Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Forward (+)

67275462 .. 67277516

Gene Structure 2055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27853

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCATTTGCAGGAACAACCCAGAAATGCATGGCTTGTGACAAAACTGTGTATCTGGTTGATAAGCTCACAGCTGATAACAGAATCTATCACAAGGCCTGCTTTAGATGCCACCACTGCAAAGGAACCCTCAAGCTCAGCAACTACAATTCATTTGAGGGAGTACTTTACTGCAGGCCACACTTTGATCAACTCTTCAAAAGAACTGGCAGTCTTGACAAAAGCTTTGAAGGCACACCAAAAATTGTAAAACCAGAGAGACCTGTTGATAATGAGAAAGCAGTGGCTAAAGCTTCAAGCATGTTTGGTGGAACCAGGGATAAATGCTTTGGCTGCAAGAAAACTGTTTATCCAACAGAAAAGGTTTCGGTGAATGGAACTCCCTACCACAAGATGTGCTTCAAATGTACACATGGAGGGTGTACAATCAGCCCATCGAACTACATTGCACATGAGGGCCGCCTCTACTGCAAGCACCACCACACCCAACTCATCAAGGAGAAAGGAAACTTGAGCCAACTCGAGGGTGGTGGTGACCATGATGAGAAAGTAGTCGGTGCCACAGAAATTGCTCCTGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044464 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

194

Amino Acids

21.64

Weight (kDa)

8.94

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 65	5.4e-10	LIM domain
LIM	PF00412	109 - 163	2.2e-11	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	557
AciI	CCGC	1 cut(s)	460
AfaI	GTAC	3 cut(s)	165, 409, 424
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	4 cut(s)	199, 230, 297, 403
AjnI	CCWGG	1 cut(s)	314
AluBI	AGCT	5 cut(s)	67, 74, 136, 225, 293
AluI	AGCT	5 cut(s)	67, 74, 136, 225, 293
Alw26I	GTCTC	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	3 cut(s)	96, 176, 457
ApeKI	GCWGC	1 cut(s)	333
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspS9I	GGNCC	1 cut(s)	457
AsuHPI	GGTGA	2 cut(s)	382, 545
AvaI	CYCGRG	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	557
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	1 cut(s)	442
BciT130I	CCWGG	1 cut(s)	316
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	253
BfmI	CTRYAG	1 cut(s)	172
BisI	GCNGC	2 cut(s)	334, 460
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	2 cut(s)	335, 461
BmcAI	AGTACT	1 cut(s)	165
Bme1390I	CCNGG	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	3 cut(s)	127, 313, 559
BmrFI	CCNGG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	2 cut(s)	116, 532
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	151
BseNI	ACTGG	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	320
BshFI	GGCC	3 cut(s)	98, 178, 459
BshNI	GGYRCC	1 cut(s)	557
BsiHKCI	CYCGRG	1 cut(s)	521
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	253
BsnI	GGCC	3 cut(s)	98, 178, 459
Bso31I	GGTCTC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	521
Bsp1407I	TGTACA	2 cut(s)	407, 422
Bsp143I	GATC	1 cut(s)	187
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	3 cut(s)	98, 178, 459
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	3 cut(s)	127, 313, 559
BspMAI	CTGCAG	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	444
BsrGI	TGTACA	2 cut(s)	407, 422
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	49, 346
Bst6I	CTCTTC	1 cut(s)	200
BstAUI	TGTACA	2 cut(s)	407, 422
BstC8I	GCNNGC	3 cut(s)	100, 176, 473
BstDEI	CTNAG	1 cut(s)	137
BstEII	GGTNACC	1 cut(s)	533
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 117, 231, 333, 468
BstNI	CCWGG	1 cut(s)	316
BstNSI	RCATGY	1 cut(s)	304
BstPI	GGTNACC	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	314
BstSFI	CTRYAG	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	320
BsuRI	GGCC	3 cut(s)	98, 178, 459
BtsI	GCAGTG	2 cut(s)	115, 288
BtsIMutI	CAGTG	2 cut(s)	115, 288
Cac8I	GCNNGC	3 cut(s)	100, 176, 473
Cfr13I	GGNCC	1 cut(s)	457
Csp6I	GTAC	3 cut(s)	164, 408, 423
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CviAII	CATG	5 cut(s)	31, 301, 413, 452, 539
CviQI	GTAC	3 cut(s)	164, 408, 423
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco147I	AGGCCT	1 cut(s)	98
Eco31I	GGTCTC	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	521
Eco91I	GGTNACC	1 cut(s)	533
EcoO65I	GGTNACC	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	314
EcoT22I	ATGCAT	1 cut(s)	32
FaeI	CATG	5 cut(s)	34, 304, 416, 455, 542
FaiI	YATR	6 cut(s)	32, 302, 414, 453, 540, 583
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 383, 415
FatI	CATG	5 cut(s)	30, 300, 412, 451, 538
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	334, 460
Fsp4HI	GCNGC	2 cut(s)	334, 460
GluI	GCNGC	2 cut(s)	334, 460
HaeIII	GGCC	3 cut(s)	98, 178, 459
Hin1II	CATG	5 cut(s)	34, 304, 416, 455, 542
HindIII	AAGCTT	2 cut(s)	223, 291
HinfI	GANTC	1 cut(s)	84
HphI	GGTGA	2 cut(s)	382, 545
Hpy166II	GTNNAC	2 cut(s)	410, 423
Hpy188III	TCNNGA	2 cut(s)	215, 575
Hpy8I	GTNNAC	2 cut(s)	410, 423
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	2 cut(s)	49, 346
HpyCH4V	TGCA	7 cut(s)	11, 30, 120, 174, 336, 449, 471
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 117, 231, 333, 468
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	5 cut(s)	34, 304, 416, 455, 542
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	577
LpnPI	CCDG	9 cut(s)	35, 41, 112, 160, 192, 267, 276, 301, 328
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	1 cut(s)	98
MaeIII	GTNAC	2 cut(s)	38, 533
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	1 cut(s)	187
MluCI	AATT	3 cut(s)	148, 243, 567
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	6 cut(s)	140, 151, 410, 448, 473, 517
Mph1103I	ATGCAT	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	5 cut(s)	108, 117, 231, 333, 468
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	5 cut(s)	34, 304, 416, 455, 542
NlaIV	GGNNCC	3 cut(s)	127, 313, 559
NmuCI	GTSAC	2 cut(s)	38, 533
NsiI	ATGCAT	1 cut(s)	32
NspI	RCATGY	1 cut(s)	304
PaeR7I	CTCGAG	1 cut(s)	521
PceI	AGGCCT	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	335, 461
Psp6I	CCWGG	1 cut(s)	314
PspEI	GGTNACC	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	3 cut(s)	127, 313, 559
PspPI	GGNCC	1 cut(s)	457
PspXI	VCTCGAGB	1 cut(s)	521
PstI	CTGCAG	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	3 cut(s)	165, 409, 424
RsaNI	GTAC	3 cut(s)	164, 408, 423
SatI	GCNGC	2 cut(s)	334, 460
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	457
ScaI	AGTACT	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	316
SetI	ASST	7 cut(s)	69, 76, 138, 227, 265, 295, 366
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	1 cut(s)	172
Sfr274I	CTCGAG	1 cut(s)	521
SlaI	CTCGAG	1 cut(s)	521
SmlI	CTYRAG	3 cut(s)	131, 511, 521
SmoI	CTYRAG	3 cut(s)	131, 511, 521
Sse9I	AATT	3 cut(s)	148, 243, 567
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	1 cut(s)	460
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	314
TaaI	ACNGT	2 cut(s)	49, 346
TaqI	TCGA	2 cut(s)	437, 522
TasI	AATT	3 cut(s)	148, 243, 567
TatI	WGTACW	3 cut(s)	163, 407, 422
TauI	GCSGC	1 cut(s)	462
TfiI	GAWTC	1 cut(s)	84
TscAI	CASTG	2 cut(s)	122, 288
TseFI	GTSAC	2 cut(s)	38, 533
TseI	GCWGC	1 cut(s)	333
Tsp45I	GTSAC	2 cut(s)	38, 533
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	2 cut(s)	122, 288
XceI	RCATGY	1 cut(s)	304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XhoI	CTCGAG	1 cut(s)	521
ZrmI	AGTACT	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.