Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Reverse (-)

20363646 .. 20365661

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15890.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCAACATTTGCAGGGACGACCCAGAAGTGCAAAGCGTGTGAGAAGACAGTCTACTTGGTTGATCAGCTCACTGCTGACAACAAAGTCTACCACAAGGCTTGCTTCAGATGCCGCCACTGCAAGGGCACCCTCAAGCTCAGTAACTATTCCTCTTTTGAGGGTGTTTTATATTGCAAGCCTCACTTTGATCAGCTATTTAAGATGACCGGCAGCTTGGATAAAAGTTTTGAAGGTATACCAAAAACTGTTCGAGAAAGATCCGATCAGACCAACAGTAAAGTTTCGAACTTATTTGCTGGTACTCAAGACAAGTGTGTTGCTTGCCAGAAAACAGTTTACCCCATCGAAAAGGTGGCTGTTGACGGCACATCATACCATAAACCTTGCTTCAGGTGCAGTCATGGAGGCTGTGTGATCAGTCCATCAAACTATGTAGCTCATGAGCATCGTCTCTACTGCAGGCATCACCATAGCCAACTCTTCAAGGAGAAGGGAAACTTCAGCCAGCTTAGCAAGCATGACGAAGTTAAAGAGGTGACTGAGAATACAGACGCAGAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

189

Amino Acids

21.27

Weight (kDa)

8.77

Isoelectric Point (pI)

22.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	128
AccI	GTMKAC	3 cut(s)	54, 90, 238
AciI	CCGC	1 cut(s)	115
AclWI	GGATC	1 cut(s)	255
AcuI	CTGAAG	3 cut(s)	91, 376, 487
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	233, 487
AluBI	AGCT	6 cut(s)	70, 139, 196, 216, 440, 511
AluI	AGCT	6 cut(s)	70, 139, 196, 216, 440, 511
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	461, 550
AsuII	TTCGAA	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	128
BarI	GAAGNNNNNNTAC	2 cut(s)	38, 70
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	353, 433
BceAI	ACGGC	1 cut(s)	382
BclI	TGATCA	3 cut(s)	64, 190, 417
BcoDI	GTCTC	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	460
BisI	GCNGC	2 cut(s)	115, 214
BlpI	GCTNAGC	1 cut(s)	512
BlsI	GCNGC	2 cut(s)	116, 215
BmiI	GGNNCC	1 cut(s)	130
BmsI	GCATC	3 cut(s)	101, 457, 475
BpiI	GAAGAC	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	512
Bpu14I	TTCGAA	1 cut(s)	287
BpuEI	CTTGAG	2 cut(s)	119, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse118I	RCCGGY	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	2 cut(s)	154, 534
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	225
BsgI	GTGCAG	1 cut(s)	418
BshNI	GGYRCC	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	458
BsmBI	CGTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	31
Bsp119I	TTCGAA	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	5 cut(s)	64, 190, 260, 265, 417
Bsp1720I	GCTNAGC	1 cut(s)	512
BspACI	CCGC	1 cut(s)	115
BspCNI	CTCAG	2 cut(s)	153, 535
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	464
BspPI	GGATC	1 cut(s)	255
BspT104I	TTCGAA	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssMI	GATC	5 cut(s)	64, 190, 260, 265, 417
BssNAI	GTATAC	1 cut(s)	239
Bst1107I	GTATAC	1 cut(s)	239
Bst4CI	ACNGT	4 cut(s)	52, 250, 278, 337
Bst6I	CTCTTC	1 cut(s)	488
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstBI	TTCGAA	1 cut(s)	287
BstC8I	GCNNGC	6 cut(s)	103, 179, 325, 464, 509, 518
BstDEI	CTNAG	4 cut(s)	140, 512, 543, 564
BstKTI	GATC	5 cut(s)	67, 193, 263, 268, 420
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	5 cut(s)	64, 190, 260, 265, 417
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 111, 120, 396, 513, 517
BstSFI	CTRYAG	1 cut(s)	460
BstSLI	GKGCMC	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BstZ17I	GTATAC	1 cut(s)	239
BtsI	GCAGTG	2 cut(s)	72, 118
BtsIMutI	CAGTG	2 cut(s)	72, 118
Cac8I	GCNNGC	6 cut(s)	103, 179, 325, 464, 509, 518
CciI	TCATGA	1 cut(s)	442
Cfr10I	RCCGGY	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	303
CspCI	CAANNNNNGTGG	2 cut(s)	83, 118
CviAII	CATG	3 cut(s)	404, 443, 521
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	4 cut(s)	140, 512, 543, 564
DpnI	GATC	5 cut(s)	66, 192, 262, 267, 419
DpnII	GATC	5 cut(s)	64, 190, 260, 265, 417
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
Eco57I	CTGAAG	3 cut(s)	91, 376, 487
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	3 cut(s)	407, 446, 524
FaiI	YATR	9 cut(s)	172, 239, 376, 381, 405, 435, 444, 474, 522
FalI	AAGNNNNNCTT	6 cut(s)	89, 121, 170, 202, 485, 517
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	3 cut(s)	403, 442, 520
FbaI	TGATCA	3 cut(s)	64, 190, 417
FblI	GTMKAC	3 cut(s)	54, 90, 238
Fnu4HI	GCNGC	2 cut(s)	115, 214
Fsp4HI	GCNGC	2 cut(s)	115, 214
GluI	GCNGC	2 cut(s)	115, 214
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	3 cut(s)	407, 446, 524
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	461, 550
Hpy166II	GTNNAC	5 cut(s)	55, 91, 239, 340, 364
Hpy188I	TCNGA	3 cut(s)	110, 265, 270
Hpy188III	TCNNGA	3 cut(s)	254, 308, 443
Hpy8I	GTNNAC	5 cut(s)	55, 91, 239, 340, 364
HpyAV	CCTTC	2 cut(s)	227, 487
HpyCH4III	ACNGT	4 cut(s)	52, 250, 278, 337
HpyCH4V	TGCA	6 cut(s)	14, 33, 123, 177, 399, 462
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 111, 120, 396, 513, 517
HpyF3I	CTNAG	4 cut(s)	140, 512, 543, 564
Hsp92II	CATG	3 cut(s)	407, 446, 524
Ksp22I	TGATCA	3 cut(s)	64, 190, 417
Kzo9I	GATC	5 cut(s)	64, 190, 260, 265, 417
LpnPI	CCDG	7 cut(s)	38, 223, 285, 341, 379, 448, 521
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	3 cut(s)	101, 457, 475
MaeIII	GTNAC	2 cut(s)	143, 538
MalI	GATC	5 cut(s)	66, 192, 262, 267, 419
MboI	GATC	5 cut(s)	64, 190, 260, 265, 417
MboII	GAAGA	2 cut(s)	58, 475
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	131
MnlI	CCTC	7 cut(s)	143, 154, 163, 192, 401, 529, 553
MseI	TTAA	2 cut(s)	201, 531
MspI	CCGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	6 cut(s)	11, 111, 120, 396, 513, 517
NdeII	GATC	5 cut(s)	64, 190, 260, 265, 417
NlaIII	CATG	3 cut(s)	407, 446, 524
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	538
NspV	TTCGAA	1 cut(s)	287
PagI	TCATGA	1 cut(s)	442
PkrI	GCNGC	2 cut(s)	116, 215
PspN4I	GGNNCC	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	201, 531
SatI	GCNGC	2 cut(s)	115, 214
Sau3AI	GATC	5 cut(s)	64, 190, 260, 265, 417
SduI	GDGCHC	1 cut(s)	131
SfaNI	GCATC	3 cut(s)	101, 457, 475
SfcI	CTRYAG	1 cut(s)	460
SfuI	TTCGAA	1 cut(s)	287
SmlI	CTYRAG	2 cut(s)	134, 306
SmoI	CTYRAG	2 cut(s)	134, 306
SsiI	CCGC	1 cut(s)	115
TaaI	ACNGT	4 cut(s)	52, 250, 278, 337
TaqI	TCGA	3 cut(s)	253, 287, 348
TauI	GCSGC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	201, 531
Tru9I	TTAA	2 cut(s)	201, 531
TscAI	CASTG	2 cut(s)	79, 125
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	538
TspRI	CASTG	2 cut(s)	79, 125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmiI	GTMKAC	3 cut(s)	54, 90, 238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.