Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Reverse (-)

24846377 .. 24848459

Gene Structure 2083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCATTTGCAGGAACAACCCAGAAGTGCATGGCTTGTGACAAAACCGTGTATCTGGTTGATAAGCTCACAGCTGATAACAGAATCTTCCACAAAGCCTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAAGCTCAGCAACTACAATTCATTTGAGGGAGTACTTTACTGCAGGCCACACTTTGACCAACTCTTCAAAAGAACCGGGAGTCTTGACAAAAGCTTTGAAGGCACACCGAAAATTGTAAAACCAGAGAGACCTATTGACAGTGAGAAACCTGCAGCGTCTAAAGCTTCGGGCATGTTTGGTGGAACCAGAGATAAATGCTTTGGTTGCAAGAATACCGTCTATCCAACAGAAAAGGTTACGGTGAATGGAACTCCCTACCACAAGATGTGTTTCAAATGCACACATGGAGGGTGCACAATCAGTCCATCGAACTACATTGCGCACGAGGGACGCCTCTACTGCAAGCACCACCACACCCAACTCATCAGGGAGAAAGGAAACTTGAGCCAGCTCGAGGGTGGTGGTGACAATGAGAAAGCCACAGCAGTTGCTGCTGAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044464 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

192

Amino Acids

21.21

Weight (kDa)

9.05

Isoelectric Point (pI)

29.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 65	8.9e-10	LIM domain
LIM	PF00412	110 - 164	3.9e-11	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	453
Acc36I	ACCTGC	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	463
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	526
AgsI	TTSAA	3 cut(s)	199, 230, 406
AluBI	AGCT	6 cut(s)	67, 74, 136, 225, 296, 523
AluI	AGCT	6 cut(s)	67, 74, 136, 225, 296, 523
Alw21I	GWGCWC	1 cut(s)	428
Alw26I	GTCTC	1 cut(s)	253
Alw44I	GTGCAC	1 cut(s)	424
AlwNI	CAGNNNCTG	1 cut(s)	563
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	1 cut(s)	176
ApaLI	GTGCAC	1 cut(s)	424
ApeKI	GCWGC	2 cut(s)	284, 563
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspLEI	GCGC	1 cut(s)	454
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	2 cut(s)	385, 548
AvaI	CYCGRG	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	428
BauI	CACGAG	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	428
BbvI	GCAGC	2 cut(s)	296, 550
BccI	CCATC	2 cut(s)	120, 445
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	253
BfmI	CTRYAG	2 cut(s)	172, 282
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	2 cut(s)	285, 564
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	2 cut(s)	286, 565
BmcAI	AGTACT	1 cut(s)	165
Bme1390I	CCNGG	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	524
BmiI	GGNNCC	2 cut(s)	127, 316
BmrFI	CCNGG	1 cut(s)	208
BmsI	GCATC	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	2 cut(s)	116, 535
BpuMI	CCSGG	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse3DI	GCAATG	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	151
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	296, 550
BshFI	GGCC	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	428
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	474
BsnI	GGCC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp1720I	GCTNAGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	127, 316
BspMAI	CTGCAG	2 cut(s)	176, 286
BspMI	ACCTGC	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	447
BssNI	GRCGYC	1 cut(s)	463
BssSI	CACGAG	1 cut(s)	455
Bst2BI	CACGAG	1 cut(s)	455
Bst4CI	ACNGT	4 cut(s)	49, 272, 349, 373
Bst6I	CTCTTC	1 cut(s)	200
BstACI	GRCGYC	1 cut(s)	463
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	4 cut(s)	100, 176, 476, 521
BstDEI	CTNAG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	454
BstMAI	GTCTC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 117, 231, 293, 336, 471, 563
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	206
BstSFI	CTRYAG	2 cut(s)	172, 282
BstSLI	GKGCMC	1 cut(s)	428
BstV1I	GCAGC	2 cut(s)	296, 550
BsuRI	GGCC	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	115, 277
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	4 cut(s)	100, 176, 476, 521
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	1 cut(s)	454
CseI	GACGC	2 cut(s)	276, 471
Csp6I	GTAC	1 cut(s)	164
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviAII	CATG	3 cut(s)	31, 304, 416
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	88
Eco88I	CYCGRG	1 cut(s)	524
FaeI	CATG	3 cut(s)	34, 307, 419
FaiI	YATR	4 cut(s)	32, 305, 417, 574
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	3 cut(s)	30, 303, 415
Fnu4HI	GCNGC	2 cut(s)	285, 564
Fsp4HI	GCNGC	2 cut(s)	285, 564
FspI	TGCGCA	1 cut(s)	453
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	2 cut(s)	285, 564
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	2 cut(s)	276, 471
HhaI	GCGC	1 cut(s)	454
Hin1I	GRCGYC	1 cut(s)	463
Hin1II	CATG	3 cut(s)	34, 307, 419
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HindIII	AAGCTT	2 cut(s)	223, 294
HinfI	GANTC	2 cut(s)	84, 211
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	385, 548
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	1 cut(s)	107
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	426
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	4 cut(s)	49, 272, 349, 373
HpyCH4V	TGCA	9 cut(s)	11, 30, 120, 174, 284, 339, 411, 426, 474
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 117, 231, 293, 336, 471, 563
HpyF3I	CTNAG	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	463
Hsp92II	CATG	3 cut(s)	34, 307, 419
HspAI	GCGC	1 cut(s)	452
Lsp1109I	GCAGC	2 cut(s)	296, 550
LweI	GCATC	1 cut(s)	98
MaeIII	GTNAC	3 cut(s)	38, 367, 536
MboII	GAAGA	2 cut(s)	79, 187
MhlI	GDGCHC	1 cut(s)	428
MluCI	AATT	2 cut(s)	148, 243
MlyI	GAGTC	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	6 cut(s)	140, 151, 413, 451, 476, 520
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	7 cut(s)	108, 117, 231, 293, 336, 471, 563
NciI	CCSGG	1 cut(s)	208
NlaIII	CATG	3 cut(s)	34, 307, 419
NlaIV	GGNNCC	2 cut(s)	127, 316
NmuCI	GTSAC	2 cut(s)	38, 536
NsbI	TGCGCA	1 cut(s)	453
NspI	RCATGY	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	524
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	286, 565
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	127, 316
PspXI	VCTCGAGB	1 cut(s)	524
PstI	CTGCAG	2 cut(s)	176, 286
PstNI	CAGNNNCTG	1 cut(s)	563
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SatI	GCNGC	2 cut(s)	285, 564
ScaI	AGTACT	1 cut(s)	165
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	1 cut(s)	428
SetI	ASST	9 cut(s)	69, 76, 138, 227, 265, 283, 298, 369, 525
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	2 cut(s)	172, 282
Sfr274I	CTCGAG	1 cut(s)	524
SlaI	CTCGAG	1 cut(s)	524
SmlI	CTYRAG	3 cut(s)	131, 514, 524
SmoI	CTYRAG	3 cut(s)	131, 514, 524
Sse9I	AATT	2 cut(s)	148, 243
StyD4I	CCNGG	1 cut(s)	206
TaaI	ACNGT	4 cut(s)	49, 272, 349, 373
TaqI	TCGA	2 cut(s)	440, 525
TasI	AATT	2 cut(s)	148, 243
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	84
TscAI	CASTG	2 cut(s)	122, 277
TseFI	GTSAC	2 cut(s)	38, 536
TseI	GCWGC	2 cut(s)	284, 563
Tsp45I	GTSAC	2 cut(s)	38, 536
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	2 cut(s)	122, 277
VneI	GTGCAC	1 cut(s)	424
XceI	RCATGY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	527
XhoI	CTCGAG	1 cut(s)	524
ZrmI	AGTACT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.