Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036085.1

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Reverse (-)

3534 .. 6567

Gene Structure 3034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036085.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgccggagaacctcttagaacagaacgacgatgtaaggggggagaagcagtttgaagactacatcgtggtggacgaagaggatctcggcgacgacggaatgaaccagggagataacggcgatgacccacgcacaattgatttgctcagcaactacaattcatttgagggagtactttactgcaggccacactttgatcaactcttcaaaagaactggcagtctcgacaaaagctttgaaggcacaccaaaaattgtaaaaccagagagacctgttgataatgagaaagctgcagtggctaaagcttcaagcatgtttggtggaaccagggataaatgctttggctgcaagaaaactgtttatccaacagaaaaggtttcggtgaatggaactccctaccacaagatgtgcttcaaatgtacacatggagggtgtacaatcagcccatcgaactacattgcacatgagggccgcctctactgcaagcaccaccacacccaactcatcaaggagaaaggaaacttgagccaactcgagggtggtggtgaccatgatgagaaagtagtcggtgccacagaaattgctcctgaaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044464 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

198

Amino Acids

22.06

Weight (kDa)

5.26

Isoelectric Point (pI)

29.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	569
AciI	CCGC	1 cut(s)	472
AclWI	GGATC	1 cut(s)	90
AfaI	GTAC	3 cut(s)	174, 421, 436
AfiI	CCNNNNNNNGG	1 cut(s)	535
AgsI	TTSAA	5 cut(s)	56, 208, 239, 309, 415
AjnI	CCWGG	2 cut(s)	105, 326
AluBI	AGCT	3 cut(s)	234, 290, 305
AluI	AGCT	3 cut(s)	234, 290, 305
Alw26I	GTCTC	2 cut(s)	227, 262
AlwI	GGATC	1 cut(s)	90
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	2 cut(s)	185, 469
ApeKI	GCWGC	2 cut(s)	290, 345
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	394, 557
AvaI	CYCGRG	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	569
BbsI	GAAGAC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	277, 332
BccI	CCATC	1 cut(s)	454
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	2 cut(s)	107, 328
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	227, 262
BfmI	CTRYAG	2 cut(s)	181, 291
BisI	GCNGC	3 cut(s)	291, 346, 472
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	3 cut(s)	292, 347, 473
BmcAI	AGTACT	1 cut(s)	174
Bme1390I	CCNGG	2 cut(s)	107, 328
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	2 cut(s)	325, 571
BmrFI	CCNGG	2 cut(s)	107, 328
BpiI	GAAGAC	1 cut(s)	63
Bpu1102I	GCTNAGC	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	544
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	106, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	456
BseBI	CCWGG	2 cut(s)	107, 328
BseDI	CCNNGG	2 cut(s)	106, 327
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	277, 332
BshFI	GGCC	2 cut(s)	187, 471
BshNI	GGYRCC	1 cut(s)	569
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmAI	GTCTC	2 cut(s)	227, 262
BsnI	GGCC	2 cut(s)	187, 471
Bso31I	GGTCTC	1 cut(s)	262
BsoBI	CYCGRG	1 cut(s)	533
Bsp1407I	TGTACA	2 cut(s)	419, 434
Bsp143I	GATC	2 cut(s)	82, 196
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	1 cut(s)	472
BspANI	GGCC	2 cut(s)	187, 471
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	325, 571
BspMAI	CTGCAG	2 cut(s)	185, 295
BspPI	GGATC	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	456
BsrGI	TGTACA	2 cut(s)	419, 434
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	106, 327
BssMI	GATC	2 cut(s)	82, 196
Bst2UI	CCWGG	2 cut(s)	107, 328
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	72, 209
BstAUI	TGTACA	2 cut(s)	419, 434
BstC8I	GCNNGC	2 cut(s)	185, 485
BstDEI	CTNAG	2 cut(s)	16, 146
BstEII	GGTNACC	1 cut(s)	545
BstKTI	GATC	2 cut(s)	85, 199
BstMAI	GTCTC	2 cut(s)	227, 262
BstMBI	GATC	2 cut(s)	82, 196
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 296, 345, 480
BstNI	CCWGG	2 cut(s)	107, 328
BstNSI	RCATGY	1 cut(s)	316
BstPI	GGTNACC	1 cut(s)	545
BstSCI	CCNGG	2 cut(s)	105, 326
BstSFI	CTRYAG	2 cut(s)	181, 291
BstV1I	GCAGC	2 cut(s)	277, 332
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	187, 471
BtgZI	GCGATG	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	185, 485
Cfr13I	GGNCC	1 cut(s)	469
Csp6I	GTAC	3 cut(s)	173, 420, 435
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CviAII	CATG	4 cut(s)	313, 425, 464, 551
CviJI	RGCY	9 cut(s)	187, 234, 290, 299, 305, 345, 444, 471, 528
CviKI_1	RGCY	9 cut(s)	187, 234, 290, 299, 305, 345, 444, 471, 528
CviQI	GTAC	3 cut(s)	173, 420, 435
DdeI	CTNAG	2 cut(s)	16, 146
DpnI	GATC	2 cut(s)	84, 198
DpnII	GATC	2 cut(s)	82, 196
Eam1104I	CTCTTC	2 cut(s)	72, 209
EarI	CTCTTC	2 cut(s)	72, 209
Eco31I	GGTCTC	1 cut(s)	262
Eco88I	CYCGRG	1 cut(s)	533
Eco91I	GGTNACC	1 cut(s)	545
EcoO65I	GGTNACC	1 cut(s)	545
EcoRII	CCWGG	2 cut(s)	105, 326
FaeI	CATG	4 cut(s)	316, 428, 467, 554
FaiI	YATR	5 cut(s)	314, 426, 465, 552, 595
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FatI	CATG	4 cut(s)	312, 424, 463, 550
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	3 cut(s)	291, 346, 472
Fsp4HI	GCNGC	3 cut(s)	291, 346, 472
GluI	GCNGC	3 cut(s)	291, 346, 472
HaeIII	GGCC	2 cut(s)	187, 471
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	4 cut(s)	316, 428, 467, 554
HindIII	AAGCTT	2 cut(s)	232, 303
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	2 cut(s)	394, 557
Hpy166II	GTNNAC	3 cut(s)	73, 422, 435
Hpy188III	TCNNGA	2 cut(s)	224, 587
Hpy8I	GTNNAC	3 cut(s)	73, 422, 435
Hpy99I	CGWCG	3 cut(s)	32, 95, 98
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	5 cut(s)	183, 293, 348, 461, 483
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 296, 345, 480
HpyF3I	CTNAG	2 cut(s)	16, 146
Hsp92II	CATG	4 cut(s)	316, 428, 467, 554
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	82, 196
LmnI	GCTCC	1 cut(s)	589
LpnPI	CCDG	9 cut(s)	18, 92, 119, 169, 201, 276, 285, 313, 340
Lsp1109I	GCAGC	2 cut(s)	277, 332
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	2 cut(s)	84, 198
MboI	GATC	2 cut(s)	82, 196
MboII	GAAGA	3 cut(s)	68, 89, 196
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	1 cut(s)	82
MluCI	AATT	4 cut(s)	135, 157, 252, 579
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	7 cut(s)	23, 73, 160, 422, 460, 485, 529
MslI	CAYNNNNRTG	1 cut(s)	68
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	107, 328
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	2 cut(s)	107, 328
MwoI	GCNNNNNNNGC	4 cut(s)	240, 296, 345, 480
NdeII	GATC	2 cut(s)	82, 196
NlaIII	CATG	4 cut(s)	316, 428, 467, 554
NlaIV	GGNNCC	2 cut(s)	325, 571
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	545
NspI	RCATGY	1 cut(s)	316
PaeR7I	CTCGAG	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PkrI	GCNGC	3 cut(s)	292, 347, 473
Psp6I	CCWGG	2 cut(s)	105, 326
PspEI	GGTNACC	1 cut(s)	545
PspGI	CCWGG	2 cut(s)	105, 326
PspN4I	GGNNCC	2 cut(s)	325, 571
PspPI	GGNCC	1 cut(s)	469
PspXI	VCTCGAGB	1 cut(s)	533
PstI	CTGCAG	2 cut(s)	185, 295
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	3 cut(s)	174, 421, 436
RsaNI	GTAC	3 cut(s)	173, 420, 435
RseI	CAYNNNNRTG	1 cut(s)	68
SatI	GCNGC	3 cut(s)	291, 346, 472
Sau3AI	GATC	2 cut(s)	82, 196
Sau96I	GGNCC	1 cut(s)	469
ScaI	AGTACT	1 cut(s)	174
ScrFI	CCNGG	2 cut(s)	107, 328
SetI	ASST	6 cut(s)	15, 236, 274, 292, 307, 378
SfcI	CTRYAG	2 cut(s)	181, 291
Sfr274I	CTCGAG	1 cut(s)	533
SlaI	CTCGAG	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	2 cut(s)	523, 533
SmoI	CTYRAG	2 cut(s)	523, 533
Sse9I	AATT	4 cut(s)	135, 157, 252, 579
SsiI	CCGC	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	105, 326
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	3 cut(s)	225, 449, 534
TasI	AATT	4 cut(s)	135, 157, 252, 579
TatI	WGTACW	3 cut(s)	172, 419, 434
TauI	GCSGC	1 cut(s)	474
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	2 cut(s)	290, 345
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	2 cut(s)	116, 150
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	300
XceI	RCATGY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XhoI	CTCGAG	1 cut(s)	533
ZrmI	AGTACT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.