Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Reverse (-)

56320063 .. 56321794

Gene Structure 1732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0426300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCTGAGAAGAACATTCACGTGCAGGCTTTGGAGAAGGGAGACCAGAAAAAAGGTGAGAGAAGCAACGATGAAGCATCTTCTGAAAAAATCTCAACAGAAGGTCACCCAGTTGAGGTTTCACCAAAGGAAGCTCCTTGTGAACAAAGTCATTCTGTTGACGTAAATCTCGACAAGGAGAGCATGATCAATTCGAAACCTCCTCAAGTGACTGAAGCAGCTCAAGAACCAAAACCTTCTCAAGCACTTGAAGGAACTCAAGAGACAAAACCTTCTCAAGTGATTGAAGCAGCTCAAAAACCAGAACCCTATCAAGTGATTGAGGCCTCTCAAGAACCAGATCTTTCTCAAATGATTGAAGCAGCTCAAGAACCAAAGCAAGAAGAAAAGGGCCTAGGCGGTTTTGATCTGAATCAAGAAGGAACTTGTGTTGGATCTGCTTCAACACCAGCAGCAGGGGCTGGTTTACCTGTAGCCAAACTGCTGTTTGATCTGAATGTGGTAGATGGAGAGGGTTTGGAAAACCATATTTTGCCGCCATCTGATCTCCATGAATCTCCAAGGGAAGTGAATTATGGGAGGCTGAATTTGGACTTAAACCATTGGAATGGTGAAGGTGATGCTCTAGCATGGGATTTAAACCATTGCATCCCATCTCCTCCTGCCTCACCATCACCGTCCTCGTCATCATCATCAGTGCCACAGCCTTCTATGGAGGAGCACTTTGATAAGAATGGCACGGAGGAGACACATATTCGTAATGATTCTCTACTTCAGGGGGGCGCACCTGATGTTTCAGTTTTTCGTATCATGGGAGCCAACGTGGTGATTAGTCCTGAAAGAAACAAAGGTGGTGTTCCAACAACTCTACCTCCGCCAAGCAATGGCAAGGCTCCTATTCTGTTTGGGCGCAGGCTTGGTGGAACGGCTGCAGGGGCCACGTGCTCTCCAATGGCTGTTGATGAGCCTCAGCTGTTGCCCCTTTTTTGTTCAAGTTCTACTGGTGGCTTGAAAAGGAAGGAACCAGAAGGTGGCAAGGAACCATACGTAGCTGGGACAAAGAGGACCTGTTCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

359

Amino Acids

38.09

Weight (kDa)

4.81

Isoelectric Point (pI)

65.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	884, 1031
AciI	CCGC	3 cut(s)	399, 536, 875
AclWI	GGATC	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	586
AcuI	CTGAAG	2 cut(s)	234, 758
AcvI	CACGTG	2 cut(s)	22, 942
AfiI	CCNNNNNNNGG	4 cut(s)	115, 455, 884, 1031
AgsI	TTSAA	6 cut(s)	251, 287, 359, 444, 993, 1012
AluBI	AGCT	6 cut(s)	134, 221, 293, 365, 973, 1052
AluI	AGCT	6 cut(s)	134, 221, 293, 365, 973, 1052
Alw21I	GWGCWC	2 cut(s)	723, 947
Alw26I	GTCTC	3 cut(s)	36, 257, 740
AlwI	GGATC	1 cut(s)	442
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	3 cut(s)	324, 391, 936
ApeKI	GCWGC	5 cut(s)	218, 290, 362, 452, 929
ApoI	RAATTY	1 cut(s)	586
ArsI	GACNNNNNNTTYG	1 cut(s)	1057
AspA2I	CCTAGG	1 cut(s)	394
AspLEI	GCGC	2 cut(s)	785, 912
AspS9I	GGNCC	3 cut(s)	391, 936, 1065
AsuHPI	GGTGA	8 cut(s)	68, 98, 114, 623, 629, 660, 666, 838
AsuII	TTCGAA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	1065
AvrII	CCTAGG	1 cut(s)	394
BbrPI	CACGTG	2 cut(s)	22, 942
Bbv12I	GWGCWC	2 cut(s)	723, 947
BbvCI	CCTCAGC	1 cut(s)	969
BbvI	GCAGC	5 cut(s)	230, 302, 374, 464, 916
BccI	CCATC	4 cut(s)	500, 547, 661, 679
BceAI	ACGGC	1 cut(s)	942
BclI	TGATCA	1 cut(s)	186
BcoDI	GTCTC	3 cut(s)	36, 257, 740
BfaI	CTAG	2 cut(s)	395, 626
BfmI	CTRYAG	2 cut(s)	471, 930
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	6 cut(s)	219, 291, 363, 453, 536, 930
BlnI	CCTAGG	1 cut(s)	394
BlsI	GCNGC	6 cut(s)	220, 292, 364, 454, 537, 931
Bme18I	GGWCC	1 cut(s)	1065
BmgT120I	GGNCC	3 cut(s)	391, 936, 1065
BmiI	GGNNCC	5 cut(s)	817, 894, 937, 1023, 1041
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	3 cut(s)	86, 610, 657
BmuI	ACTGGG	1 cut(s)	104
Bpu10I	CCTNAGC	1 cut(s)	969
Bpu14I	TTCGAA	1 cut(s)	194
BpuEI	CTTGAG	7 cut(s)	189, 207, 225, 243, 261, 315, 351
BsaAI	YACGTR	3 cut(s)	22, 942, 1048
BsaBI	GATNNNNATC	1 cut(s)	411
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	394, 560
BsaXI	ACNNNNNCTCC	6 cut(s)	807, 837, 856, 886, 931, 961
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 455, 884, 1031
Bse1I	ACTGG	2 cut(s)	110, 1006
Bse3DI	GCAATG	2 cut(s)	643, 889
Bse8I	GATNNNNATC	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	394, 560
BseGI	GGATG	1 cut(s)	648
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	4 cut(s)	115, 455, 884, 1031
BseMI	GCAATG	2 cut(s)	643, 889
BseMII	CTCAG	1 cut(s)	983
BseNI	ACTGG	2 cut(s)	110, 1006
BseRI	GAGGAG	4 cut(s)	192, 648, 731, 758
BseXI	GCAGC	5 cut(s)	230, 302, 374, 464, 916
BseYI	CCCAGC	1 cut(s)	1052
BsgI	GTGCAG	1 cut(s)	44
BshFI	GGCC	3 cut(s)	326, 393, 938
BsiHKAI	GWGCWC	2 cut(s)	723, 947
BslFI	GGGAC	1 cut(s)	1069
BslI	CCNNNNNNNGG	4 cut(s)	115, 455, 884, 1031
BsmAI	GTCTC	3 cut(s)	36, 257, 740
BsmFI	GGGAC	1 cut(s)	1069
BsnI	GGCC	3 cut(s)	326, 393, 938
Bso31I	GGTCTC	1 cut(s)	36
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	723, 947
Bsp143I	GATC	6 cut(s)	186, 340, 406, 434, 490, 544
BspACI	CCGC	3 cut(s)	399, 536, 875
BspANI	GGCC	3 cut(s)	326, 393, 938
BspCNI	CTCAG	1 cut(s)	982
BspLI	GGNNCC	5 cut(s)	817, 894, 937, 1023, 1041
BspMAI	CTGCAG	1 cut(s)	934
BspPI	GGATC	1 cut(s)	442
BspT104I	TTCGAA	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	36
BsrDI	GCAATG	2 cut(s)	643, 889
BsrI	ACTGG	2 cut(s)	110, 1006
BssECI	CCNNGG	2 cut(s)	394, 560
BssMI	GATC	6 cut(s)	186, 340, 406, 434, 490, 544
BssT1I	CCWWGG	2 cut(s)	394, 560
Bst4CI	ACNGT	1 cut(s)	678
BstBAI	YACGTR	3 cut(s)	22, 942, 1048
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	27, 914
BstDEI	CTNAG	2 cut(s)	6, 969
BstEII	GGTNACC	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	648
BstHHI	GCGC	2 cut(s)	785, 912
BstKTI	GATC	6 cut(s)	189, 343, 409, 437, 493, 547
BstMAI	GTCTC	3 cut(s)	36, 257, 740
BstMBI	GATC	6 cut(s)	186, 340, 406, 434, 490, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	458, 935
BstPI	GGTNACC	1 cut(s)	104
BstSFI	CTRYAG	2 cut(s)	471, 930
BstSNI	TACGTA	1 cut(s)	1048
BstV1I	GCAGC	5 cut(s)	230, 302, 374, 464, 916
BstX2I	RGATCY	2 cut(s)	340, 434
BstXI	CCANNNNNNTGG	1 cut(s)	608
BstYI	RGATCY	2 cut(s)	340, 434
BsuRI	GGCC	3 cut(s)	326, 393, 938
BtsCI	GGATG	1 cut(s)	648
BtsIMutI	CAGTG	1 cut(s)	702
Cac8I	GCNNGC	2 cut(s)	27, 914
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	2 cut(s)	785, 912
Cfr13I	GGNCC	3 cut(s)	391, 936, 1065
CviAII	CATG	4 cut(s)	184, 551, 630, 811
DdeI	CTNAG	2 cut(s)	6, 969
DpnI	GATC	6 cut(s)	188, 342, 408, 436, 492, 546
DpnII	GATC	6 cut(s)	186, 340, 406, 434, 490, 544
DraI	TTTAAA	1 cut(s)	639
EciI	GGCGGA	1 cut(s)	864
Eco105I	TACGTA	1 cut(s)	1048
Eco130I	CCWWGG	2 cut(s)	394, 560
Eco147I	AGGCCT	1 cut(s)	326
Eco31I	GGTCTC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	1065
Eco57I	CTGAAG	2 cut(s)	234, 758
Eco72I	CACGTG	2 cut(s)	22, 942
Eco91I	GGTNACC	1 cut(s)	104
EcoO109I	RGGNCCY	2 cut(s)	391, 1065
EcoO65I	GGTNACC	1 cut(s)	104
EcoT14I	CCWWGG	2 cut(s)	394, 560
ErhI	CCWWGG	2 cut(s)	394, 560
FaeI	CATG	4 cut(s)	187, 554, 633, 814
FaiI	YATR	9 cut(s)	185, 528, 552, 576, 631, 713, 753, 812, 1045
FaqI	GGGAC	1 cut(s)	1069
FatI	CATG	4 cut(s)	183, 550, 629, 810
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	6 cut(s)	219, 291, 363, 453, 536, 930
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	6 cut(s)	219, 291, 363, 453, 536, 930
FspBI	CTAG	2 cut(s)	395, 626
GlaI	GCGC	2 cut(s)	784, 911
GluI	GCNGC	6 cut(s)	219, 291, 363, 453, 536, 930
GsaI	CCCAGC	1 cut(s)	1056
HaeIII	GGCC	3 cut(s)	326, 393, 938
HhaI	GCGC	2 cut(s)	785, 912
Hin1II	CATG	4 cut(s)	187, 554, 633, 814
Hin6I	GCGC	2 cut(s)	783, 910
HinP1I	GCGC	2 cut(s)	783, 910
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	412, 554, 764
HphI	GGTGA	8 cut(s)	68, 98, 114, 623, 629, 660, 666, 838
Hpy166II	GTNNAC	3 cut(s)	143, 160, 467
Hpy188I	TCNGA	4 cut(s)	85, 411, 495, 544
Hpy188III	TCNNGA	7 cut(s)	170, 224, 260, 332, 368, 416, 836
Hpy8I	GTNNAC	3 cut(s)	143, 160, 467
HpyCH4III	ACNGT	1 cut(s)	678
HpyCH4IV	ACGT	5 cut(s)	21, 162, 822, 941, 1047
HpyCH4V	TGCA	3 cut(s)	25, 648, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	458, 935
HpyF3I	CTNAG	2 cut(s)	6, 969
HpySE526I	ACGT	5 cut(s)	21, 162, 822, 941, 1047
Hsp92II	CATG	4 cut(s)	187, 554, 633, 814
HspAI	GCGC	2 cut(s)	783, 910
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	6 cut(s)	186, 340, 406, 434, 490, 544
LmnI	GCTCC	4 cut(s)	139, 718, 815, 898
Lsp1109I	GCAGC	5 cut(s)	230, 302, 374, 464, 916
LweI	GCATC	3 cut(s)	86, 610, 657
MaeI	CTAG	2 cut(s)	395, 626
MaeII	ACGT	5 cut(s)	21, 162, 822, 941, 1047
MaeIII	GTNAC	2 cut(s)	104, 208
MalI	GATC	6 cut(s)	188, 342, 408, 436, 492, 546
MboI	GATC	6 cut(s)	186, 340, 406, 434, 490, 544
MboII	GAAGA	3 cut(s)	22, 72, 395
MflI	RGATCY	2 cut(s)	340, 434
MhlI	GDGCHC	2 cut(s)	723, 947
MluCI	AATT	3 cut(s)	190, 571, 586
MmeI	TCCRAC	2 cut(s)	412, 884
MseI	TTAA	2 cut(s)	596, 638
MslI	CAYNNNNRTG	2 cut(s)	20, 606
MspA1I	CMGCKG	1 cut(s)	973
MwoI	GCNNNNNNNGC	2 cut(s)	458, 935
NdeII	GATC	6 cut(s)	186, 340, 406, 434, 490, 544
NlaIII	CATG	4 cut(s)	187, 554, 633, 814
NlaIV	GGNNCC	5 cut(s)	817, 894, 937, 1023, 1041
NmuCI	GTSAC	2 cut(s)	104, 208
NspV	TTCGAA	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	3 cut(s)	412, 554, 764
PflMI	CCANNNNNTGG	2 cut(s)	884, 1031
PkrI	GCNGC	6 cut(s)	220, 292, 364, 454, 537, 931
PmaCI	CACGTG	2 cut(s)	22, 942
PmlI	CACGTG	2 cut(s)	22, 942
Ppu21I	YACGTR	3 cut(s)	22, 942, 1048
PpuMI	RGGWCCY	1 cut(s)	1065
Psp5II	RGGWCCY	1 cut(s)	1065
PspCI	CACGTG	2 cut(s)	22, 942
PspEI	GGTNACC	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	1052
PspN4I	GGNNCC	5 cut(s)	817, 894, 937, 1023, 1041
PspPI	GGNCC	3 cut(s)	391, 936, 1065
PspPPI	RGGWCCY	1 cut(s)	1065
PstI	CTGCAG	1 cut(s)	934
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	2 cut(s)	340, 434
PvuII	CAGCTG	1 cut(s)	973
RseI	CAYNNNNRTG	2 cut(s)	20, 606
SaqAI	TTAA	2 cut(s)	596, 638
SatI	GCNGC	6 cut(s)	219, 291, 363, 453, 536, 930
Sau3AI	GATC	6 cut(s)	186, 340, 406, 434, 490, 544
Sau96I	GGNCC	3 cut(s)	391, 936, 1065
SduI	GDGCHC	2 cut(s)	723, 947
SfaNI	GCATC	3 cut(s)	86, 610, 657
SfcI	CTRYAG	2 cut(s)	471, 930
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	1 cut(s)	1065
SmiMI	CAYNNNNRTG	2 cut(s)	20, 606
SmlI	CTYRAG	7 cut(s)	204, 222, 240, 258, 276, 330, 366
SmoI	CTYRAG	7 cut(s)	204, 222, 240, 258, 276, 330, 366
SnaBI	TACGTA	1 cut(s)	1048
Sse9I	AATT	3 cut(s)	190, 571, 586
SseBI	AGGCCT	1 cut(s)	326
SsiI	CCGC	3 cut(s)	399, 536, 875
SspMI	CTAG	2 cut(s)	395, 626
StuI	AGGCCT	1 cut(s)	326
StyI	CCWWGG	2 cut(s)	394, 560
TaaI	ACNGT	1 cut(s)	678
TaiI	ACGT	5 cut(s)	24, 165, 825, 944, 1050
TaqI	TCGA	2 cut(s)	171, 194
TasI	AATT	3 cut(s)	190, 571, 586
TauI	GCSGC	1 cut(s)	538
TfiI	GAWTC	3 cut(s)	412, 554, 764
Tru1I	TTAA	2 cut(s)	596, 638
Tru9I	TTAA	2 cut(s)	596, 638
TscAI	CASTG	1 cut(s)	702
TseFI	GTSAC	2 cut(s)	104, 208
TseI	GCWGC	5 cut(s)	218, 290, 362, 452, 929
Tsp45I	GTSAC	2 cut(s)	104, 208
TspDTI	ATGAA	2 cut(s)	87, 567
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	1 cut(s)	702
Van91I	CCANNNNNTGG	2 cut(s)	884, 1031
VpaK11BI	GGWCC	1 cut(s)	1065
XapI	RAATTY	1 cut(s)	586
XmaJI	CCTAGG	1 cut(s)	394
XspI	CTAG	2 cut(s)	395, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.