCG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	587
BspLI	GGNNCC	1 cut(s)	313
BspMAI	CTGCAG	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	2 cut(s)	64, 190
BssT1I	CCWWGG	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	52, 346
Bst6I	CTCTTC	2 cut(s)	203, 497
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	9 cut(s)	7, 16, 40, 72, 103, 179, 258, 518, 558
BstDEI	CTNAG	1 cut(s)	552
BstDSI	CCRYGG	1 cut(s)	412
BstF5I	GGATG	2 cut(s)	434, 483
BstFNI	CGCG	1 cut(s)	534
BstKTI	GATC	2 cut(s)	67, 193
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	2 cut(s)	64, 190
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 15, 111, 120, 405, 429
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	133
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	4 cut(s)	61, 225, 420, 565
BstXI	CCANNNNNNTGG	1 cut(s)	568
BsuRI	GGCC	3 cut(s)	38, 101, 181
BtgI	CCRYGG	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	434, 483
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	9 cut(s)	7, 16, 40, 72, 103, 179, 258, 518, 558
CciI	TCATGA	1 cut(s)	587
Cfr10I	RCCGGY	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	33, 312
CspCI	CAANNNNNGTGG	2 cut(s)	377, 412
CviAII	CATG	3 cut(s)	413, 452, 588
CviQI	GTAC	2 cut(s)	33, 312
DdeI	CTNAG	1 cut(s)	552
DpnI	GATC	2 cut(s)	66, 192
DpnII	GATC	2 cut(s)	64, 190
Eam1104I	CTCTTC	2 cut(s)	203, 497
EarI	CTCTTC	2 cut(s)	203, 497
Eco130I	CCWWGG	1 cut(s)	412
Eco147I	AGGCCT	2 cut(s)	101, 181
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	3 cut(s)	416, 455, 591
FaiI	YATR	7 cut(s)	189, 385, 414, 428, 453, 569, 589
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 383, 415
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	3 cut(s)	412, 451, 587
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	4 cut(s)	75, 214, 409, 579
FokI	GGATG	2 cut(s)	421, 470
Fsp4HI	GCNGC	4 cut(s)	75, 214, 409, 579
GluI	GCNGC	4 cut(s)	75, 214, 409, 579
HaeIII	GGCC	3 cut(s)	38, 101, 181
HapII	CCGG	1 cut(s)	309
Hin1II	CATG	3 cut(s)	416, 455, 591
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	2 cut(s)	7, 539
HinfI	GANTC	3 cut(s)	80, 379, 584
HpaII	CCGG	1 cut(s)	309
Hpy166II	GTNNAC	2 cut(s)	33, 373
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	2 cut(s)	84, 588
Hpy8I	GTNNAC	2 cut(s)	33, 373
HpyAV	CCTTC	3 cut(s)	227, 355, 449
HpyCH4III	ACNGT	2 cut(s)	52, 346
HpyCH4V	TGCA	7 cut(s)	14, 123, 177, 408, 423, 449, 471
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 15, 111, 120, 405, 429
HpyF3I	CTNAG	1 cut(s)	552
Hsp92II	CATG	3 cut(s)	416, 455, 591
KpnI	GGTACC	1 cut(s)	315
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	64, 190
Lsp1109I	GCAGC	4 cut(s)	61, 225, 420, 565
LweI	GCATC	1 cut(s)	101
MalI	GATC	2 cut(s)	66, 192
MboI	GATC	2 cut(s)	64, 190
MboII	GAAGA	2 cut(s)	190, 484
MfeI	CAATTG	1 cut(s)	354
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	4 cut(s)	87, 354, 439, 508
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	4 cut(s)	143, 154, 192, 410
MslI	CAYNNNNRTG	1 cut(s)	566
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	218
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	6 cut(s)	11, 15, 111, 120, 405, 429
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	2 cut(s)	64, 190
NlaIII	CATG	3 cut(s)	416, 455, 591
NlaIV	GGNNCC	1 cut(s)	313
PagI	TCATGA	1 cut(s)	587
PceI	AGGCCT	2 cut(s)	101, 181
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	80, 584
PkrI	GCNGC	4 cut(s)	76, 215, 410, 580
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	179
RsaI	GTAC	2 cut(s)	34, 313
RsaNI	GTAC	2 cut(s)	33, 312
RseI	CAYNNNNRTG	1 cut(s)	566
SatI	GCNGC	4 cut(s)	75, 214, 409, 579
Sau3AI	GATC	2 cut(s)	64, 190
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	8 cut(s)	11, 141, 268, 366, 421, 465, 522, 543
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	4 cut(s)	87, 354, 439, 508
SseBI	AGGCCT	2 cut(s)	101, 181
StuI	AGGCCT	2 cut(s)	101, 181
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	2 cut(s)	52, 346
TaqI	TCGA	1 cut(s)	522
TasI	AATT	4 cut(s)	87, 354, 439, 508
TfiI	GAWTC	2 cut(s)	80, 584
TscAI	CASTG	1 cut(s)	125
TseI	GCWGC	4 cut(s)	74, 213, 408, 578
TspDTI	ATGAA	3 cut(s)	144, 468, 543
TspGWI	ACGGA	2 cut(s)	284, 358
TspRI	CASTG	1 cut(s)	125
XapI	RAATTY	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.