Rorug05G0538500

Zinc-binding domain present in Lin-11, Isl-1, Mec-3.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000896
Physical Location & Seq
Reverse (-)
72721815 .. 72730116
8302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0538500.1

Sequence Viewer

Length: 2262 bp
ATGGCGATGCGTGAGCTTGTCACCGGCGGAGCAGCCTGCGCCGTTCCGGGCTCATCTTCGTCCTCCAATCCCTTCGGCAATCTCGCCAACGCTCTTCTCAACTCCTCCGCCAAAGGCCAGGACTTAAAGGAGCTGCCTTCTTCGCTGCCCACGAGCTCCGAGGCTCAGTTTTACCCGGAGGCGCATGGCCCACAGCTGCCGGGGTCGGAGGAGTTTGACCAGCCCTACATGATGCAACCCGGAACCCAGAGCTCAGACTTTCTTCGCAATTTTAACTCTGTTGGTGGTGGTGGCAATGGACTGCTTGAAAATGCGTGGGATGAGGTACAAGGCTCTCACCATCCTCCTCCTCCTCCTATGCACGGCCCTCAGGTTATGTATGATCGCGGCGCCGCTGCTCACCTTCAACCAACATTGGATGGGCCACCACAGAGAGTGCTGTCAAGCTTTTTGCACTCATTTGTTGAAAGTAGCCGTGGTGGGATACCTTTCCGTCCTACTCAACTTCCAGTGTTGGGATTGTCTGCTGGTGACAAGCAATGCATACGTGACCGCAGCAGCATCATGGCCCGACACTTTTTTGCAGATAAGAGCGAGGATTTTATTAATGGGCAGGTAAACGCACTTCTATGCTCGCTAGATATTGACGGTGAAGCCAACAGTAAAGGGCCTCTCCCTGCAAGGTTCCGGGAACTAGAGGGTTATTGGAACGAATCCCAAGCTATCCAGAAACCTGGTGCTCATGCTACAGATGGGTGGGTCACAGAATTTAGCCAACACAGAGTAGATCGTGGTGATCCTAATGTGTGGGCTCACTCATTTGAGCAACAACATGGTGCCAATGGTTGGGCATCTGAATTCGAGCAGGAACAGTCTCAGATGATGTCTGCAGATCATATGAGAGGTGGAAATATGGCAAGCATAGCTGCAATGGAGCAGACTCGTATGCTTGCAAATACATTAGCACAGAATGAGGACCCAAAATTTCAGAAGTCAAGGTTTCTCCAGTTTGTATCAAAGATGAGTCGTGGTGAACTTATTATTGATGATAATCAAGTCAAGCAAGCCACGTCATCTACTGCTGGGGATTGGGCAGGAGAATATCAACAGCAGTACAATGCGGGTTCTAATTGGGCTAACGAATATCAGCATGGGGAGGTGGAGATATCTCGTGCCAATCAATGGGCAAATGAGTTTGGTTCTGAACAAGAGCAACATGGGTCAGTTGATGATCAGTGGGTCAATCAATTCTCTAAGTTGCATGTTGATGACTGGGCAGAGGAATTTGGAAATCAGGTTGGTGAAGGAATATTGGGGGACAGTTCTGCTGATAGCTGGGCTAACGCATATGATGAGTTCCTAAATGAGCAAGTAGCTTCCAAGCAGCAATTGGATAGTTCAAGGGGCGTCTATGTCTTTTCTGATATGAACCCTTATGTTGGTCACCCAAACCCACTGAAAGAAGGCCAGGACATGTTCCATAAAGGTCTTTTGAGTGAAGCAGTGCTTGCTTTGGAAGCTGAAGTGCTCAAGAACCCTGACAATGCCGAAGGTTGGAGGCTACTTGGAATAGCACATGCAGAAAATGATGATGATCAACAGGCTATTGCAGCCATGATGCGTGCACAGGAGGCTGATCCAACTAATCTAGAAGTGCTTCTTGCCCTTGGAGTGAGCCATACTAATGAATTGGAGCAGTCAGCTGCTTTGAAATATTTATATGGATGGCTACGTAATCACCCAAAGTATGGAGTGCTTGCGCGACCAGAGTTGTCAGAGTCTTTGTACTATGCTGATATTGCAAGAACTTTCAATGAAGCTGCTCAAATGTCACCTGAGGATGCTGACGTGCATATAGTTCTTGGTGTCCTCTACAACTTGTCAAGAGAATATGACAAAGCCATTGAGTCCTTCAGGACAGCTTTAAAACTGAAGCCGCAGGATTACTCTCTTTGGAACAAGCTTGGAGCAACACAAGCAAACAGTGTTCAGAGTGCTGATGCAATATTGGCTTATCAACAGGCGCTAGATTTGAAGCCCAACTATGTTCGTGCATGGGCTAATATGGGTATCAGCTATGCCAACCAGGGCATGTATGAGGATTCCATACGTTACTATGTTCGAGCACTTACCATGAATCCAAAGGCAGATAACGGTTGGCAGTACTTGAGAATTTCTTTAAGTTGTGCTTCTAGGAGTGACATGTTGGAAGCTTGTGATTCTCGGAATCTAGACATTCTCCTGAAGGAGTTTCCATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIM

Protein Analysis

753

Amino Acids

83.37

Weight (kDa)

4.78

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_CcmH_CycH PF23914 498 - 556 1e-07 Cytochrome c-type biogenesis protein H TPR domain
TPR_CcmH_CycH PF23914 609 - 718 2.4e-07 Cytochrome c-type biogenesis protein H TPR domain
TPR_1 PF00515 615 - 648 3.6e-06 Tetratricopeptide repeat
TPR_11 PF13414 667 - 697 1e-06 TPR repeat
TPR_1 PF00515 684 - 715 8e-08 Tetratricopeptide repeat
TPR_2 PF07719 684 - 715 7e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2260
Acc36I ACCTGC 1 cut(s) 604
AccB1I GGYRCC 2 cut(s) 389, 836
AccB7I CCANNNNNTGG 3 cut(s) 846, 1182, 1748
AccII CGCG 2 cut(s) 387, 1762
AciI CCGC 7 cut(s) 27, 108, 387, 393, 553, 1121, 1937
AclWI GGATC 2 cut(s) 791, 1631
AcsI RAATTY 5 cut(s) 767, 857, 983, 1283, 2172
AcuI CTGAAG 3 cut(s) 1542, 1897, 1952
AcyI GRCGYC 2 cut(s) 390, 1407
AfaI GTAC 4 cut(s) 327, 1115, 1787, 2165
AfiI CCNNNNNNNGG 7 cut(s) 362, 515, 846, 1182, 1439, 1554, 1748
AflIII ACRYGT 2 cut(s) 1473, 2202
AgsI TTSAA 7 cut(s) 308, 407, 467, 1401, 1711, 1813, 2035
AjiI CACGTC 2 cut(s) 1071, 1849
AjnI CCWGG 4 cut(s) 117, 733, 1467, 2085
Alw21I GWGCWC 6 cut(s) 158, 254, 742, 1530, 1627, 2128
Alw26I GTCTC 1 cut(s) 879
Alw44I GTGCAC 1 cut(s) 1623
AlwI GGATC 2 cut(s) 791, 1631
AoxI GGCC 7 cut(s) 115, 187, 364, 422, 567, 668, 1465
ApaLI GTGCAC 1 cut(s) 1623
ApoI RAATTY 5 cut(s) 767, 857, 983, 1283, 2172
AseI ATTAAT 1 cut(s) 606
Asp700I GAANNNNTTC 1 cut(s) 1656
AspLEI GCGC 5 cut(s) 41, 184, 392, 1762, 2026
AspS9I GGNCC 6 cut(s) 188, 365, 422, 568, 668, 976
AsuC2I CCSGG 5 cut(s) 48, 176, 201, 240, 689
AvaII GGWCC 1 cut(s) 976
AxyI CCTNAGG 2 cut(s) 369, 1836
BaeGI GKGCMC 1 cut(s) 1627
BanI GGYRCC 2 cut(s) 389, 836
BanII GRGCYC 4 cut(s) 53, 158, 254, 814
BarI GAAGNNNNNNTAC 2 cut(s) 609, 641
BauI CACGAG 2 cut(s) 151, 1170
Bbv12I GWGCWC 6 cut(s) 158, 254, 742, 1530, 1627, 2128
BccI CCATC 4 cut(s) 348, 413, 746, 1719
BceAI ACGGC 3 cut(s) 26, 379, 459
BciT130I CCWGG 4 cut(s) 119, 735, 1469, 2087
BciVI GTATCC 1 cut(s) 477
BclI TGATCA 2 cut(s) 1231, 1594
BcnI CCSGG 5 cut(s) 48, 176, 201, 240, 689
BcoDI GTCTC 1 cut(s) 879
BfaI CTAG 6 cut(s) 638, 695, 1649, 2027, 2193, 2231
BfmI CTRYAG 2 cut(s) 747, 888
BfoI RGCGCY 2 cut(s) 393, 2027
BfuAI ACCTGC 1 cut(s) 604
BfuI GTATCC 1 cut(s) 477
BmcAI AGTACT 1 cut(s) 2165
Bme1390I CCNGG 9 cut(s) 48, 119, 176, 201, 240, 689, 735, 1469, 2087
Bme18I GGWCC 1 cut(s) 976
BmgBI CACGTC 2 cut(s) 1071, 1849
BmgT120I GGNCC 6 cut(s) 188, 365, 422, 568, 668, 976
BmiI GGNNCC 5 cut(s) 244, 391, 686, 838, 978
BmrFI CCNGG 9 cut(s) 48, 119, 176, 201, 240, 689, 735, 1469, 2087
BmrI ACTGGG 1 cut(s) 1282
BmsI GCATC 6 cut(s) 222, 570, 860, 1608, 1831, 1990
BmuI ACTGGG 1 cut(s) 1282
BpmI CTGGAG 1 cut(s) 989
BpuEI CTTGAG 2 cut(s) 1514, 2188
BpuMI CCSGG 5 cut(s) 48, 176, 201, 240, 689
BsaAI YACGTR 2 cut(s) 548, 1733
BsaBI GATNNNNATC 2 cut(s) 1050, 1593
BsaHI GRCGYC 2 cut(s) 390, 1407
BsaJI CCNNGG 5 cut(s) 159, 200, 475, 1666, 2086
Bsc4I CCNNNNNNNGG 7 cut(s) 362, 515, 846, 1182, 1439, 1554, 1748
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 3 cut(s) 509, 1006, 1277
Bse21I CCTNAGG 2 cut(s) 369, 1836
Bse3DI GCAATG 3 cut(s) 301, 545, 936
Bse8I GATNNNNATC 2 cut(s) 1050, 1593
BseBI CCWGG 4 cut(s) 119, 735, 1469, 2087
BseDI CCNNGG 5 cut(s) 159, 200, 475, 1666, 2086
BseGI GGATG 5 cut(s) 325, 340, 424, 1730, 1846
BseJI GATNNNNATC 2 cut(s) 1050, 1593
BseLI CCNNNNNNNGG 7 cut(s) 362, 515, 846, 1182, 1439, 1554, 1748
BseMI GCAATG 3 cut(s) 301, 545, 936
BseMII CTCAG 5 cut(s) 179, 267, 383, 890, 1827
BseNI ACTGG 3 cut(s) 509, 1006, 1277
BseRI GAGGAG 5 cut(s) 94, 224, 336, 339, 342
BseSI GKGCMC 1 cut(s) 1627
BseYI CCCAGC 2 cut(s) 1082, 1335
Bsh1236I CGCG 2 cut(s) 387, 1762
BshFI GGCC 7 cut(s) 117, 189, 366, 424, 569, 670, 1467
BshNI GGYRCC 2 cut(s) 389, 836
BsiHKAI GWGCWC 6 cut(s) 158, 254, 742, 1530, 1627, 2128
BsiSI CCGG 6 cut(s) 24, 47, 176, 200, 240, 688
BslFI GGGAC 1 cut(s) 1331
BslI CCNNNNNNNGG 7 cut(s) 362, 515, 846, 1182, 1439, 1554, 1748
BsmAI GTCTC 1 cut(s) 879
BsmFI GGGAC 1 cut(s) 1331
BsnI GGCC 7 cut(s) 117, 189, 366, 424, 569, 670, 1467
Bsp1286I GDGCHC 8 cut(s) 53, 158, 254, 742, 814, 1530, 1627, 2128
Bsp143I GATC 7 cut(s) 382, 787, 796, 892, 1231, 1594, 1636
BspACI CCGC 7 cut(s) 27, 108, 387, 393, 553, 1121, 1937
BspANI GGCC 7 cut(s) 117, 189, 366, 424, 569, 670, 1467
BspCNI CTCAG 5 cut(s) 178, 266, 382, 889, 1828
BspFNI CGCG 2 cut(s) 387, 1762
BspLI GGNNCC 5 cut(s) 244, 391, 686, 838, 978
BspMAI CTGCAG 1 cut(s) 892
BspMI ACCTGC 1 cut(s) 604
BspPI GGATC 2 cut(s) 791, 1631
BspQI GCTCTTC 1 cut(s) 99
BspT107I GGYRCC 2 cut(s) 389, 836
BsrDI GCAATG 3 cut(s) 301, 545, 936
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 3 cut(s) 509, 1006, 1277
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 5 cut(s) 159, 200, 475, 1666, 2086
BssMI GATC 7 cut(s) 382, 787, 796, 892, 1231, 1594, 1636
BssNI GRCGYC 2 cut(s) 390, 1407
BssSI CACGAG 2 cut(s) 151, 1170
BssT1I CCWWGG 1 cut(s) 1666
Bst2BI CACGAG 2 cut(s) 151, 1170
Bst2UI CCWGG 4 cut(s) 119, 735, 1469, 2087
Bst4CI ACNGT 6 cut(s) 650, 662, 873, 1322, 1985, 2156
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 2 cut(s) 390, 1407
BstAPI GCANNNNNTGC 1 cut(s) 1508
BstBAI YACGTR 2 cut(s) 548, 1733
BstC8I GCNNGC 8 cut(s) 37, 635, 919, 951, 1065, 1509, 1623, 1758
BstDEI CTNAG 6 cut(s) 165, 253, 369, 876, 1254, 1836
BstDSI CCRYGG 1 cut(s) 475
BstEII GGTNACC 1 cut(s) 1442
BstF5I GGATG 5 cut(s) 325, 340, 424, 1730, 1846
BstFNI CGCG 2 cut(s) 387, 1762
BstH2I RGCGCY 2 cut(s) 393, 2027
BstHHI GCGC 5 cut(s) 41, 184, 392, 1762, 2026
BstKTI GATC 7 cut(s) 385, 790, 799, 895, 1234, 1597, 1639
BstMAI GTCTC 1 cut(s) 879
BstMBI GATC 7 cut(s) 382, 787, 796, 892, 1231, 1594, 1636
BstNI CCWGG 4 cut(s) 119, 735, 1469, 2087
BstNSI RCATGY 5 cut(s) 1265, 1477, 1580, 2095, 2206
BstPI GGTNACC 1 cut(s) 1442
BstSCI CCNGG 9 cut(s) 46, 117, 174, 199, 238, 687, 733, 1467, 2085
BstSFI CTRYAG 2 cut(s) 747, 888
BstSLI GKGCMC 1 cut(s) 1627
BstSNI TACGTA 1 cut(s) 1733
BstUI CGCG 2 cut(s) 387, 1762
BstXI CCANNNNNNTGG 1 cut(s) 734
Bsu36I CCTNAGG 2 cut(s) 369, 1836
BsuI GTATCC 1 cut(s) 477
BsuRI GGCC 7 cut(s) 117, 189, 366, 424, 569, 670, 1467
BtgI CCRYGG 1 cut(s) 475
BtgZI GCGATG 1 cut(s) 20
BtrI CACGTC 2 cut(s) 1071, 1849
BtsCI GGATG 5 cut(s) 325, 340, 424, 1730, 1846
BtsI GCAGTG 1 cut(s) 1509
BtsIMutI CAGTG 5 cut(s) 516, 1241, 1454, 1509, 1990
BveI ACCTGC 1 cut(s) 604
Cac8I GCNNGC 8 cut(s) 37, 635, 919, 951, 1065, 1509, 1623, 1758
CfoI GCGC 5 cut(s) 41, 184, 392, 1762, 2026
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 6 cut(s) 188, 365, 422, 568, 668, 976
CseI GACGC 1 cut(s) 1396
CsiI ACCWGGT 1 cut(s) 733
Csp6I GTAC 4 cut(s) 326, 1114, 1786, 2164
CviQI GTAC 4 cut(s) 326, 1114, 1786, 2164
DdeI CTNAG 6 cut(s) 165, 253, 369, 876, 1254, 1836
DinI GGCGCC 1 cut(s) 391
DpnI GATC 7 cut(s) 384, 789, 798, 894, 1233, 1596, 1638
DpnII GATC 7 cut(s) 382, 787, 796, 892, 1231, 1594, 1636
DraI TTTAAA 1 cut(s) 1926
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
EciI GGCGGA 2 cut(s) 42, 97
Ecl136II GAGCTC 2 cut(s) 156, 252
Eco105I TACGTA 1 cut(s) 1733
Eco130I CCWWGG 1 cut(s) 1666
Eco24I GRGCYC 4 cut(s) 53, 158, 254, 814
Eco32I GATATC 1 cut(s) 1167
Eco47I GGWCC 1 cut(s) 976
Eco53kI GAGCTC 2 cut(s) 156, 252
Eco57I CTGAAG 3 cut(s) 1542, 1897, 1952
Eco81I CCTNAGG 2 cut(s) 369, 1836
Eco91I GGTNACC 1 cut(s) 1442
EcoICRI GAGCTC 2 cut(s) 156, 252
EcoO109I RGGNCCY 2 cut(s) 668, 976
EcoO65I GGTNACC 1 cut(s) 1442
EcoRI GAATTC 1 cut(s) 857
EcoRII CCWGG 4 cut(s) 117, 733, 1467, 2085
EcoRV GATATC 1 cut(s) 1167
EcoT14I CCWWGG 1 cut(s) 1666
EcoT22I ATGCAT 1 cut(s) 545
EcoT38I GRGCYC 4 cut(s) 53, 158, 254, 814
EgeI GGCGCC 1 cut(s) 391
EheI GGCGCC 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 1666
FalI AAGNNNNNCTT 6 cut(s) 1491, 1523, 1644, 1676, 2173, 2205
FaqI GGGAC 1 cut(s) 1331
FauI CCCGC 1 cut(s) 1114
FauNDI CATATG 2 cut(s) 897, 1348
FbaI TGATCA 2 cut(s) 1231, 1594
FokI GGATG 5 cut(s) 327, 332, 431, 1737, 1853
FriOI GRGCYC 4 cut(s) 53, 158, 254, 814
FspBI CTAG 6 cut(s) 638, 695, 1649, 2027, 2193, 2231
GlaI GCGC 5 cut(s) 40, 183, 391, 1761, 2025
GsaI CCCAGC 2 cut(s) 1086, 1339
GsuI CTGGAG 1 cut(s) 989
HaeII RGCGCY 2 cut(s) 393, 2027
HaeIII GGCC 7 cut(s) 117, 189, 366, 424, 569, 670, 1467
HapII CCGG 6 cut(s) 24, 47, 176, 200, 240, 688
HgaI GACGC 1 cut(s) 1396
HhaI GCGC 5 cut(s) 41, 184, 392, 1762, 2026
Hin1I GRCGYC 2 cut(s) 390, 1407
Hin6I GCGC 5 cut(s) 39, 182, 390, 1760, 2024
HinP1I GCGC 5 cut(s) 39, 182, 390, 1760, 2024
HindIII AAGCTT 3 cut(s) 445, 1961, 2211
HinfI GANTC 9 cut(s) 713, 940, 1024, 1778, 1907, 2102, 2137, 2219, 2227
HpaII CCGG 6 cut(s) 24, 47, 176, 200, 240, 688
Hpy166II GTNNAC 3 cut(s) 619, 1034, 1625
Hpy188III TCNNGA 7 cut(s) 727, 1531, 1649, 1884, 1915, 2231, 2242
Hpy8I GTNNAC 3 cut(s) 619, 1034, 1625
HpyAV CCTTC 8 cut(s) 82, 147, 413, 1298, 1457, 1544, 1921, 2239
HpyCH4III ACNGT 6 cut(s) 650, 662, 873, 1322, 1985, 2156
HpyCH4IV ACGT 5 cut(s) 547, 1070, 1732, 1848, 2110
HpyF3I CTNAG 6 cut(s) 165, 253, 369, 876, 1254, 1836
HpySE526I ACGT 5 cut(s) 547, 1070, 1732, 1848, 2110
Hsp92I GRCGYC 2 cut(s) 390, 1407
HspAI GCGC 5 cut(s) 39, 182, 390, 1760, 2024
KasI GGCGCC 1 cut(s) 389
Ksp22I TGATCA 2 cut(s) 1231, 1594
Kzo9I GATC 7 cut(s) 382, 787, 796, 892, 1231, 1594, 1636
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 6 cut(s) 29, 130, 161, 934, 1693, 1967
LweI GCATC 6 cut(s) 222, 570, 860, 1608, 1831, 1990
MabI ACCWGGT 1 cut(s) 733
MaeI CTAG 6 cut(s) 638, 695, 1649, 2027, 2193, 2231
MaeII ACGT 5 cut(s) 547, 1070, 1732, 1848, 2110
MaeIII GTNAC 8 cut(s) 19, 530, 548, 760, 1442, 1830, 2111, 2198
MalI GATC 7 cut(s) 384, 789, 798, 894, 1233, 1596, 1638
MboI GATC 7 cut(s) 382, 787, 796, 892, 1231, 1594, 1636
MboII GAAGA 4 cut(s) 48, 86, 132, 254
MfeI CAATTG 1 cut(s) 1388
MhlI GDGCHC 8 cut(s) 53, 158, 254, 742, 814, 1530, 1627, 2128
Mly113I GGCGCC 1 cut(s) 390
MlyI GAGTC 4 cut(s) 934, 1033, 1787, 1916
MmeI TCCRAC 4 cut(s) 186, 1535, 1664, 2187
Mph1103I ATGCAT 1 cut(s) 545
MroXI GAANNNNTTC 1 cut(s) 1656
MseI TTAA 5 cut(s) 125, 273, 606, 1925, 2180
MslI CAYNNNNRTG 3 cut(s) 628, 1266, 1683
MspA1I CMGCKG 3 cut(s) 196, 395, 1703
MspI CCGG 6 cut(s) 24, 47, 176, 200, 240, 688
MspR9I CCNGG 9 cut(s) 48, 119, 176, 201, 240, 689, 735, 1469, 2087
MunI CAATTG 1 cut(s) 1388
MvaI CCWGG 4 cut(s) 119, 735, 1469, 2087
MvnI CGCG 2 cut(s) 387, 1762
NarI GGCGCC 1 cut(s) 390
NciI CCSGG 5 cut(s) 48, 176, 201, 240, 689
NdeI CATATG 2 cut(s) 897, 1348
NdeII GATC 7 cut(s) 382, 787, 796, 892, 1231, 1594, 1636
NlaIV GGNNCC 5 cut(s) 244, 391, 686, 838, 978
NmuCI GTSAC 7 cut(s) 19, 530, 548, 760, 1442, 1830, 2198
NsiI ATGCAT 1 cut(s) 545
NspI RCATGY 5 cut(s) 1265, 1477, 1580, 2095, 2206
PciI ACATGT 2 cut(s) 1473, 2202
PciSI GCTCTTC 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 1656
PfeI GAWTC 5 cut(s) 713, 2102, 2137, 2219, 2227
PflMI CCANNNNNTGG 3 cut(s) 846, 1182, 1748
PfoI TCCNGGA 1 cut(s) 687
PleI GAGTC 4 cut(s) 934, 1032, 1786, 1915
PluTI GGCGCC 1 cut(s) 393
PpsI GAGTC 4 cut(s) 934, 1032, 1786, 1915
Ppu21I YACGTR 2 cut(s) 548, 1733
PpuMI RGGWCCY 1 cut(s) 976
PscI ACATGT 2 cut(s) 1473, 2202
PshBI ATTAAT 1 cut(s) 606
PsiI TTATAA 1 cut(s) 2260
Psp124BI GAGCTC 2 cut(s) 158, 254
Psp5II RGGWCCY 1 cut(s) 976
Psp6I CCWGG 4 cut(s) 117, 733, 1467, 2085
PspEI GGTNACC 1 cut(s) 1442
PspFI CCCAGC 2 cut(s) 1082, 1335
PspGI CCWGG 4 cut(s) 117, 733, 1467, 2085
PspN4I GGNNCC 5 cut(s) 244, 391, 686, 838, 978
PspPI GGNCC 6 cut(s) 188, 365, 422, 568, 668, 976
PspPPI RGGWCCY 1 cut(s) 976
PstI CTGCAG 1 cut(s) 892
PvuII CAGCTG 2 cut(s) 196, 1703
RsaI GTAC 4 cut(s) 327, 1115, 1787, 2165
RsaNI GTAC 4 cut(s) 326, 1114, 1786, 2164
RseI CAYNNNNRTG 3 cut(s) 628, 1266, 1683
SacI GAGCTC 2 cut(s) 158, 254
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 5 cut(s) 125, 273, 606, 1925, 2180
Sau3AI GATC 7 cut(s) 382, 787, 796, 892, 1231, 1594, 1636
Sau96I GGNCC 6 cut(s) 188, 365, 422, 568, 668, 976
ScaI AGTACT 1 cut(s) 2165
SchI GAGTC 4 cut(s) 934, 1033, 1787, 1916
ScrFI CCNGG 9 cut(s) 48, 119, 176, 201, 240, 689, 735, 1469, 2087
SduI GDGCHC 8 cut(s) 53, 158, 254, 742, 814, 1530, 1627, 2128
SexAI ACCWGGT 1 cut(s) 733
SfaNI GCATC 6 cut(s) 222, 570, 860, 1608, 1831, 1990
SfcI CTRYAG 2 cut(s) 747, 888
SfoI GGCGCC 1 cut(s) 391
SgrAI CRCCGGYG 1 cut(s) 23
SinI GGWCC 1 cut(s) 976
SmiMI CAYNNNNRTG 3 cut(s) 628, 1266, 1683
SmlI CTYRAG 2 cut(s) 1529, 2167
SmoI CTYRAG 2 cut(s) 1529, 2167
SnaBI TACGTA 1 cut(s) 1733
SsiI CCGC 7 cut(s) 27, 108, 387, 393, 553, 1121, 1937
SspDI GGCGCC 1 cut(s) 389
SspI AATATT 3 cut(s) 1311, 1715, 2007
SspMI CTAG 6 cut(s) 638, 695, 1649, 2027, 2193, 2231
SstI GAGCTC 2 cut(s) 158, 254
StyD4I CCNGG 9 cut(s) 46, 117, 174, 199, 238, 687, 733, 1467, 2085
StyI CCWWGG 1 cut(s) 1666
TaaI ACNGT 6 cut(s) 650, 662, 873, 1322, 1985, 2156
TaiI ACGT 5 cut(s) 550, 1073, 1735, 1851, 2113
TaqI TCGA 2 cut(s) 861, 2122
TatI WGTACW 3 cut(s) 1113, 1785, 2163
TauI GCSGC 3 cut(s) 390, 395, 1939
TfiI GAWTC 5 cut(s) 713, 2102, 2137, 2219, 2227
Tru1I TTAA 5 cut(s) 125, 273, 606, 1925, 2180
Tru9I TTAA 5 cut(s) 125, 273, 606, 1925, 2180
TscAI CASTG 5 cut(s) 516, 1241, 1461, 1509, 1990
TseFI GTSAC 7 cut(s) 19, 530, 548, 760, 1442, 1830, 2198
Tsp45I GTSAC 7 cut(s) 19, 530, 548, 760, 1442, 1830, 2198
TspDTI ATGAA 4 cut(s) 1442, 1701, 1830, 2150
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 5 cut(s) 516, 1241, 1461, 1509, 1990
Van91I CCANNNNNTGG 3 cut(s) 846, 1182, 1748
VneI GTGCAC 1 cut(s) 1623
VpaK11BI GGWCC 1 cut(s) 976
VspI ATTAAT 1 cut(s) 606
XapI RAATTY 5 cut(s) 767, 857, 983, 1283, 2172
XbaI TCTAGA 2 cut(s) 1648, 2230
XceI RCATGY 5 cut(s) 1265, 1477, 1580, 2095, 2206
XcmI CCANNNNNNNNNTGG 1 cut(s) 1387
XmnI GAANNNNTTC 1 cut(s) 1656
XspI CTAG 6 cut(s) 638, 695, 1649, 2027, 2193, 2231
ZrmI AGTACT 1 cut(s) 2165
Zsp2I ATGCAT 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.