Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Reverse (-)

5224823 .. 5226197

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCATTTGCAGGAACAACTCAGAAGTGCATGGCTTGTGACAAGACAGTGTATCTGGTGGACAAGCTCACAGCTGATAACCGAGTCTACCACAAAGCCTGCTTTCGGTGCCACCACTGCAGAGGAACCCTCAAGCTCAGCAACTACAATTCCTTTGAGGGAGTACTCTACTGCAGGCCACATTTTGATCAGCTCTTCAAAAGAACCGGCAGTCTTGACAAAAGTTTTGAAGGGACACCAAAACTTGTAAAACCAGATAAACCTATTGATAATGAGAAATCTGCAGTTGCGAAAGCTTCAAGCATGTTTGGTGGAACCAGAGATAAGTGCTTTGGCTGCAAGAATACTGTTTATCCAACAGAAAAGGTCTCGGTGAACGGAACTCCTTACCACAAGATGTGTTTCAAATGCACACATGGAGGGTGTACAATCAGCCCATCAAACTACATTGCGCACGAGGGTCGGCTCTACTGCAAACACCACCACACCCAACTCATCAAGGAGAAAGGAAACTTGAGCCAGCTTGAGGGTGACCATGAGAAGATCGCGGAGGATGAGAAAGTCGGCGCCAGAGAAGTTGCTGCCGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044464 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

198

Amino Acids

22.07

Weight (kDa)

8.86

Isoelectric Point (pI)

22.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	453
AccB1I	GGYRCC	2 cut(s)	108, 566
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	1 cut(s)	548
AciI	CCGC	1 cut(s)	548
AcyI	GRCGYC	1 cut(s)	567
AfaI	GTAC	2 cut(s)	165, 427
AfiI	CCNNNNNNNGG	2 cut(s)	105, 526
AgsI	TTSAA	4 cut(s)	199, 230, 300, 406
AluBI	AGCT	6 cut(s)	67, 74, 136, 193, 296, 523
AluI	AGCT	6 cut(s)	67, 74, 136, 193, 296, 523
Alw26I	GTCTC	1 cut(s)	373
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	336, 581
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspLEI	GCGC	2 cut(s)	454, 569
AsuHPI	GGTGA	2 cut(s)	385, 542
BanI	GGYRCC	2 cut(s)	108, 566
BauI	CACGAG	1 cut(s)	455
BbvI	GCAGC	2 cut(s)	323, 568
BccI	CCATC	1 cut(s)	445
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	373
BfmI	CTRYAG	3 cut(s)	118, 172, 282
BfoI	RGCGCY	1 cut(s)	570
BisI	GCNGC	2 cut(s)	337, 582
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	2 cut(s)	338, 583
BmcAI	AGTACT	1 cut(s)	165
BmiI	GGNNCC	4 cut(s)	110, 127, 316, 568
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	3 cut(s)	116, 535, 545
BsaHI	GRCGYC	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 526
Bse118I	RCCGGY	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	447
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	2 cut(s)	105, 526
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	2 cut(s)	35, 151
BseXI	GCAGC	2 cut(s)	323, 568
Bsh1236I	CGCG	1 cut(s)	548
BshFI	GGCC	1 cut(s)	178
BshNI	GGYRCC	2 cut(s)	108, 566
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	2 cut(s)	105, 526
BsmAI	GTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	373
Bsp1407I	TGTACA	1 cut(s)	425
Bsp143I	GATC	2 cut(s)	187, 543
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	1 cut(s)	548
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	2 cut(s)	34, 150
BspFNI	CGCG	1 cut(s)	548
BspLI	GGNNCC	4 cut(s)	110, 127, 316, 568
BspMAI	CTGCAG	3 cut(s)	122, 176, 286
BspQI	GCTCTTC	1 cut(s)	200
BspT107I	GGYRCC	2 cut(s)	108, 566
BspTNI	GGTCTC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	206
BsrGI	TGTACA	1 cut(s)	425
BssAI	RCCGGY	1 cut(s)	206
BssMI	GATC	2 cut(s)	187, 543
BssNI	GRCGYC	1 cut(s)	567
BssSI	CACGAG	1 cut(s)	455
Bst2BI	CACGAG	1 cut(s)	455
Bst4CI	ACNGT	2 cut(s)	49, 349
Bst6I	CTCTTC	1 cut(s)	200
BstACI	GRCGYC	1 cut(s)	567
BstAUI	TGTACA	1 cut(s)	425
BstC8I	GCNNGC	3 cut(s)	100, 176, 521
BstDEI	CTNAG	2 cut(s)	21, 137
BstEII	GGTNACC	1 cut(s)	530
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	1 cut(s)	548
BstH2I	RGCGCY	1 cut(s)	570
BstHHI	GCGC	2 cut(s)	454, 569
BstKTI	GATC	2 cut(s)	190, 546
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	2 cut(s)	187, 543
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 117, 336
BstNSI	RCATGY	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	530
BstSFI	CTRYAG	3 cut(s)	118, 172, 282
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	2 cut(s)	323, 568
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	54, 115
Cac8I	GCNNGC	3 cut(s)	100, 176, 521
CfoI	GCGC	2 cut(s)	454, 569
Cfr10I	RCCGGY	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	164, 426
CviAII	CATG	4 cut(s)	31, 304, 416, 536
CviQI	GTAC	2 cut(s)	164, 426
DdeI	CTNAG	2 cut(s)	21, 137
DinI	GGCGCC	1 cut(s)	568
DpnI	GATC	2 cut(s)	189, 545
DpnII	GATC	2 cut(s)	187, 543
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	373
Eco91I	GGTNACC	1 cut(s)	530
EcoO65I	GGTNACC	1 cut(s)	530
EgeI	GGCGCC	1 cut(s)	568
EheI	GGCGCC	1 cut(s)	568
FaeI	CATG	4 cut(s)	34, 307, 419, 539
FaiI	YATR	5 cut(s)	32, 305, 417, 537, 592
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	4 cut(s)	30, 303, 415, 535
FbaI	TGATCA	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	337, 582
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	2 cut(s)	337, 582
FspI	TGCGCA	1 cut(s)	453
GlaI	GCGC	2 cut(s)	453, 568
GluI	GCNGC	2 cut(s)	337, 582
HaeII	RGCGCY	1 cut(s)	570
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	1 cut(s)	207
HhaI	GCGC	2 cut(s)	454, 569
Hin1I	GRCGYC	1 cut(s)	567
Hin1II	CATG	4 cut(s)	34, 307, 419, 539
Hin6I	GCGC	2 cut(s)	452, 567
HinP1I	GCGC	2 cut(s)	452, 567
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	385, 542
Hpy166II	GTNNAC	4 cut(s)	61, 88, 376, 426
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	4 cut(s)	61, 88, 376, 426
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	2 cut(s)	49, 349
HpyCH4V	TGCA	8 cut(s)	11, 30, 120, 174, 284, 339, 411, 474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 117, 336
HpyF3I	CTNAG	2 cut(s)	21, 137
Hsp92I	GRCGYC	1 cut(s)	567
Hsp92II	CATG	4 cut(s)	34, 307, 419, 539
HspAI	GCGC	2 cut(s)	452, 567
KasI	GGCGCC	1 cut(s)	566
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	187, 543
LguI	GCTCTTC	1 cut(s)	200
LpnPI	CCDG	8 cut(s)	41, 112, 160, 220, 267, 331, 533, 583
Lsp1109I	GCAGC	2 cut(s)	323, 568
MaeIII	GTNAC	2 cut(s)	38, 530
MalI	GATC	2 cut(s)	189, 545
MboI	GATC	2 cut(s)	187, 543
MboII	GAAGA	2 cut(s)	187, 553
MluCI	AATT	1 cut(s)	148
Mly113I	GGCGCC	1 cut(s)	567
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	7 cut(s)	116, 140, 151, 413, 451, 520, 544
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	3 cut(s)	108, 117, 336
NarI	GGCGCC	1 cut(s)	567
NdeII	GATC	2 cut(s)	187, 543
NlaIII	CATG	4 cut(s)	34, 307, 419, 539
NlaIV	GGNNCC	4 cut(s)	110, 127, 316, 568
NmuCI	GTSAC	2 cut(s)	38, 530
NsbI	TGCGCA	1 cut(s)	453
NspI	RCATGY	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	338, 583
PleI	GAGTC	1 cut(s)	92
PluTI	GGCGCC	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	92
PspEI	GGTNACC	1 cut(s)	530
PspN4I	GGNNCC	4 cut(s)	110, 127, 316, 568
PstI	CTGCAG	3 cut(s)	122, 176, 286
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	2 cut(s)	165, 427
RsaNI	GTAC	2 cut(s)	164, 426
SapI	GCTCTTC	1 cut(s)	200
SatI	GCNGC	2 cut(s)	337, 582
Sau3AI	GATC	2 cut(s)	187, 543
ScaI	AGTACT	1 cut(s)	165
SchI	GAGTC	1 cut(s)	93
SetI	ASST	8 cut(s)	69, 76, 138, 195, 265, 298, 369, 525
SfcI	CTRYAG	3 cut(s)	118, 172, 282
SfoI	GGCGCC	1 cut(s)	568
SmlI	CTYRAG	3 cut(s)	131, 514, 524
SmoI	CTYRAG	3 cut(s)	131, 514, 524
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	1 cut(s)	548
SspDI	GGCGCC	1 cut(s)	566
TaaI	ACNGT	2 cut(s)	49, 349
TasI	AATT	1 cut(s)	148
TatI	WGTACW	2 cut(s)	163, 425
TscAI	CASTG	2 cut(s)	54, 122
TseFI	GTSAC	2 cut(s)	38, 530
TseI	GCWGC	2 cut(s)	336, 581
Tsp45I	GTSAC	2 cut(s)	38, 530
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	54, 122
XceI	RCATGY	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.