RLG00000015065

Zinc-binding domain present in Lin-11, Isl-1, Mec-3.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000896
Physical Location & Seq
Forward (+)
61142460 .. 61147190
4731 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015065

Sequence Viewer

Length: 807 bp
ATGGAAATCAAACTCTCTCCCTCTCTTCTCTATGTCTCACTGTGCAGTGTCTGGCCACCCAGAAAAGATGATGAAGAGAAGGATCAGATGGAAGCGCTGCAAACTTTCTCAGGTATCTGCATCTCTACGCAGTTGGTTAATTCAGTCGGTTTTCCTCGGGTCTGTAGTTGTGCTCAAGTTCTTGTTGAGCCTATGACTCATAGACAAGGGTTGGTTGTTGTGAGGTTGGATTGGAAGCTGTCCATGGCCACCTTCGCAGGAACCTCCCAGAAATGCACAGCCTGCGAAAAGACGGTGTATCTGGTTGACAAGTTAACAGCTGATTCCAGATCCTACCACAAAGCCTGCTTCCGATGCCACCACTGCAGAGGTACCCTAAAGCTCAGCAACTTCTGCTCATTTGAGGGAGTCCTATACTGCAGGCCTCACTATGATCAACTCTTCAAGCGAACTGGTAGTCTGGATAAGAGTTTTGAAGGCACGCCAAAAATTTTGAAACCAGAAAAACCTACGATTGAGAATGAGAATAGCAAGACAGTATCAAACATGTTTGTTGGTACCAAAGATAAATGTGTGGGATGTGAAAAGACAGTTTATCCCATTGAGAAGGTCTCGGTGAATGGGACTTCATACCACAGGAGGTGCTTCAAATGCACCCATGGAGGTTGCACCATAAGCCCATCTAACTATATTGCACATGAAGGAAAGCTCTACTGCAAACACCACCACATCCAACTCTTCAAGGAGAGAGGGAATTACAGCCAGCTTGAGAATGAACGTGAAAAGCAATCGGAGACTGGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIM

Protein Analysis

269

Amino Acids

30.39

Weight (kDa)

8.76

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIM PF00412 92 - 147 2.6e-09 LIM domain
LIM PF00412 191 - 247 1.4e-11 LIM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 371, 557
AccB1I GGYRCC 2 cut(s) 371, 557
AclWI GGATC 2 cut(s) 90, 324
AcoI YGGCCR 2 cut(s) 53, 246
AcsI RAATTY 1 cut(s) 489
AfaI GTAC 2 cut(s) 373, 559
AfeI AGCGCT 1 cut(s) 96
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 5 cut(s) 445, 476, 496, 649, 742
AluBI AGCT 5 cut(s) 238, 320, 382, 709, 766
AluI AGCT 5 cut(s) 238, 320, 382, 709, 766
Alw21I GWGCWC 1 cut(s) 175
Alw26I GTCTC 3 cut(s) 40, 616, 788
AlwI GGATC 2 cut(s) 90, 324
AlwNI CAGNNNCTG 1 cut(s) 51
Ama87I CYCGRG 1 cut(s) 156
Aor51HI AGCGCT 1 cut(s) 96
AoxI GGCC 3 cut(s) 53, 246, 422
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 489
ArsI GACNNNNNNTTYG 2 cut(s) 442, 474
Asp718I GGTACC 2 cut(s) 371, 557
AspLEI GCGC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 628
AvaI CYCGRG 1 cut(s) 156
BalI TGGCCA 2 cut(s) 55, 248
BanI GGYRCC 2 cut(s) 371, 557
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 84
BccI CCATC 2 cut(s) 82, 688
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 3 cut(s) 40, 616, 788
BfmI CTRYAG 3 cut(s) 163, 364, 418
BfoI RGCGCY 1 cut(s) 98
BisI GCNGC 1 cut(s) 98
BlpI GCTNAGC 1 cut(s) 383
BlsI GCNGC 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 156
BmiI GGNNCC 3 cut(s) 262, 373, 559
BmsI GCATC 2 cut(s) 129, 344
BplI GAGNNNNNCTC 2 cut(s) 596, 628
Bpu1102I GCTNAGC 1 cut(s) 383
BpuEI CTTGAG 2 cut(s) 159, 788
BsaI GGTCTC 1 cut(s) 616
BsaJI CCNNGG 3 cut(s) 155, 243, 658
Bse1I ACTGG 2 cut(s) 457, 802
BseDI CCNNGG 3 cut(s) 155, 243, 658
BseGI GGATG 2 cut(s) 584, 729
BseMII CTCAG 2 cut(s) 123, 397
BseNI ACTGG 2 cut(s) 457, 802
BseXI GCAGC 1 cut(s) 84
BsgI GTGCAG 1 cut(s) 64
BshFI GGCC 3 cut(s) 55, 248, 424
BshNI GGYRCC 2 cut(s) 371, 557
BsiHKAI GWGCWC 1 cut(s) 175
BsiHKCI CYCGRG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 637
BsmAI GTCTC 3 cut(s) 40, 616, 788
BsmFI GGGAC 1 cut(s) 637
BsnI GGCC 3 cut(s) 55, 248, 424
Bso31I GGTCTC 1 cut(s) 616
BsoBI CYCGRG 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 3 cut(s) 82, 329, 433
Bsp1720I GCTNAGC 1 cut(s) 383
Bsp19I CCATGG 2 cut(s) 243, 658
BspANI GGCC 3 cut(s) 55, 248, 424
BspCNI CTCAG 2 cut(s) 122, 396
BspLI GGNNCC 3 cut(s) 262, 373, 559
BspMAI CTGCAG 2 cut(s) 368, 422
BspPI GGATC 2 cut(s) 90, 324
BspT107I GGYRCC 2 cut(s) 371, 557
BspTNI GGTCTC 1 cut(s) 616
BsrI ACTGG 2 cut(s) 457, 802
BssECI CCNNGG 3 cut(s) 155, 243, 658
BssMI GATC 3 cut(s) 82, 329, 433
BssT1I CCWWGG 2 cut(s) 243, 658
Bst4CI ACNGT 4 cut(s) 42, 295, 538, 592
Bst6I CTCTTC 4 cut(s) 30, 69, 446, 743
BstAPI GCANNNNNTGC 2 cut(s) 282, 393
BstC8I GCNNGC 5 cut(s) 283, 346, 422, 482, 764
BstDEI CTNAG 2 cut(s) 109, 383
BstDSI CCRYGG 2 cut(s) 243, 658
BstF5I GGATG 2 cut(s) 584, 729
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 3 cut(s) 85, 332, 436
BstMAI GTCTC 3 cut(s) 40, 616, 788
BstMBI GATC 3 cut(s) 82, 329, 433
BstMWI GCNNNNNNNGC 7 cut(s) 254, 282, 354, 363, 393, 651, 675
BstNSI RCATGY 1 cut(s) 550
BstSFI CTRYAG 3 cut(s) 163, 364, 418
BstV1I GCAGC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BsuRI GGCC 3 cut(s) 55, 248, 424
BtgI CCRYGG 2 cut(s) 243, 658
BtsCI GGATG 2 cut(s) 584, 729
BtsI GCAGTG 2 cut(s) 52, 361
BtsIMutI CAGTG 3 cut(s) 38, 52, 361
Cac8I GCNNGC 5 cut(s) 283, 346, 422, 482, 764
CaiI CAGNNNCTG 1 cut(s) 51
CfoI GCGC 1 cut(s) 97
Csp6I GTAC 2 cut(s) 372, 558
CviAII CATG 4 cut(s) 244, 547, 659, 698
CviQI GTAC 2 cut(s) 372, 558
DdeI CTNAG 2 cut(s) 109, 383
DpnI GATC 3 cut(s) 84, 331, 435
DpnII GATC 3 cut(s) 82, 329, 433
EaeI YGGCCR 2 cut(s) 53, 246
Eam1104I CTCTTC 4 cut(s) 30, 69, 446, 743
EarI CTCTTC 4 cut(s) 30, 69, 446, 743
Eco130I CCWWGG 2 cut(s) 243, 658
Eco147I AGGCCT 1 cut(s) 424
Eco31I GGTCTC 1 cut(s) 616
Eco47III AGCGCT 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 156
EcoT14I CCWWGG 2 cut(s) 243, 658
ErhI CCWWGG 2 cut(s) 243, 658
FaeI CATG 4 cut(s) 247, 550, 662, 701
FaqI GGGAC 1 cut(s) 637
FatI CATG 4 cut(s) 243, 546, 658, 697
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 2 cut(s) 591, 716
Fsp4HI GCNGC 1 cut(s) 98
GlaI GCGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 98
HaeIII GGCC 3 cut(s) 55, 248, 424
HhaI GCGC 1 cut(s) 97
Hin1II CATG 4 cut(s) 247, 550, 662, 701
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HincII GTYRAC 2 cut(s) 307, 315
HindII GTYRAC 2 cut(s) 307, 315
HinfI GANTC 3 cut(s) 196, 323, 408
HpaI GTTAAC 1 cut(s) 315
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 2 cut(s) 307, 315
Hpy188I TCNGA 3 cut(s) 87, 353, 793
Hpy188III TCNNGA 2 cut(s) 327, 461
Hpy8I GTNNAC 2 cut(s) 307, 315
HpyAV CCTTC 5 cut(s) 73, 262, 470, 601, 695
HpyCH4III ACNGT 4 cut(s) 42, 295, 538, 592
HpyCH4IV ACGT 1 cut(s) 778
HpyF10VI GCNNNNNNNGC 7 cut(s) 254, 282, 354, 363, 393, 651, 675
HpyF3I CTNAG 2 cut(s) 109, 383
HpySE526I ACGT 1 cut(s) 778
Hsp92II CATG 4 cut(s) 247, 550, 662, 701
HspAI GCGC 1 cut(s) 95
KpnI GGTACC 2 cut(s) 375, 561
Ksp22I TGATCA 1 cut(s) 433
KspAI GTTAAC 1 cut(s) 315
Kzo9I GATC 3 cut(s) 82, 329, 433
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 2 cut(s) 129, 344
MaeII ACGT 1 cut(s) 778
MalI GATC 3 cut(s) 84, 331, 435
MboI GATC 3 cut(s) 82, 329, 433
MboII GAAGA 4 cut(s) 17, 86, 433, 730
MflI RGATCY 1 cut(s) 329
MhlI GDGCHC 1 cut(s) 175
MlsI TGGCCA 2 cut(s) 55, 248
MluCI AATT 3 cut(s) 139, 489, 754
MluNI TGGCCA 2 cut(s) 55, 248
MlyI GAGTC 2 cut(s) 190, 417
MmeI TCCRAC 2 cut(s) 207, 757
Mox20I TGGCCA 2 cut(s) 55, 248
MscI TGGCCA 2 cut(s) 55, 248
MseI TTAA 2 cut(s) 138, 314
Msp20I TGGCCA 2 cut(s) 55, 248
MspA1I CMGCKG 1 cut(s) 320
MwoI GCNNNNNNNGC 7 cut(s) 254, 282, 354, 363, 393, 651, 675
NcoI CCATGG 2 cut(s) 243, 658
NdeII GATC 3 cut(s) 82, 329, 433
NlaIII CATG 4 cut(s) 247, 550, 662, 701
NlaIV GGNNCC 3 cut(s) 262, 373, 559
NspI RCATGY 1 cut(s) 550
PceI AGGCCT 1 cut(s) 424
PciI ACATGT 1 cut(s) 546
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 1 cut(s) 99
PleI GAGTC 2 cut(s) 190, 416
PpsI GAGTC 2 cut(s) 190, 416
PscI ACATGT 1 cut(s) 546
PspN4I GGNNCC 3 cut(s) 262, 373, 559
PstI CTGCAG 2 cut(s) 368, 422
PstNI CAGNNNCTG 1 cut(s) 51
PsuI RGATCY 1 cut(s) 329
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 2 cut(s) 373, 559
RsaNI GTAC 2 cut(s) 372, 558
SaqAI TTAA 2 cut(s) 138, 314
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 3 cut(s) 82, 329, 433
SchI GAGTC 2 cut(s) 190, 417
SduI GDGCHC 1 cut(s) 175
SfaNI GCATC 2 cut(s) 129, 344
SfcI CTRYAG 3 cut(s) 163, 364, 418
SmlI CTYRAG 2 cut(s) 174, 767
SmoI CTYRAG 2 cut(s) 174, 767
Sse9I AATT 3 cut(s) 139, 489, 754
SseBI AGGCCT 1 cut(s) 424
StuI AGGCCT 1 cut(s) 424
StyI CCWWGG 2 cut(s) 243, 658
TaaI ACNGT 4 cut(s) 42, 295, 538, 592
TaiI ACGT 1 cut(s) 781
TasI AATT 3 cut(s) 139, 489, 754
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 2 cut(s) 138, 314
Tru9I TTAA 2 cut(s) 138, 314
TscAI CASTG 3 cut(s) 45, 52, 368
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 4 cut(s) 87, 618, 714, 789
TspRI CASTG 3 cut(s) 45, 52, 368
XapI RAATTY 1 cut(s) 489
XceI RCATGY 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.