Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Reverse (-)

2992937 .. 2998276

Gene Structure 5340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03760.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCCACCTTCGCAGGAACCTCCCAGAAGTGCACAGCCTGCGAAAAGACGGTGTATCTGGTTGACAAGTTAACAGCTGATTCCAGATCCTACCACAAGGCCTGCTTCCGATGCCACCACTGCAAAGGTACCCTAAAGCTGCAGCTCAGCAACTACTGCTCATTTGAGGGAGTCCTATACTGCAGGCCTCACTATGATCAACTCTTCAAGCGAACTGGTAGCCTAGATAAGAGTTTTGAAGGCACACCAAAAATTTTGAAACCAGAAAAACCTACTGAGAATGAGAATACCAAGGCAGTGTCAAGCTTGTTTGGTGGTACCAAAGATAAATGTGTGGGATGTGAAAAGACTGTATATCCCATTGAGAAGGTCTCTGTGAATGGGACTGCATATCACAGGAGGTGCTTCAAATGCACCCATGGAGGTTGCACCATAAGCCCATCTAACTATATCGCACATGAAGGAAAGCTCTACTGCAAACACCACCACATCCAGCTCTTCAAGGAGAAAGGGAATTACAGCCAGCTTGAAAATGAACGTGAAAAGCAATCAACGAACGAGCAAGCCACCTCAGTGGAGATTGCTAGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

198

Amino Acids

22.23

Weight (kDa)

8.89

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	11 - 68	1.8e-08	LIM domain
LIM	PF00412	111 - 167	1e-11	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	128, 317
AccB1I	GGYRCC	2 cut(s)	128, 317
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	252
AfaI	GTAC	2 cut(s)	130, 319
AgsI	TTSAA	6 cut(s)	208, 239, 259, 409, 502, 530
AleI	CACNNNNGTG	1 cut(s)	572
AluBI	AGCT	7 cut(s)	77, 139, 145, 306, 469, 496, 526
AluI	AGCT	7 cut(s)	77, 139, 145, 306, 469, 496, 526
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	376
Alw44I	GTGCAC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	3 cut(s)	3, 99, 185
ApaLI	GTGCAC	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	139, 142
ApoI	RAATTY	1 cut(s)	252
Asp718I	GGTACC	2 cut(s)	128, 317
BaeGI	GKGCMC	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	128, 317
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	126, 154
BccI	CCATC	1 cut(s)	448
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	2 cut(s)	224, 585
BfmI	CTRYAG	2 cut(s)	140, 181
BisI	GCNGC	2 cut(s)	140, 143
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	2 cut(s)	141, 144
BmiI	GGNNCC	3 cut(s)	19, 130, 319
BmsI	GCATC	1 cut(s)	101
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
Bpu1102I	GCTNAGC	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	2 cut(s)	291, 418
Bse1I	ACTGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	291, 418
BseGI	GGATG	2 cut(s)	344, 489
BseMII	CTCAG	3 cut(s)	160, 267, 585
BseNI	ACTGG	1 cut(s)	220
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	126, 154
BshFI	GGCC	3 cut(s)	5, 101, 187
BshNI	GGYRCC	2 cut(s)	128, 317
BsiHKAI	GWGCWC	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	397
BsmAI	GTCTC	1 cut(s)	376
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	5, 101, 187
Bso31I	GGTCTC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	86, 196
Bsp1720I	GCTNAGC	1 cut(s)	146
Bsp19I	CCATGG	1 cut(s)	418
BspANI	GGCC	3 cut(s)	5, 101, 187
BspCNI	CTCAG	3 cut(s)	159, 268, 584
BspLI	GGNNCC	3 cut(s)	19, 130, 319
BspMAI	CTGCAG	2 cut(s)	144, 185
BspPI	GGATC	1 cut(s)	81
BspQI	GCTCTTC	1 cut(s)	503
BspT107I	GGYRCC	2 cut(s)	128, 317
BspTNI	GGTCTC	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	291, 418
BssMI	GATC	2 cut(s)	86, 196
BssT1I	CCWWGG	2 cut(s)	291, 418
Bst4CI	ACNGT	2 cut(s)	52, 352
Bst6I	CTCTTC	2 cut(s)	209, 503
BstAPI	GCANNNNNTGC	2 cut(s)	39, 156
BstC8I	GCNNGC	5 cut(s)	40, 103, 185, 524, 564
BstDEI	CTNAG	3 cut(s)	146, 276, 571
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	2 cut(s)	344, 489
BstKTI	GATC	2 cut(s)	89, 199
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	2 cut(s)	86, 196
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 39, 111, 120, 156, 411, 435
BstSFI	CTRYAG	2 cut(s)	140, 181
BstSLI	GKGCMC	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	126, 154
BstX2I	RGATCY	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	5, 101, 187
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	344, 489
BtsI	GCAGTG	2 cut(s)	118, 303
BtsIMutI	CAGTG	4 cut(s)	118, 303, 579, 589
Cac8I	GCNNGC	5 cut(s)	40, 103, 185, 524, 564
Csp6I	GTAC	2 cut(s)	129, 318
CviAII	CATG	2 cut(s)	419, 458
CviQI	GTAC	2 cut(s)	129, 318
DdeI	CTNAG	3 cut(s)	146, 276, 571
DpnI	GATC	2 cut(s)	88, 198
DpnII	GATC	2 cut(s)	86, 196
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	209, 503
EarI	CTCTTC	2 cut(s)	209, 503
Eco130I	CCWWGG	2 cut(s)	291, 418
Eco147I	AGGCCT	2 cut(s)	101, 187
Eco31I	GGTCTC	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	291, 418
ErhI	CCWWGG	2 cut(s)	291, 418
FaeI	CATG	2 cut(s)	422, 461
FaiI	YATR	8 cut(s)	178, 195, 355, 391, 420, 434, 450, 459
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	2 cut(s)	418, 457
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	140, 143
FokI	GGATG	2 cut(s)	351, 476
Fsp4HI	GCNGC	2 cut(s)	140, 143
FspBI	CTAG	2 cut(s)	224, 585
GluI	GCNGC	2 cut(s)	140, 143
HaeIII	GGCC	3 cut(s)	5, 101, 187
Hin1II	CATG	2 cut(s)	422, 461
HincII	GTYRAC	2 cut(s)	64, 72
HindII	GTYRAC	2 cut(s)	64, 72
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	2 cut(s)	80, 171
HpaI	GTTAAC	1 cut(s)	72
Hpy166II	GTNNAC	3 cut(s)	33, 64, 72
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	1 cut(s)	84
Hpy8I	GTNNAC	3 cut(s)	33, 64, 72
HpyAV	CCTTC	4 cut(s)	19, 233, 361, 455
HpyCH4III	ACNGT	2 cut(s)	52, 352
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	8 cut(s)	33, 123, 142, 183, 389, 414, 429, 477
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 39, 111, 120, 156, 411, 435
HpyF3I	CTNAG	3 cut(s)	146, 276, 571
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	2 cut(s)	422, 461
KpnI	GGTACC	2 cut(s)	132, 321
Ksp22I	TGATCA	1 cut(s)	196
KspAI	GTTAAC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	86, 196
LguI	GCTCTTC	1 cut(s)	503
Lsp1109I	GCAGC	2 cut(s)	126, 154
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	2 cut(s)	224, 585
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	2 cut(s)	88, 198
MboI	GATC	2 cut(s)	86, 196
MboII	GAAGA	2 cut(s)	196, 490
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	35
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	252, 514
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	6 cut(s)	31, 160, 198, 393, 416, 580
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	572
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	77
MwoI	GCNNNNNNNGC	7 cut(s)	11, 39, 111, 120, 156, 411, 435
NcoI	CCATGG	1 cut(s)	418
NdeII	GATC	2 cut(s)	86, 196
NlaIII	CATG	2 cut(s)	422, 461
NlaIV	GGNNCC	3 cut(s)	19, 130, 319
NmuCI	GTSAC	1 cut(s)	587
OliI	CACNNNNGTG	1 cut(s)	572
PceI	AGGCCT	2 cut(s)	101, 187
PciSI	GCTCTTC	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	141, 144
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PspN4I	GGNNCC	3 cut(s)	19, 130, 319
PstI	CTGCAG	2 cut(s)	144, 185
PsuI	RGATCY	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	2 cut(s)	130, 319
RsaNI	GTAC	2 cut(s)	129, 318
RseI	CAYNNNNRTG	1 cut(s)	572
SapI	GCTCTTC	1 cut(s)	503
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	2 cut(s)	140, 143
Sau3AI	GATC	2 cut(s)	86, 196
SchI	GAGTC	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	2 cut(s)	140, 181
SmiMI	CAYNNNNRTG	1 cut(s)	572
Sse9I	AATT	2 cut(s)	252, 514
SseBI	AGGCCT	2 cut(s)	101, 187
SspMI	CTAG	2 cut(s)	224, 585
StuI	AGGCCT	2 cut(s)	101, 187
StyI	CCWWGG	2 cut(s)	291, 418
TaaI	ACNGT	2 cut(s)	52, 352
TaiI	ACGT	1 cut(s)	541
TasI	AATT	2 cut(s)	252, 514
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	3 cut(s)	125, 303, 579
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	2 cut(s)	139, 142
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	2 cut(s)	474, 549
TspRI	CASTG	3 cut(s)	125, 303, 579
VneI	GTGCAC	1 cut(s)	31
XapI	RAATTY	1 cut(s)	252
XspI	CTAG	2 cut(s)	224, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.