Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030729.1

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1549

Gene Structure 1549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030729.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 605 bp

aagaagaagaagaagaaatggcatttgcaggaacaacccagaaatgcatggcttgtgacaaaactgtgtatctggttgataagctcacagctgataacagaatctatcacaaagcctgctttagatgccaccactgcaaaggaaccctcaagctcagcaactacaattcatttgagggagtactttactgcaggccacactttgatcaactcttcaaaagaactggcagtctcgacaaaagctttgaaggcacaccaaaaattgtaaaaccagagagacctgttgataatgagaaagctgcagtggctaaagcttcaagcatgtttggtggaaccagggataaatgctttggctgcaagaaaactgtttatccaacagaaaaggtttcggtgaatggaactccctaccacaagatgtgcttcaaatgtacacatggagggtgtacaatcagcccatcgaactacattgcacatgagggccgcctctactgcaagcaccaccacacccaactcatcaaggagaaaggaaacttgagccaactcgagggtggtggtgaccatgatgagaaagtagtcggtgccacagaaattgctcctgaaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044464 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

200

Amino Acids

22.36

Weight (kDa)

8.41

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	577
AciI	CCGC	1 cut(s)	480
AfaI	GTAC	3 cut(s)	182, 429, 444
AfiI	CCNNNNNNNGG	1 cut(s)	543
AgsI	TTSAA	4 cut(s)	216, 247, 317, 423
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	6 cut(s)	84, 91, 153, 242, 298, 313
AluI	AGCT	6 cut(s)	84, 91, 153, 242, 298, 313
Alw26I	GTCTC	2 cut(s)	235, 270
Ama87I	CYCGRG	1 cut(s)	541
AoxI	GGCC	2 cut(s)	193, 477
ApeKI	GCWGC	2 cut(s)	298, 353
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AspS9I	GGNCC	1 cut(s)	477
AsuHPI	GGTGA	2 cut(s)	402, 565
AvaI	CYCGRG	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	577
BbvI	GCAGC	2 cut(s)	285, 340
BccI	CCATC	1 cut(s)	462
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	235, 270
BfmI	CTRYAG	2 cut(s)	189, 299
BisI	GCNGC	3 cut(s)	299, 354, 480
BlpI	GCTNAGC	1 cut(s)	154
BlsI	GCNGC	3 cut(s)	300, 355, 481
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	336
BmeT110I	CYCGRG	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	477
BmiI	GGNNCC	3 cut(s)	144, 333, 579
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	115
Bpu1102I	GCTNAGC	1 cut(s)	154
BpuEI	CTTGAG	2 cut(s)	133, 552
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	464
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	335
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	285, 340
BshFI	GGCC	2 cut(s)	195, 479
BshNI	GGYRCC	1 cut(s)	577
BsiHKCI	CYCGRG	1 cut(s)	541
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	2 cut(s)	235, 270
BsnI	GGCC	2 cut(s)	195, 479
Bso31I	GGTCTC	1 cut(s)	270
BsoBI	CYCGRG	1 cut(s)	541
Bsp1407I	TGTACA	2 cut(s)	427, 442
Bsp143I	GATC	1 cut(s)	204
Bsp1720I	GCTNAGC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	2 cut(s)	195, 479
BspCNI	CTCAG	1 cut(s)	167
BspLI	GGNNCC	3 cut(s)	144, 333, 579
BspMAI	CTGCAG	2 cut(s)	193, 303
BspT107I	GGYRCC	1 cut(s)	577
BspTNI	GGTCTC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	464
BsrGI	TGTACA	2 cut(s)	427, 442
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	2 cut(s)	66, 366
Bst6I	CTCTTC	1 cut(s)	217
BstAUI	TGTACA	2 cut(s)	427, 442
BstC8I	GCNNGC	3 cut(s)	117, 193, 493
BstDEI	CTNAG	1 cut(s)	154
BstEII	GGTNACC	1 cut(s)	553
BstKTI	GATC	1 cut(s)	207
BstMAI	GTCTC	2 cut(s)	235, 270
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 134, 248, 304, 353, 488
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	324
BstPI	GGTNACC	1 cut(s)	553
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	2 cut(s)	189, 299
BstV1I	GCAGC	2 cut(s)	285, 340
BsuRI	GGCC	2 cut(s)	195, 479
BtsI	GCAGTG	2 cut(s)	132, 308
BtsIMutI	CAGTG	2 cut(s)	132, 308
Cac8I	GCNNGC	3 cut(s)	117, 193, 493
Cfr13I	GGNCC	1 cut(s)	477
Csp6I	GTAC	3 cut(s)	181, 428, 443
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviAII	CATG	5 cut(s)	48, 321, 433, 472, 559
CviQI	GTAC	3 cut(s)	181, 428, 443
DdeI	CTNAG	1 cut(s)	154
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco31I	GGTCTC	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	541
Eco91I	GGTNACC	1 cut(s)	553
EcoO65I	GGTNACC	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	49
FaeI	CATG	5 cut(s)	51, 324, 436, 475, 562
FaiI	YATR	6 cut(s)	49, 322, 434, 473, 560, 603
FalI	AAGNNNNNCTT	2 cut(s)	403, 435
FatI	CATG	5 cut(s)	47, 320, 432, 471, 558
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	299, 354, 480
Fsp4HI	GCNGC	3 cut(s)	299, 354, 480
GluI	GCNGC	3 cut(s)	299, 354, 480
HaeIII	GGCC	2 cut(s)	195, 479
Hin1II	CATG	5 cut(s)	51, 324, 436, 475, 562
HindIII	AAGCTT	2 cut(s)	240, 311
HinfI	GANTC	1 cut(s)	101
HphI	GGTGA	2 cut(s)	402, 565
Hpy166II	GTNNAC	2 cut(s)	430, 443
Hpy188III	TCNNGA	2 cut(s)	232, 595
Hpy8I	GTNNAC	2 cut(s)	430, 443
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	66, 366
HpyCH4V	TGCA	8 cut(s)	28, 47, 137, 191, 301, 356, 469, 491
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 134, 248, 304, 353, 488
HpyF3I	CTNAG	1 cut(s)	154
Hsp92II	CATG	5 cut(s)	51, 324, 436, 475, 562
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	597
Lsp1109I	GCAGC	2 cut(s)	285, 340
LweI	GCATC	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	55, 553
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	5 cut(s)	16, 19, 22, 25, 204
MluCI	AATT	3 cut(s)	165, 260, 587
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	6 cut(s)	157, 168, 430, 468, 493, 537
Mph1103I	ATGCAT	1 cut(s)	49
MspA1I	CMGCKG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	6 cut(s)	125, 134, 248, 304, 353, 488
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	5 cut(s)	51, 324, 436, 475, 562
NlaIV	GGNNCC	3 cut(s)	144, 333, 579
NmuCI	GTSAC	2 cut(s)	55, 553
NsiI	ATGCAT	1 cut(s)	49
NspI	RCATGY	1 cut(s)	324
PaeR7I	CTCGAG	1 cut(s)	541
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	300, 355, 481
Psp6I	CCWGG	1 cut(s)	334
PspEI	GGTNACC	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	3 cut(s)	144, 333, 579
PspPI	GGNCC	1 cut(s)	477
PspXI	VCTCGAGB	1 cut(s)	541
PstI	CTGCAG	2 cut(s)	193, 303
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	3 cut(s)	182, 429, 444
RsaNI	GTAC	3 cut(s)	181, 428, 443
SatI	GCNGC	3 cut(s)	299, 354, 480
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	1 cut(s)	477
ScaI	AGTACT	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	8 cut(s)	86, 93, 155, 244, 282, 300, 315, 386
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	2 cut(s)	189, 299
Sfr274I	CTCGAG	1 cut(s)	541
SlaI	CTCGAG	1 cut(s)	541
SmlI	CTYRAG	3 cut(s)	148, 531, 541
SmoI	CTYRAG	3 cut(s)	148, 531, 541
Sse9I	AATT	3 cut(s)	165, 260, 587
SsiI	CCGC	1 cut(s)	480
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	66, 366
TaqI	TCGA	3 cut(s)	233, 457, 542
TasI	AATT	3 cut(s)	165, 260, 587
TatI	WGTACW	3 cut(s)	180, 427, 442
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	1 cut(s)	101
TscAI	CASTG	2 cut(s)	139, 308
TseFI	GTSAC	2 cut(s)	55, 553
TseI	GCWGC	2 cut(s)	298, 353
Tsp45I	GTSAC	2 cut(s)	55, 553
TspDTI	ATGAA	1 cut(s)	158
TspRI	CASTG	2 cut(s)	139, 308
XceI	RCATGY	1 cut(s)	324
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XhoI	CTCGAG	1 cut(s)	541
ZrmI	AGTACT	1 cut(s)	182
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.