Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Reverse (-)

4725018 .. 4726805

Gene Structure 1788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1068200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCATTTGCAGGAACAACTCAGAAGTGCATGGCTTGTGACAAGACTGTGTATCTGGTGGACAAGCTCACAGCTGATAACCGAATCTACCACAAAGCCTGCTTCCGATGCCACCACTGCAGGGGTACCCTCAAGCTTAGCAACTACAACTCCTTTGAGGGAGTACTCTACTGCAGGCCACATTTTGATCAGCTCTTCAAAAGAACCGGCAGTCTTGACAAAAGTTTTGAAGGGACACCAAAAATTGTGAAACCAGAGAGACCTGTTGATAATGAGAAACCTGCAGTAGCGAAGGCTTCAAGCATGTTTGGTGGAACCAGAGAAAAGTGCTTTGGCTGCAGGAATACCGTCTATCCAACAGAAAAGGTGTCAGTGAACGGAACTCCTTACCACAAGATGTGTTTCAAATGCACACATGGAGGGTGTACAATCAGCCCATCGAACTACATTGCACATGAGGGCCGGCTCTACTGCAAGCACCACCACACCCAACTCATCAAGGAGAAGGGAAACTTGAGCCAGCTTGAGGGTGACAATGAAAAGATCGCCGTGGATGAGAATGGCAGAGAAGTTGCTGCTGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044464 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

196

Amino Acids

21.93

Weight (kDa)

8.87

Isoelectric Point (pI)

26.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 65	5.6e-10	LIM domain
LIM	PF00412	110 - 164	7.2e-11	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	125
AfaI	GTAC	3 cut(s)	127, 165, 427
AfiI	CCNNNNNNNGG	2 cut(s)	121, 526
AgsI	TTSAA	4 cut(s)	199, 230, 300, 406
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AluBI	AGCT	5 cut(s)	67, 74, 136, 193, 523
AluI	AGCT	5 cut(s)	67, 74, 136, 193, 523
Alw26I	GTCTC	1 cut(s)	253
AoxI	GGCC	2 cut(s)	176, 460
ApeKI	GCWGC	2 cut(s)	336, 575
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
Asp718I	GGTACC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	323, 562
BccI	CCATC	1 cut(s)	445
BceAI	ACGGC	1 cut(s)	533
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	253
BfmI	CTRYAG	4 cut(s)	118, 172, 282, 337
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	2 cut(s)	337, 576
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	2 cut(s)	338, 577
BmcAI	AGTACT	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	2 cut(s)	127, 316
BmsI	GCATC	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	3 cut(s)	116, 535, 545
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	549
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 526
Bse118I	RCCGGY	2 cut(s)	206, 462
Bse3DI	GCAATG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	549
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	2 cut(s)	121, 526
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	323, 562
BshFI	GGCC	2 cut(s)	178, 462
BshNI	GGYRCC	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	207, 463
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	2 cut(s)	121, 526
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	178, 462
Bso31I	GGTCTC	1 cut(s)	253
Bsp1407I	TGTACA	1 cut(s)	425
Bsp143I	GATC	2 cut(s)	187, 543
Bsp1720I	GCTNAGC	1 cut(s)	137
BspANI	GGCC	2 cut(s)	178, 462
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	127, 316
BspMAI	CTGCAG	4 cut(s)	122, 176, 286, 341
BspMI	ACCTGC	1 cut(s)	289
BspQI	GCTCTTC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	2 cut(s)	206, 462
BsrGI	TGTACA	1 cut(s)	425
BssAI	RCCGGY	2 cut(s)	206, 462
BssECI	CCNNGG	1 cut(s)	549
BssMI	GATC	2 cut(s)	187, 543
Bst4CI	ACNGT	2 cut(s)	49, 349
Bst6I	CTCTTC	1 cut(s)	200
BstAUI	TGTACA	1 cut(s)	425
BstC8I	GCNNGC	5 cut(s)	100, 176, 464, 476, 521
BstDEI	CTNAG	2 cut(s)	21, 137
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	1 cut(s)	559
BstKTI	GATC	2 cut(s)	190, 546
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	2 cut(s)	187, 543
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 117, 336
BstNSI	RCATGY	1 cut(s)	307
BstSFI	CTRYAG	4 cut(s)	118, 172, 282, 337
BstV1I	GCAGC	2 cut(s)	323, 562
BsuRI	GGCC	2 cut(s)	178, 462
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	115, 378
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	5 cut(s)	100, 176, 464, 476, 521
Cfr10I	RCCGGY	2 cut(s)	206, 462
Cfr13I	GGNCC	1 cut(s)	460
Csp6I	GTAC	3 cut(s)	126, 164, 426
CviAII	CATG	4 cut(s)	31, 304, 416, 455
CviQI	GTAC	3 cut(s)	126, 164, 426
DdeI	CTNAG	2 cut(s)	21, 137
DpnI	GATC	2 cut(s)	189, 545
DpnII	GATC	2 cut(s)	187, 543
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	253
FaeI	CATG	4 cut(s)	34, 307, 419, 458
FaiI	YATR	5 cut(s)	32, 305, 417, 456, 586
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	4 cut(s)	30, 303, 415, 454
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	337, 576
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	2 cut(s)	337, 576
GluI	GCNGC	2 cut(s)	337, 576
HaeIII	GGCC	2 cut(s)	178, 462
HapII	CCGG	2 cut(s)	207, 463
Hin1II	CATG	4 cut(s)	34, 307, 419, 458
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	2 cut(s)	207, 463
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	3 cut(s)	61, 376, 426
Hpy188I	TCNGA	2 cut(s)	24, 107
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	3 cut(s)	61, 376, 426
HpyAV	CCTTC	3 cut(s)	224, 286, 499
HpyCH4III	ACNGT	2 cut(s)	49, 349
HpyCH4V	TGCA	9 cut(s)	11, 30, 120, 174, 284, 339, 411, 452, 474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 117, 336
HpyF3I	CTNAG	2 cut(s)	21, 137
Hsp92II	CATG	4 cut(s)	34, 307, 419, 458
KpnI	GGTACC	1 cut(s)	129
KroI	GCCGGC	1 cut(s)	462
KroNI	GCCGGC	1 cut(s)	464
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	187, 543
LguI	GCTCTTC	1 cut(s)	200
Lsp1109I	GCAGC	2 cut(s)	323, 562
LweI	GCATC	1 cut(s)	98
MaeIII	GTNAC	2 cut(s)	38, 530
MalI	GATC	2 cut(s)	189, 545
MboI	GATC	2 cut(s)	187, 543
MboII	GAAGA	1 cut(s)	187
MluCI	AATT	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	5 cut(s)	140, 151, 413, 451, 520
MroNI	GCCGGC	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	2 cut(s)	207, 463
MwoI	GCNNNNNNNGC	3 cut(s)	108, 117, 336
NaeI	GCCGGC	1 cut(s)	464
NdeII	GATC	2 cut(s)	187, 543
NgoMIV	GCCGGC	1 cut(s)	462
NlaIII	CATG	4 cut(s)	34, 307, 419, 458
NlaIV	GGNNCC	2 cut(s)	127, 316
NmuCI	GTSAC	2 cut(s)	38, 530
NspI	RCATGY	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	200
PdiI	GCCGGC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	338, 577
PspN4I	GGNNCC	2 cut(s)	127, 316
PspPI	GGNCC	1 cut(s)	460
PstI	CTGCAG	4 cut(s)	122, 176, 286, 341
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	3 cut(s)	127, 165, 427
RsaNI	GTAC	3 cut(s)	126, 164, 426
SapI	GCTCTTC	1 cut(s)	200
SatI	GCNGC	2 cut(s)	337, 576
Sau3AI	GATC	2 cut(s)	187, 543
Sau96I	GGNCC	1 cut(s)	460
ScaI	AGTACT	1 cut(s)	165
SetI	ASST	8 cut(s)	69, 76, 138, 195, 265, 283, 369, 525
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	4 cut(s)	118, 172, 282, 337
SmlI	CTYRAG	3 cut(s)	131, 514, 524
SmoI	CTYRAG	3 cut(s)	131, 514, 524
Sse9I	AATT	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	49, 349
TaqI	TCGA	1 cut(s)	440
TasI	AATT	1 cut(s)	243
TatI	WGTACW	2 cut(s)	163, 425
TfiI	GAWTC	1 cut(s)	84
TscAI	CASTG	2 cut(s)	122, 378
TseFI	GTSAC	2 cut(s)	38, 530
TseI	GCWGC	2 cut(s)	336, 575
Tsp45I	GTSAC	2 cut(s)	38, 530
TspDTI	ATGAA	1 cut(s)	552
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	122, 378
XceI	RCATGY	1 cut(s)	307
ZrmI	AGTACT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.